Wall clock time and date at job start Tue Mar 31 2020 10:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86797 * 119.99512 * 2 1 4 4 H 1.48499 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47498 * 300.00117 * 3 2 1 6 6 H 1.48502 * 109.47256 * 60.00293 * 3 2 1 7 7 C 1.39927 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99703 * 195.62815 * 7 2 1 9 9 C 1.41411 * 120.00234 * 15.61580 * 7 2 1 10 10 C 1.40771 * 120.20845 * 29.19674 * 9 7 2 11 11 C 1.37634 * 119.88610 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31968 * 0.27316 * 11 10 9 13 13 C 1.39239 * 120.42888 * 359.44833 * 12 11 10 14 14 N 1.39958 * 119.95217 * 180.27855 * 13 12 11 15 15 C 1.34779 * 119.99324 * 33.27664 * 14 13 12 16 16 O 1.21583 * 120.00684 * 5.15626 * 15 14 13 17 17 N 1.34783 * 119.99682 * 185.14739 * 15 14 13 18 18 C 1.47022 * 125.64754 * 0.02744 * 17 15 14 19 19 C 1.54318 * 107.26876 * 181.02163 * 18 17 15 20 20 C 1.55156 * 102.94701 * 22.19478 * 19 18 17 21 21 H 1.08997 * 111.00463 * 82.60931 * 20 19 18 22 22 C 1.52994 * 111.00746 * 206.42560 * 20 19 18 23 23 C 1.53001 * 109.47512 * 184.99851 * 22 20 19 24 24 C 1.52996 * 117.49838 * 243.74814 * 23 22 20 25 25 C 1.52991 * 117.50087 * 175.08690 * 23 22 20 26 26 C 1.47422 * 125.64623 * 179.71892 * 17 15 14 27 27 C 1.38281 * 120.10415 * 0.55069 * 13 12 11 28 28 H 0.96991 * 119.99968 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05611 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.84204 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78376 * 179.69998 * 12 11 10 32 32 H 0.96993 * 120.00702 * 213.28215 * 14 13 12 33 33 H 1.08999 * 109.88671 * 300.43854 * 18 17 15 34 34 H 1.08998 * 109.88365 * 61.60482 * 18 17 15 35 35 H 1.09003 * 110.72264 * 140.56141 * 19 18 17 36 36 H 1.09005 * 110.72151 * 263.64689 * 19 18 17 37 37 H 1.09004 * 109.46823 * 305.00009 * 22 20 19 38 38 H 1.09005 * 109.47459 * 64.99096 * 22 20 19 39 39 H 1.08998 * 115.54518 * 29.41304 * 23 22 20 40 40 H 1.09003 * 117.49790 * 359.97438 * 24 23 22 41 41 H 1.09001 * 117.49786 * 145.01932 * 24 23 22 42 42 H 1.09007 * 117.49937 * 214.98185 * 25 23 22 43 43 H 1.09004 * 117.49921 * 359.97438 * 25 23 22 44 44 H 1.08998 * 110.36728 * 274.74793 * 26 17 15 45 45 H 1.08994 * 110.37060 * 37.07485 * 26 17 15 46 46 H 1.07998 * 120.15774 * 179.70537 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3966 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0581 -1.2291 0.2514 9 6 1.3402 -2.4137 -0.3307 10 6 0.2413 -2.3948 -1.2103 11 6 -0.4035 -3.5687 -1.5275 12 6 0.0201 -4.7691 -0.9809 13 6 1.1092 -4.8039 -0.1140 14 7 1.5323 -6.0229 0.4279 15 6 1.4187 -7.1562 -0.2927 16 8 1.0370 -7.1077 -1.4460 17 7 1.7286 -8.3434 0.2652 18 6 2.1998 -8.5457 1.6431 19 6 2.4496 -10.0577 1.8244 20 6 2.6461 -10.5547 0.3679 21 1 3.6690 -10.3852 0.0318 22 6 2.2663 -12.0309 0.2362 23 6 2.5898 -12.5166 -1.1782 24 6 1.4200 -12.9681 -2.0549 25 6 2.3887 -14.0034 -1.4778 26 6 1.6450 -9.6547 -0.4032 27 6 1.7699 -3.6350 0.2168 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0952 -1.4608 -1.6355 30 1 -1.2468 -3.5533 -2.2021 31 1 -0.4952 -5.6844 -1.2320 32 1 1.9071 -6.0523 1.3220 33 1 3.1269 -7.9950 1.8025 34 1 1.4400 -8.2083 2.3480 35 1 3.3485 -10.2318 2.4159 36 1 1.5871 -10.5385 2.2860 37 1 2.8320 -12.6176 0.9601 38 1 1.1996 -12.1501 0.4262 39 1 3.4217 -12.0122 -1.6696 40 1 0.4200 -12.9195 -1.6239 41 1 1.4825 -12.7611 -3.1232 42 1 3.0881 -14.4771 -2.1668 43 1 2.0263 -14.6357 -0.6672 44 1 0.6344 -10.0556 -0.3270 45 1 1.9416 -9.5674 -1.4484 46 1 2.6117 -3.6604 0.8929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582404102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:02 Heat of formation + Delta-G solvation = 10.821535 kcal Electronic energy + Delta-G solvation = -25160.975837 eV Core-core repulsion = 21629.555514 eV Total energy + Delta-G solvation = -3531.420323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30080 -38.69854 -37.47887 -36.66769 -34.33999 -33.19698 -32.36946 -29.80965 -29.72057 -28.32077 -26.46737 -25.16068 -23.52183 -22.64523 -21.25597 -21.02428 -20.84497 -20.45164 -19.35239 -17.94135 -17.42499 -16.45102 -15.77682 -15.51330 -15.14220 -15.05693 -14.62909 -14.50301 -14.29082 -13.81220 -13.42547 -13.04582 -12.94583 -12.85701 -12.75918 -12.30603 -12.15864 -11.97772 -11.80141 -11.62417 -11.51610 -11.33714 -11.10302 -11.06788 -10.93630 -10.58930 -10.53809 -10.41071 -10.14938 -10.13636 -9.67429 -9.49874 -9.20461 -8.90060 -8.52632 -7.38115 -6.79823 -6.68515 -4.32021 2.73445 2.85774 2.94830 3.11445 3.16891 3.25442 3.49304 3.70338 3.98939 4.09622 4.28562 4.37883 4.47482 4.63446 4.68907 4.72289 4.78159 5.00648 5.07275 5.17322 5.34340 5.35588 5.44860 5.48217 5.53827 5.63492 5.65628 5.72540 5.77700 5.83042 5.85456 5.95323 6.07162 6.21720 6.36957 6.61319 6.80678 6.95866 7.00535 7.08901 7.26775 7.42189 7.68245 7.84523 8.07792 8.12095 8.27798 8.44292 8.67296 8.92834 8.97256 9.07133 10.28521 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.002298 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.468283 B =12181.736916 C =12625.738585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.469 4.469 8 H 0.077 0.923 9 C 0.125 3.875 10 C -0.163 4.163 11 C -0.096 4.096 12 C -0.222 4.222 13 C 0.170 3.830 14 N -0.678 5.678 15 C 0.717 3.283 16 O -0.570 6.570 17 N -0.642 5.642 18 C 0.097 3.903 19 C -0.125 4.125 20 C -0.099 4.099 21 H 0.086 0.914 22 C -0.076 4.076 23 C -0.153 4.153 24 C -0.179 4.179 25 C -0.184 4.184 26 C 0.135 3.865 27 C -0.244 4.244 28 H 0.278 0.722 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.395 0.605 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -21.700 3.990 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.095 0.905 9 C 0.122 3.878 10 C -0.183 4.183 11 C -0.115 4.115 12 C -0.243 4.243 13 C 0.078 3.922 14 N -0.324 5.324 15 C 0.420 3.580 16 O -0.446 6.446 17 N -0.382 5.382 18 C -0.026 4.026 19 C -0.163 4.163 20 C -0.118 4.118 21 H 0.105 0.895 22 C -0.114 4.114 23 C -0.172 4.172 24 C -0.216 4.216 25 C -0.221 4.221 26 C 0.011 3.989 27 C -0.266 4.266 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.020 -21.442 3.119 22.037 hybrid contribution 0.531 0.781 0.562 1.099 sum 4.552 -20.661 3.682 21.475 Atomic orbital electron populations 1.69831 1.07442 1.28921 1.36419 1.25848 0.94728 1.01066 0.92381 0.86295 0.80924 0.81206 0.78437 1.18531 1.19802 1.20139 1.19489 0.97230 0.90821 1.42350 0.90537 1.17346 0.90914 0.91331 0.88220 1.21274 0.99743 0.96513 1.00753 1.20580 0.98806 0.92821 0.99318 1.20365 1.00035 0.97395 1.06499 1.17251 0.94683 0.82315 0.97988 1.42635 1.65739 1.05516 1.18502 1.15480 0.78841 0.79263 0.84421 1.90937 1.52729 1.85018 1.15871 1.47616 1.71654 1.05426 1.13533 1.21983 0.99372 0.97102 0.84160 1.22663 1.02679 0.94099 0.96844 1.22452 0.99956 0.94246 0.95196 0.89541 1.21112 1.01525 0.94077 0.94660 1.22367 1.00915 0.96897 0.96975 1.23057 0.95121 1.03777 0.99678 1.22973 1.03444 0.92029 1.03644 1.22094 0.98487 0.80853 0.97423 1.20699 1.04720 0.92134 1.09039 0.91078 0.86781 0.89022 0.87905 0.77074 0.91671 0.91602 0.90016 0.90436 0.90999 0.91352 0.87709 0.88741 0.88835 0.89004 0.88934 0.91908 0.90461 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 11.15 55.55 0.62 -20.45 16 2 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.60 9.04 -37.74 -0.34 -12.94 16 8 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 9 C 0.12 3.40 5.52 -106.85 -0.59 2.81 16 10 C -0.16 -4.39 8.66 -38.85 -0.34 -4.72 16 11 C -0.10 -2.42 10.02 -39.69 -0.40 -2.82 16 12 C -0.22 -5.52 8.66 -39.10 -0.34 -5.86 16 13 C 0.17 4.02 6.27 -83.76 -0.53 3.50 16 14 N -0.68 -13.06 5.29 -14.27 -0.08 -13.13 16 15 C 0.72 13.77 8.23 -86.91 -0.71 13.06 16 16 O -0.57 -13.26 14.26 5.29 0.08 -13.18 16 17 N -0.64 -9.06 3.32 -176.10 -0.59 -9.65 16 18 C 0.10 0.97 6.16 -3.07 -0.02 0.95 16 19 C -0.12 -0.89 6.41 -24.90 -0.16 -1.05 16 20 C -0.10 -0.79 2.99 -88.35 -0.26 -1.06 16 21 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 22 C -0.08 -0.50 5.01 -26.73 -0.13 -0.63 16 23 C -0.15 -1.10 5.50 -90.63 -0.50 -1.60 16 24 C -0.18 -1.33 10.18 -26.70 -0.27 -1.60 16 25 C -0.18 -1.20 10.25 -26.70 -0.27 -1.47 16 26 C 0.13 1.58 6.14 -2.41 -0.01 1.56 16 27 C -0.24 -6.08 9.70 -38.69 -0.38 -6.45 16 28 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 29 H 0.11 3.13 6.43 -52.48 -0.34 2.80 16 30 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 31 H 0.10 2.57 6.39 -52.49 -0.34 2.23 16 32 H 0.40 6.26 7.80 -40.82 -0.32 5.94 16 33 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.45 7.70 -51.93 -0.40 0.05 16 39 H 0.10 0.79 8.06 -51.93 -0.42 0.37 16 40 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 45 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 46 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -31.70 374.60 -11.94 -43.64 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.25 Total: 9.66 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -5.34 Total: -16.47 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.04 Total: -43.23 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.70 -11.94 -43.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582404102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.458 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds