Wall clock time and date at job start Tue Mar 31 2020 10:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86797 * 119.99512 * 2 1 4 4 H 1.48499 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47498 * 300.00117 * 3 2 1 6 6 H 1.48502 * 109.47256 * 60.00293 * 3 2 1 7 7 C 1.39927 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99703 * 195.62815 * 7 2 1 9 9 C 1.41411 * 120.00234 * 15.61580 * 7 2 1 10 10 C 1.40771 * 120.20845 * 29.19674 * 9 7 2 11 11 C 1.37634 * 119.88610 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31968 * 0.27316 * 11 10 9 13 13 C 1.39239 * 120.42888 * 359.44833 * 12 11 10 14 14 N 1.39958 * 119.95217 * 180.27855 * 13 12 11 15 15 C 1.34779 * 119.99324 * 33.27664 * 14 13 12 16 16 O 1.21583 * 120.00684 * 5.15626 * 15 14 13 17 17 N 1.34783 * 119.99682 * 185.14739 * 15 14 13 18 18 C 1.47022 * 125.64754 * 0.02744 * 17 15 14 19 19 C 1.54318 * 107.26876 * 181.02163 * 18 17 15 20 20 C 1.55156 * 102.94701 * 22.19478 * 19 18 17 21 21 H 1.08997 * 111.00463 * 82.60931 * 20 19 18 22 22 C 1.52994 * 111.00746 * 206.42560 * 20 19 18 23 23 C 1.53001 * 109.47512 * 184.99851 * 22 20 19 24 24 C 1.52996 * 117.49838 * 243.74814 * 23 22 20 25 25 C 1.52991 * 117.50087 * 175.08690 * 23 22 20 26 26 C 1.47422 * 125.64623 * 179.71892 * 17 15 14 27 27 C 1.38281 * 120.10415 * 0.55069 * 13 12 11 28 28 H 0.96991 * 119.99968 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05611 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.84204 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78376 * 179.69998 * 12 11 10 32 32 H 0.96993 * 120.00702 * 213.28215 * 14 13 12 33 33 H 1.08999 * 109.88671 * 300.43854 * 18 17 15 34 34 H 1.08998 * 109.88365 * 61.60482 * 18 17 15 35 35 H 1.09003 * 110.72264 * 140.56141 * 19 18 17 36 36 H 1.09005 * 110.72151 * 263.64689 * 19 18 17 37 37 H 1.09004 * 109.46823 * 305.00009 * 22 20 19 38 38 H 1.09005 * 109.47459 * 64.99096 * 22 20 19 39 39 H 1.08998 * 115.54518 * 29.41304 * 23 22 20 40 40 H 1.09003 * 117.49790 * 359.97438 * 24 23 22 41 41 H 1.09001 * 117.49786 * 145.01932 * 24 23 22 42 42 H 1.09007 * 117.49937 * 214.98185 * 25 23 22 43 43 H 1.09004 * 117.49921 * 359.97438 * 25 23 22 44 44 H 1.08998 * 110.36728 * 274.74793 * 26 17 15 45 45 H 1.08994 * 110.37060 * 37.07485 * 26 17 15 46 46 H 1.07998 * 120.15774 * 179.70537 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3966 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0081 -1.2118 -0.0005 8 1 3.0581 -1.2291 0.2514 9 6 1.3402 -2.4137 -0.3307 10 6 0.2413 -2.3948 -1.2103 11 6 -0.4035 -3.5687 -1.5275 12 6 0.0201 -4.7691 -0.9809 13 6 1.1092 -4.8039 -0.1140 14 7 1.5323 -6.0229 0.4279 15 6 1.4187 -7.1562 -0.2927 16 8 1.0370 -7.1077 -1.4460 17 7 1.7286 -8.3434 0.2652 18 6 2.1998 -8.5457 1.6431 19 6 2.4496 -10.0577 1.8244 20 6 2.6461 -10.5547 0.3679 21 1 3.6690 -10.3852 0.0318 22 6 2.2663 -12.0309 0.2362 23 6 2.5898 -12.5166 -1.1782 24 6 1.4200 -12.9681 -2.0549 25 6 2.3887 -14.0034 -1.4778 26 6 1.6450 -9.6547 -0.4032 27 6 1.7699 -3.6350 0.2168 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0952 -1.4608 -1.6355 30 1 -1.2468 -3.5533 -2.2021 31 1 -0.4952 -5.6844 -1.2320 32 1 1.9071 -6.0523 1.3220 33 1 3.1269 -7.9950 1.8025 34 1 1.4400 -8.2083 2.3480 35 1 3.3485 -10.2318 2.4159 36 1 1.5871 -10.5385 2.2860 37 1 2.8320 -12.6176 0.9601 38 1 1.1996 -12.1501 0.4262 39 1 3.4217 -12.0122 -1.6696 40 1 0.4200 -12.9195 -1.6239 41 1 1.4825 -12.7611 -3.1232 42 1 3.0881 -14.4771 -2.1668 43 1 2.0263 -14.6357 -0.6672 44 1 0.6344 -10.0556 -0.3270 45 1 1.9416 -9.5674 -1.4484 46 1 2.6117 -3.6604 0.8929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582404102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:01 Heat of formation + Delta-G solvation = -5.433150 kcal Electronic energy + Delta-G solvation = -25161.680693 eV Core-core repulsion = 21629.555514 eV Total energy + Delta-G solvation = -3532.125179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65381 -39.85303 -38.84104 -37.75175 -36.12918 -34.93697 -33.45971 -31.76332 -30.55862 -30.01036 -27.47245 -27.13164 -24.56808 -23.20298 -22.94810 -22.72339 -21.64519 -21.18683 -20.82314 -19.49316 -19.02651 -17.52459 -17.34062 -16.82207 -16.56945 -16.36025 -16.05692 -15.96697 -15.22576 -14.91383 -14.68475 -14.59818 -14.19722 -14.07273 -13.97488 -13.58811 -13.53483 -13.16115 -13.04955 -12.79800 -12.58451 -12.51314 -12.38822 -12.32958 -12.18862 -11.92851 -11.71821 -11.58671 -11.54155 -11.27862 -11.08158 -10.96552 -10.77410 -10.68705 -9.72128 -9.38908 -8.67890 -8.61018 -6.36141 0.91978 0.96902 1.40893 1.48846 1.55445 1.58881 2.11698 2.23981 2.77955 2.93826 2.99173 3.52872 3.64206 3.70855 3.74563 4.07209 4.12361 4.18226 4.27826 4.39080 4.42486 4.49515 4.62166 4.67118 4.74630 4.80550 4.83934 4.93015 4.96413 4.99969 5.01182 5.06462 5.10740 5.11647 5.13458 5.19571 5.29732 5.31044 5.34715 5.40058 5.50529 5.74041 5.80275 6.02048 6.08261 6.16593 6.35150 6.67047 6.90841 6.94295 7.00628 7.50914 8.38400 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.002298 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.468283 B =12181.736916 C =12625.738585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.189 4.189 11 C -0.097 4.097 12 C -0.236 4.236 13 C 0.181 3.819 14 N -0.670 5.670 15 C 0.711 3.289 16 O -0.618 6.618 17 N -0.636 5.636 18 C 0.085 3.915 19 C -0.113 4.113 20 C -0.086 4.086 21 H 0.087 0.913 22 C -0.068 4.068 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.174 4.174 26 C 0.127 3.873 27 C -0.254 4.254 28 H 0.288 0.712 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -22.932 5.949 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.096 3.904 10 C -0.209 4.209 11 C -0.116 4.116 12 C -0.257 4.257 13 C 0.087 3.913 14 N -0.318 5.318 15 C 0.413 3.587 16 O -0.498 6.498 17 N -0.374 5.374 18 C -0.037 4.037 19 C -0.150 4.150 20 C -0.106 4.106 21 H 0.105 0.895 22 C -0.106 4.106 23 C -0.178 4.178 24 C -0.232 4.232 25 C -0.210 4.210 26 C 0.005 3.995 27 C -0.276 4.276 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.250 0.750 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.403 -22.749 5.136 23.939 hybrid contribution 0.080 1.033 -0.046 1.037 sum 5.483 -21.715 5.091 22.968 Atomic orbital electron populations 1.69887 1.08998 1.30477 1.36227 1.26757 0.95523 1.04477 0.91232 0.85132 0.79390 0.76150 0.78835 1.18093 1.19156 1.18988 1.19760 0.97546 0.91796 1.43750 0.90313 1.17731 0.91420 0.92611 0.88670 1.21207 1.01016 0.96469 1.02178 1.20792 0.99055 0.92501 0.99265 1.20465 1.00863 0.97049 1.07343 1.17252 0.93599 0.83682 0.96762 1.42418 1.65697 1.04395 1.19250 1.15670 0.78727 0.80329 0.83933 1.90896 1.54868 1.85972 1.18068 1.47669 1.69873 1.04384 1.15453 1.22366 0.99949 0.99769 0.81588 1.22690 1.04604 0.91475 0.96259 1.22387 0.98633 0.94340 0.95200 0.89505 1.21083 1.02011 0.92951 0.94554 1.22421 1.00417 0.97585 0.97375 1.23097 0.95485 1.05177 0.99470 1.23036 1.02649 0.91673 1.03686 1.22320 0.99915 0.80465 0.96818 1.20848 1.05338 0.91942 1.09496 0.90193 0.88167 0.87226 0.88192 0.75006 0.90649 0.90768 0.87307 0.89037 0.88902 0.91092 0.88419 0.88709 0.89628 0.88625 0.87788 0.91691 0.92832 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.27 11.15 21.82 0.24 -44.02 16 2 C 0.03 1.76 5.15 85.25 0.44 2.20 16 3 Si 0.98 38.65 29.59 68.60 2.03 40.68 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.50 -27.23 9.04 23.46 0.21 -27.02 16 8 H 0.08 4.12 7.89 -2.91 -0.02 4.09 16 9 C 0.10 5.51 5.52 -21.31 -0.12 5.39 16 10 C -0.19 -10.52 8.66 22.75 0.20 -10.32 16 11 C -0.10 -5.03 10.02 22.20 0.22 -4.81 16 12 C -0.24 -12.02 8.66 22.58 0.20 -11.83 16 13 C 0.18 8.66 6.27 38.09 0.24 8.90 16 14 N -0.67 -25.58 5.29 -317.32 -1.68 -27.26 16 15 C 0.71 27.35 8.23 179.05 1.47 28.82 16 16 O -0.62 -29.56 14.26 -3.98 -0.06 -29.62 16 17 N -0.64 -17.32 3.32 -829.32 -2.76 -20.08 16 18 C 0.09 1.47 6.16 86.73 0.53 2.00 16 19 C -0.11 -1.16 6.41 31.78 0.20 -0.96 16 20 C -0.09 -1.16 2.99 -9.32 -0.03 -1.19 16 21 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 22 C -0.07 -0.70 5.01 30.59 0.15 -0.55 16 23 C -0.16 -2.07 5.50 -10.80 -0.06 -2.13 16 24 C -0.20 -2.79 10.18 30.62 0.31 -2.48 16 25 C -0.17 -1.96 10.25 30.61 0.31 -1.65 16 26 C 0.13 2.89 6.14 86.94 0.53 3.43 16 27 C -0.25 -12.83 9.70 22.85 0.22 -12.60 16 28 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 29 H 0.10 5.75 6.43 -2.91 -0.02 5.73 16 30 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.10 5.13 6.39 -2.91 -0.02 5.11 16 32 H 0.41 12.55 7.80 -92.71 -0.72 11.83 16 33 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.76 8.04 -2.38 -0.02 0.74 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.73 7.70 -2.38 -0.02 0.71 16 39 H 0.10 1.40 8.06 -2.39 -0.02 1.38 16 40 H 0.09 1.32 8.03 -2.39 -0.02 1.30 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 1.45 7.91 -2.39 -0.02 1.43 16 45 H 0.05 1.47 8.03 -2.39 -0.02 1.45 16 46 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -71.01 374.60 3.08 -67.93 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.25 Total: 37.15 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 5.05 Total: -24.79 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -4.19 Total: -91.36 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.06 Total: -29.62 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -71.01 3.08 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582404102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.501 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds