Wall clock time and date at job start Tue Mar 31 2020 10:57:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30824 * 1
3 3 Si 1.86803 * 120.00235 * 2 1
4 4 H 1.48493 * 109.47226 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47114 * 300.00578 * 3 2 1
6 6 H 1.48506 * 109.46775 * 60.00270 * 3 2 1
7 7 C 1.39932 * 119.99919 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99982 * 196.79067 * 7 2 1
9 9 C 1.41403 * 120.00132 * 16.79727 * 7 2 1
10 10 C 1.40778 * 120.21079 * 25.14561 * 9 7 2
11 11 C 1.37644 * 119.88491 * 180.02562 * 10 9 7
12 12 C 1.38531 * 120.31968 * 359.74491 * 11 10 9
13 13 C 1.39244 * 120.42799 * 0.51463 * 12 11 10
14 14 N 1.39955 * 119.94440 * 179.76010 * 13 12 11
15 15 C 1.34777 * 120.00179 * 325.51998 * 14 13 12
16 16 O 1.21593 * 119.99955 * 354.84880 * 15 14 13
17 17 N 1.34779 * 120.00257 * 174.84737 * 15 14 13
18 18 C 1.47020 * 125.64561 * 359.97438 * 17 15 14
19 19 C 1.54329 * 107.27028 * 178.95840 * 18 17 15
20 20 C 1.55271 * 103.00759 * 337.88156 * 19 18 17
21 21 H 1.08994 * 110.96007 * 277.33598 * 20 19 18
22 22 C 1.52994 * 111.10036 * 153.44646 * 20 19 18
23 23 C 1.53008 * 109.47232 * 181.36171 * 22 20 19
24 24 C 1.53000 * 117.49814 * 243.62456 * 23 22 20
25 25 C 1.53004 * 117.49861 * 175.00140 * 23 22 20
26 26 C 1.47421 * 125.64992 * 179.97438 * 17 15 14
27 27 C 1.38265 * 120.10867 * 359.48668 * 13 12 11
28 28 H 0.96999 * 119.99985 * 359.97438 * 1 2 3
29 29 H 1.07995 * 120.05707 * 0.05161 * 10 9 7
30 30 H 1.08001 * 119.83875 * 179.97438 * 11 10 9
31 31 H 1.07999 * 119.78397 * 180.27744 * 12 11 10
32 32 H 0.96992 * 120.00056 * 145.52102 * 14 13 12
33 33 H 1.09000 * 109.87851 * 298.37379 * 18 17 15
34 34 H 1.09001 * 109.88751 * 59.54149 * 18 17 15
35 35 H 1.08999 * 110.71858 * 96.16826 * 19 18 17
36 36 H 1.09000 * 110.71818 * 219.44064 * 19 18 17
37 37 H 1.08996 * 109.47679 * 301.36284 * 22 20 19
38 38 H 1.09002 * 109.47490 * 61.36613 * 22 20 19
39 39 H 1.08996 * 115.54982 * 29.32946 * 23 22 20
40 40 H 1.09003 * 117.49736 * 359.97438 * 24 23 22
41 41 H 1.09000 * 117.49834 * 145.01700 * 24 23 22
42 42 H 1.08996 * 117.49654 * 214.97619 * 25 23 22
43 43 H 1.08995 * 117.49843 * 0.02562 * 25 23 22
44 44 H 1.09004 * 110.37169 * 322.95079 * 26 17 15
45 45 H 1.08998 * 110.36643 * 85.16046 * 26 17 15
46 46 H 1.08000 * 120.16424 * 180.27490 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7022 1.3464 -0.0006
5 1 1.8835 2.3965 -1.2124
6 1 1.8836 2.3964 1.2126
7 6 2.0079 -1.2119 -0.0005
8 1 3.0534 -1.2319 0.2696
9 6 1.3461 -2.4102 -0.3550
10 6 0.2106 -2.3731 -1.1863
11 6 -0.4287 -3.5436 -1.5266
12 6 0.0429 -4.7594 -1.0593
13 6 1.1617 -4.8110 -0.2320
14 7 1.6266 -6.0445 0.2384
15 6 0.7525 -7.0304 0.5220
16 8 -0.4434 -6.8193 0.4593
17 7 1.2038 -8.2502 0.8751
18 6 2.6165 -8.6411 0.9894
19 6 2.6486 -10.1157 1.4437
20 6 1.2569 -10.3080 2.1050
21 1 1.2617 -9.9501 3.1345
22 6 0.8123 -11.7703 2.0371
23 6 -0.5748 -11.9114 2.6674
24 6 -0.6948 -12.7744 3.9251
25 6 -1.2486 -13.2831 2.5926
26 6 0.3628 -9.4136 1.2106
27 6 1.8176 -3.6461 0.1210
28 1 -0.4850 0.8400 0.0004
29 1 -0.1580 -1.4280 -1.5566
30 1 -1.3000 -3.5143 -2.1641
31 1 -0.4627 -5.6729 -1.3354
32 1 2.5777 -6.1898 0.3602
33 1 3.1084 -8.5404 0.0220
34 1 3.1159 -8.0146 1.7285
35 1 2.7619 -10.7806 0.5874
36 1 3.4464 -10.2787 2.1682
37 1 0.7724 -12.0901 0.9959
38 1 1.5234 -12.3920 2.5811
39 1 -1.2147 -11.0319 2.5973
40 1 0.2143 -13.2420 4.3033
41 1 -1.4137 -12.4625 4.6828
42 1 -2.3318 -13.3058 2.4736
43 1 -0.7036 -14.0850 2.0948
44 1 -0.5241 -9.0952 1.7586
45 1 0.0765 -9.9485 0.3051
46 1 2.6881 -3.6854 0.7591
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000582404103.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:07
Heat of formation + Delta-G solvation = 10.981002 kcal
Electronic energy + Delta-G solvation = -25123.388806 eV
Core-core repulsion = 21591.975399 eV
Total energy + Delta-G solvation = -3531.413408 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.29259 -38.69194 -37.48025 -36.66890 -34.35283 -33.20630 -32.36388 -29.83425
-29.74232 -28.28359 -26.39937 -25.17293 -23.59263 -22.67916 -21.28249 -21.12362
-20.86416 -20.18705 -19.32615 -17.95037 -17.43453 -16.67097 -15.57933 -15.53130
-15.14875 -15.00452 -14.61945 -14.46726 -14.35877 -13.97534 -13.41371 -13.04315
-12.87395 -12.83279 -12.57463 -12.31225 -12.22455 -12.14931 -11.82276 -11.61956
-11.53234 -11.14885 -11.11990 -11.01712 -10.88125 -10.84386 -10.45667 -10.42144
-10.17251 -10.15843 -9.56693 -9.50903 -9.17221 -8.90992 -8.52322 -7.40523
-6.84168 -6.66929 -4.31169 2.74522 2.84765 2.95953 3.10466 3.15616
3.25804 3.49340 3.71666 3.96958 4.05563 4.31476 4.39832 4.51756
4.63015 4.66516 4.71440 4.78213 4.97592 5.04935 5.17515 5.33225
5.41534 5.43912 5.48097 5.53192 5.61454 5.63441 5.72915 5.76383
5.81270 5.83493 6.00465 6.07207 6.22851 6.38038 6.62760 6.82965
6.97105 7.01724 7.08911 7.28454 7.43199 7.68673 7.85978 8.08201
8.13851 8.28524 8.45005 8.67964 8.93132 8.97031 9.08629 10.25722
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.029401 B = 0.002283 C = 0.002229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 952.116212 B =12259.212447 C =12559.863004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.794 5.794
2 C 0.075 3.925
3 Si 0.907 3.093
4 H -0.261 1.261
5 H -0.272 1.272
6 H -0.275 1.275
7 C -0.465 4.465
8 H 0.077 0.923
9 C 0.123 3.877
10 C -0.169 4.169
11 C -0.095 4.095
12 C -0.226 4.226
13 C 0.171 3.829
14 N -0.678 5.678
15 C 0.717 3.283
16 O -0.569 6.569
17 N -0.642 5.642
18 C 0.098 3.902
19 C -0.125 4.125
20 C -0.100 4.100
21 H 0.086 0.914
22 C -0.075 4.075
23 C -0.155 4.155
24 C -0.182 4.182
25 C -0.182 4.182
26 C 0.132 3.868
27 C -0.246 4.246
28 H 0.279 0.721
29 H 0.119 0.881
30 H 0.091 0.909
31 H 0.101 0.899
32 H 0.395 0.605
33 H 0.066 0.934
34 H 0.065 0.935
35 H 0.077 0.923
36 H 0.081 0.919
37 H 0.070 0.930
38 H 0.068 0.932
39 H 0.108 0.892
40 H 0.093 0.907
41 H 0.092 0.908
42 H 0.093 0.907
43 H 0.093 0.907
44 H 0.076 0.924
45 H 0.064 0.936
46 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.540 -21.517 4.280 22.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.420 5.420
2 C -0.142 4.142
3 Si 0.732 3.268
4 H -0.185 1.185
5 H -0.198 1.198
6 H -0.201 1.201
7 C -0.495 4.495
8 H 0.095 0.905
9 C 0.120 3.880
10 C -0.189 4.189
11 C -0.114 4.114
12 C -0.247 4.247
13 C 0.079 3.921
14 N -0.324 5.324
15 C 0.420 3.580
16 O -0.444 6.444
17 N -0.382 5.382
18 C -0.026 4.026
19 C -0.162 4.162
20 C -0.119 4.119
21 H 0.105 0.895
22 C -0.112 4.112
23 C -0.173 4.173
24 C -0.219 4.219
25 C -0.219 4.219
26 C 0.009 3.991
27 C -0.268 4.268
28 H 0.090 0.910
29 H 0.137 0.863
30 H 0.109 0.891
31 H 0.119 0.881
32 H 0.229 0.771
33 H 0.084 0.916
34 H 0.083 0.917
35 H 0.096 0.904
36 H 0.100 0.900
37 H 0.089 0.911
38 H 0.087 0.913
39 H 0.126 0.874
40 H 0.111 0.889
41 H 0.110 0.890
42 H 0.111 0.889
43 H 0.111 0.889
44 H 0.095 0.905
45 H 0.082 0.918
46 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 3.419 -21.136 4.212 21.821
hybrid contribution 0.801 0.698 0.234 1.088
sum 4.220 -20.439 4.446 21.338
Atomic orbital electron populations
1.69847 1.07519 1.28966 1.35670 1.25889 0.94717 1.01214 0.92367
0.86284 0.80911 0.81130 0.78482 1.18489 1.19765 1.20095 1.19520
0.97652 0.90981 1.41305 0.90510 1.17362 0.91047 0.91268 0.88369
1.21356 0.99269 0.96842 1.01440 1.20580 0.98382 0.92787 0.99623
1.20325 1.01031 0.97306 1.06041 1.17234 0.96887 0.81997 0.95968
1.42618 1.08743 1.12348 1.68717 1.15483 0.85313 0.79037 0.78180
1.90950 1.13890 1.80787 1.58815 1.47596 1.06975 1.09834 1.73787
1.21983 0.83485 0.96073 1.01036 1.22682 0.97479 0.95172 1.00906
1.22393 0.94638 0.95008 0.99857 0.89517 1.21103 0.94157 0.94992
1.00982 1.22414 0.98369 0.95134 1.01404 1.23036 1.03205 1.04266
0.91361 1.22958 1.00521 0.97458 1.00995 1.22066 0.94038 0.84940
0.98059 1.20668 1.05770 0.91331 1.08996 0.91003 0.86331 0.89084
0.88131 0.77132 0.91604 0.91690 0.90430 0.90020 0.91122 0.91309
0.87420 0.88887 0.88957 0.88872 0.88894 0.90542 0.91815 0.88810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -21.07 10.94 55.55 0.61 -20.46 16
2 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16
3 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16
4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16
5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
6 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16
7 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16
8 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16
9 C 0.12 3.34 5.57 -106.85 -0.59 2.75 16
10 C -0.17 -4.57 8.69 -38.84 -0.34 -4.91 16
11 C -0.09 -2.39 10.02 -39.69 -0.40 -2.79 16
12 C -0.23 -5.64 8.66 -39.10 -0.34 -5.98 16
13 C 0.17 4.07 6.25 -83.76 -0.52 3.55 16
14 N -0.68 -13.11 5.29 -14.27 -0.08 -13.18 16
15 C 0.72 13.94 8.22 -86.92 -0.71 13.22 16
16 O -0.57 -13.50 14.35 5.28 0.08 -13.42 16
17 N -0.64 -9.14 3.33 -176.24 -0.59 -9.72 16
18 C 0.10 0.97 6.17 -3.06 -0.02 0.95 16
19 C -0.12 -0.89 6.43 -24.83 -0.16 -1.05 16
20 C -0.10 -0.81 3.07 -88.42 -0.27 -1.08 16
21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
22 C -0.07 -0.50 5.02 -26.73 -0.13 -0.63 16
23 C -0.16 -1.16 5.56 -90.61 -0.50 -1.67 16
24 C -0.18 -1.24 10.18 -26.73 -0.27 -1.51 16
25 C -0.18 -1.24 10.25 -26.73 -0.27 -1.52 16
26 C 0.13 1.56 5.69 -2.54 -0.01 1.55 16
27 C -0.25 -6.14 9.70 -38.69 -0.38 -6.51 16
28 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16
29 H 0.12 3.27 6.17 -52.49 -0.32 2.94 16
30 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16
31 H 0.10 2.52 6.48 -52.49 -0.34 2.18 16
32 H 0.39 6.20 7.80 -40.82 -0.32 5.88 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
34 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16
35 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16
36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16
38 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16
39 H 0.11 0.92 7.17 -51.93 -0.37 0.55 16
40 H 0.09 0.56 8.03 -51.93 -0.42 0.15 16
41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16
44 H 0.08 1.02 7.61 -51.93 -0.39 0.62 16
45 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16
46 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16
LS Contribution 373.03 15.07 5.62 5.62
Total: -1.00 -32.02 373.03 -11.93 -43.95
By element:
Atomic # 1 Polarization: 17.15 SS G_CDS: -7.18 Total: 9.97 kcal
Atomic # 6 Polarization: -11.24 SS G_CDS: -5.36 Total: -16.60 kcal
Atomic # 7 Polarization: -43.31 SS G_CDS: -0.05 Total: -43.36 kcal
Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal
Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -32.02 -11.93 -43.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582404103.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.932 kcal
(2) G-P(sol) polarization free energy of solvation -32.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds