Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48495 * 109.46970 * 240.00106 * 3 2 1 5 5 H 1.48504 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47241 * 119.99670 * 3 2 1 7 7 C 1.39931 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00390 * 196.78954 * 7 2 1 9 9 C 1.41413 * 120.00232 * 16.78821 * 7 2 1 10 10 C 1.40776 * 120.20649 * 25.17800 * 9 7 2 11 11 C 1.37650 * 119.87947 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32124 * 359.97438 * 11 10 9 13 13 C 1.39240 * 120.43320 * 0.04946 * 12 11 10 14 14 N 1.39959 * 119.94880 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00092 * 145.76368 * 14 13 12 16 16 O 1.21584 * 119.99832 * 354.84776 * 15 14 13 17 17 N 1.34776 * 119.99919 * 174.84466 * 15 14 13 18 18 C 1.46497 * 119.99989 * 180.02562 * 17 15 14 19 19 C 1.53007 * 109.46979 * 180.02562 * 18 17 15 20 20 H 1.08996 * 115.56036 * 29.31555 * 19 18 17 21 21 C 1.52997 * 117.49690 * 243.62358 * 19 18 17 22 22 C 1.52996 * 117.49472 * 175.00059 * 19 18 17 23 23 H 1.08996 * 117.50578 * 359.97438 * 22 19 18 24 24 C 1.52998 * 117.51568 * 214.96940 * 22 19 18 25 25 C 1.53785 * 113.61474 * 159.25870 * 24 22 19 26 26 C 1.53953 * 87.01966 * 220.04868 * 25 24 22 27 27 C 1.53778 * 113.61557 * 61.65201 * 24 22 19 28 28 C 1.38275 * 120.10571 * 0.22383 * 13 12 11 29 29 H 0.96997 * 120.00019 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.06141 * 359.97438 * 10 9 7 31 31 H 1.08006 * 119.83237 * 180.02562 * 11 10 9 32 32 H 1.08010 * 119.78181 * 180.02562 * 12 11 10 33 33 H 0.96999 * 119.99713 * 325.76229 * 14 13 12 34 34 H 0.97003 * 119.99497 * 0.02562 * 17 15 14 35 35 H 1.08994 * 109.47028 * 60.00114 * 18 17 15 36 36 H 1.09002 * 109.46988 * 300.00119 * 18 17 15 37 37 H 1.09003 * 117.50116 * 145.02283 * 21 19 18 38 38 H 1.09000 * 117.51762 * 359.97438 * 21 19 18 39 39 H 1.09003 * 112.85229 * 290.45416 * 24 22 19 40 40 H 1.08998 * 113.61332 * 334.56451 * 25 24 22 41 41 H 1.08994 * 113.61697 * 105.47100 * 25 24 22 42 42 H 1.09001 * 113.53712 * 270.80956 * 26 25 24 43 43 H 1.09002 * 113.74580 * 139.94034 * 26 25 24 44 44 H 1.09006 * 113.61407 * 254.52785 * 27 24 22 45 45 H 1.09000 * 113.61806 * 25.42907 * 27 24 22 46 46 H 1.07998 * 120.16194 * 179.74610 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0535 -1.2318 0.2707 9 6 1.3461 -2.4106 -0.3526 10 6 0.2109 -2.3743 -1.1844 11 6 -0.4284 -3.5452 -1.5235 12 6 0.0400 -4.7600 -1.0507 13 6 1.1614 -4.8112 -0.2269 14 7 1.6257 -6.0442 0.2455 15 6 2.9473 -6.2463 0.4158 16 8 3.7421 -5.3930 0.0715 17 7 3.3879 -7.3942 0.9678 18 6 4.8244 -7.6136 1.1534 19 6 5.0523 -8.9843 1.7941 20 1 4.3018 -9.7409 1.5655 21 6 5.6874 -9.0167 3.1856 22 6 6.4988 -9.4528 1.9640 23 1 7.2881 -8.7849 1.6190 24 6 6.7815 -10.9475 1.8006 25 6 8.2528 -11.2653 1.4852 26 6 7.7288 -12.3279 0.5021 27 6 6.4440 -11.4889 0.4014 28 6 1.8140 -3.6454 0.1296 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1582 -1.4295 -1.5550 31 1 -1.2991 -3.5165 -2.1620 32 1 -0.4681 -5.6735 -1.3226 33 1 0.9962 -6.7532 0.4503 34 1 2.7537 -8.0750 1.2421 35 1 5.2297 -6.8370 1.8019 36 1 5.3255 -7.5772 0.1860 37 1 5.3547 -9.7948 3.8727 38 1 5.9433 -8.0619 3.6448 39 1 6.3695 -11.5474 2.6120 40 1 8.7824 -10.4453 1.0003 41 1 8.8000 -11.6831 2.3302 42 1 7.5769 -13.3060 0.9585 43 1 8.2913 -12.3786 -0.4302 44 1 5.5331 -12.0870 0.3727 45 1 6.4781 -10.7301 -0.3804 46 1 2.6814 -3.6837 0.7718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577505643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = 9.563783 kcal Electronic energy + Delta-G solvation = -24636.246380 eV Core-core repulsion = 21104.771517 eV Total energy + Delta-G solvation = -3531.474863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45418 -40.29734 -39.16048 -37.64380 -36.18284 -35.22186 -34.67816 -31.73486 -30.18362 -28.13344 -27.22618 -26.43729 -26.35545 -23.40884 -22.71829 -22.15920 -21.95849 -21.31548 -20.23170 -19.57465 -19.15305 -17.63921 -17.21849 -16.62741 -16.52282 -16.38821 -16.32012 -15.82410 -15.37902 -15.13947 -14.75944 -14.68940 -14.54767 -13.99768 -13.74677 -13.50852 -13.33996 -13.27733 -13.01167 -12.92155 -12.76805 -12.59932 -12.33015 -12.17891 -11.99776 -11.72353 -11.56772 -11.48506 -11.33186 -11.24775 -11.00587 -10.80581 -10.72285 -10.56044 -10.05536 -9.37964 -8.71654 -8.57373 -6.35831 0.94139 1.04237 1.35901 1.47412 1.51542 1.68048 2.18459 2.21704 2.74082 2.77500 3.30193 3.56255 3.75190 3.76620 3.77269 3.98831 4.06847 4.12932 4.23298 4.29160 4.48655 4.56927 4.64003 4.65818 4.72473 4.90531 4.93674 4.94942 4.96658 5.06083 5.10701 5.12410 5.13672 5.14572 5.19988 5.22758 5.29616 5.33987 5.43156 5.49298 5.68220 5.74027 5.84388 6.07160 6.12522 6.20872 6.38101 6.69847 6.95351 7.02371 7.12086 7.60460 8.34241 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.002232 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.450616 B =12539.305378 C =13368.289797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.088 3.912 10 C -0.199 4.199 11 C -0.090 4.090 12 C -0.251 4.251 13 C 0.177 3.823 14 N -0.669 5.669 15 C 0.693 3.307 16 O -0.621 6.621 17 N -0.722 5.722 18 C 0.172 3.828 19 C -0.155 4.155 20 H 0.127 0.873 21 C -0.168 4.168 22 C -0.127 4.127 23 H 0.100 0.900 24 C -0.077 4.077 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.238 4.238 29 H 0.289 0.711 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.418 0.582 34 H 0.414 0.586 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.452 -22.976 4.593 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.109 4.109 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.393 3.607 16 O -0.501 6.501 17 N -0.379 5.379 18 C 0.048 3.952 19 C -0.174 4.174 20 H 0.144 0.856 21 C -0.204 4.204 22 C -0.146 4.146 23 H 0.118 0.882 24 C -0.095 4.095 25 C -0.174 4.174 26 C -0.181 4.181 27 C -0.174 4.174 28 C -0.260 4.260 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.256 0.744 34 H 0.251 0.749 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.999 -22.119 4.346 24.272 hybrid contribution -0.132 0.509 0.258 0.586 sum 8.867 -21.610 4.603 23.808 Atomic orbital electron populations 1.69852 1.08658 1.30596 1.35633 1.26698 0.95639 1.04190 0.91227 0.85277 0.78885 0.75788 0.79854 1.18750 1.18289 1.18778 1.19695 0.97439 0.92739 1.43413 0.92097 1.17840 0.92009 0.92335 0.89253 1.21302 1.00043 0.97650 1.02901 1.20834 0.98896 0.92102 0.99040 1.20443 1.01716 0.98124 1.06984 1.17290 0.95362 0.83400 0.95681 1.42321 1.05858 1.14885 1.68733 1.16216 0.82528 0.83011 0.78924 1.90955 1.55557 1.46162 1.57400 1.44857 1.09035 1.18068 1.65982 1.20697 0.79306 0.95593 0.99651 1.22350 0.98097 0.96296 1.00637 0.85564 1.23292 1.03108 1.03404 0.90633 1.22437 0.93044 0.96902 1.02209 0.88232 1.22163 0.97169 0.92321 0.97889 1.22997 0.95750 0.99057 0.99578 1.22873 0.97292 0.98134 0.99830 1.22915 0.98308 0.99276 0.96916 1.20942 1.04607 0.92324 1.08161 0.89981 0.87726 0.85741 0.84939 0.74403 0.74892 0.93310 0.92725 0.87056 0.89322 0.88283 0.90479 0.90944 0.89450 0.91551 0.91118 0.90867 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.61 10.94 21.82 0.24 -44.37 16 2 C 0.04 2.01 5.16 85.25 0.44 2.45 16 3 Si 0.98 40.94 29.59 68.60 2.03 42.97 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.50 -30.00 9.05 23.46 0.21 -29.79 16 8 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 9 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 10 C -0.20 -10.95 8.69 22.75 0.20 -10.75 16 11 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 12 C -0.25 -10.75 9.97 22.58 0.23 -10.53 16 13 C 0.18 8.20 6.25 38.09 0.24 8.44 16 14 N -0.67 -23.86 5.34 -317.32 -1.70 -25.55 16 15 C 0.69 25.95 8.29 179.05 1.48 27.43 16 16 O -0.62 -30.65 14.10 -3.98 -0.06 -30.71 16 17 N -0.72 -18.15 5.56 -478.53 -2.66 -20.81 16 18 C 0.17 4.05 5.96 86.38 0.51 4.56 16 19 C -0.16 -2.37 5.41 -10.79 -0.06 -2.42 16 20 H 0.13 1.53 8.04 -2.39 -0.02 1.51 16 21 C -0.17 -2.32 9.86 30.59 0.30 -2.02 16 22 C -0.13 -1.79 5.25 -10.79 -0.06 -1.84 16 23 H 0.10 1.58 7.97 -2.39 -0.02 1.56 16 24 C -0.08 -0.88 3.87 -10.27 -0.04 -0.92 16 25 C -0.14 -1.53 7.65 31.18 0.24 -1.30 16 26 C -0.14 -1.53 8.09 31.18 0.25 -1.27 16 27 C -0.14 -1.63 7.49 31.12 0.23 -1.39 16 28 C -0.24 -13.36 8.39 22.85 0.19 -13.17 16 29 H 0.29 14.08 8.30 -92.71 -0.77 13.32 16 30 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 31 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.42 10.59 8.84 -92.71 -0.82 9.77 16 34 H 0.41 6.96 8.42 -92.71 -0.78 6.18 16 35 H 0.05 1.34 7.88 -2.39 -0.02 1.32 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 38 H 0.09 1.40 8.03 -2.39 -0.02 1.38 16 39 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 40 H 0.08 0.94 7.98 -2.39 -0.02 0.93 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.07 1.03 8.10 -2.39 -0.02 1.02 16 46 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 Total: -1.00 -73.78 378.92 1.73 -72.05 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.61 Total: 37.78 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 4.48 Total: -31.36 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -4.12 Total: -90.73 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.06 Total: -30.71 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -73.78 1.73 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577505643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.612 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds