Wall clock time and date at job start Tue Mar 31 2020 10:57:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30824 * 1
3 3 Si 1.86803 * 120.00235 * 2 1
4 4 H 1.48493 * 109.47226 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47114 * 300.00578 * 3 2 1
6 6 H 1.48506 * 109.46775 * 60.00270 * 3 2 1
7 7 C 1.39932 * 119.99919 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99982 * 196.79067 * 7 2 1
9 9 C 1.41403 * 120.00132 * 16.79727 * 7 2 1
10 10 C 1.40778 * 120.21079 * 25.14561 * 9 7 2
11 11 C 1.37644 * 119.88491 * 180.02562 * 10 9 7
12 12 C 1.38531 * 120.31968 * 359.74491 * 11 10 9
13 13 C 1.39244 * 120.42799 * 0.51463 * 12 11 10
14 14 N 1.39955 * 119.94440 * 179.76010 * 13 12 11
15 15 C 1.34777 * 120.00179 * 325.51998 * 14 13 12
16 16 O 1.21593 * 119.99955 * 354.84880 * 15 14 13
17 17 N 1.34779 * 120.00257 * 174.84737 * 15 14 13
18 18 C 1.47020 * 125.64561 * 359.97438 * 17 15 14
19 19 C 1.54329 * 107.27028 * 178.95840 * 18 17 15
20 20 C 1.55271 * 103.00759 * 337.88156 * 19 18 17
21 21 H 1.08994 * 110.96007 * 277.33598 * 20 19 18
22 22 C 1.52994 * 111.10036 * 153.44646 * 20 19 18
23 23 C 1.53008 * 109.47232 * 181.36171 * 22 20 19
24 24 C 1.53000 * 117.49814 * 243.62456 * 23 22 20
25 25 C 1.53004 * 117.49861 * 175.00140 * 23 22 20
26 26 C 1.47421 * 125.64992 * 179.97438 * 17 15 14
27 27 C 1.38265 * 120.10867 * 359.48668 * 13 12 11
28 28 H 0.96999 * 119.99985 * 359.97438 * 1 2 3
29 29 H 1.07995 * 120.05707 * 0.05161 * 10 9 7
30 30 H 1.08001 * 119.83875 * 179.97438 * 11 10 9
31 31 H 1.07999 * 119.78397 * 180.27744 * 12 11 10
32 32 H 0.96992 * 120.00056 * 145.52102 * 14 13 12
33 33 H 1.09000 * 109.87851 * 298.37379 * 18 17 15
34 34 H 1.09001 * 109.88751 * 59.54149 * 18 17 15
35 35 H 1.08999 * 110.71858 * 96.16826 * 19 18 17
36 36 H 1.09000 * 110.71818 * 219.44064 * 19 18 17
37 37 H 1.08996 * 109.47679 * 301.36284 * 22 20 19
38 38 H 1.09002 * 109.47490 * 61.36613 * 22 20 19
39 39 H 1.08996 * 115.54982 * 29.32946 * 23 22 20
40 40 H 1.09003 * 117.49736 * 359.97438 * 24 23 22
41 41 H 1.09000 * 117.49834 * 145.01700 * 24 23 22
42 42 H 1.08996 * 117.49654 * 214.97619 * 25 23 22
43 43 H 1.08995 * 117.49843 * 0.02562 * 25 23 22
44 44 H 1.09004 * 110.37169 * 322.95079 * 26 17 15
45 45 H 1.08998 * 110.36643 * 85.16046 * 26 17 15
46 46 H 1.08000 * 120.16424 * 180.27490 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7022 1.3464 -0.0006
5 1 1.8835 2.3965 -1.2124
6 1 1.8836 2.3964 1.2126
7 6 2.0079 -1.2119 -0.0005
8 1 3.0534 -1.2319 0.2696
9 6 1.3461 -2.4102 -0.3550
10 6 0.2106 -2.3731 -1.1863
11 6 -0.4287 -3.5436 -1.5266
12 6 0.0429 -4.7594 -1.0593
13 6 1.1617 -4.8110 -0.2320
14 7 1.6266 -6.0445 0.2384
15 6 0.7525 -7.0304 0.5220
16 8 -0.4434 -6.8193 0.4593
17 7 1.2038 -8.2502 0.8751
18 6 2.6165 -8.6411 0.9894
19 6 2.6486 -10.1157 1.4437
20 6 1.2569 -10.3080 2.1050
21 1 1.2617 -9.9501 3.1345
22 6 0.8123 -11.7703 2.0371
23 6 -0.5748 -11.9114 2.6674
24 6 -0.6948 -12.7744 3.9251
25 6 -1.2486 -13.2831 2.5926
26 6 0.3628 -9.4136 1.2106
27 6 1.8176 -3.6461 0.1210
28 1 -0.4850 0.8400 0.0004
29 1 -0.1580 -1.4280 -1.5566
30 1 -1.3000 -3.5143 -2.1641
31 1 -0.4627 -5.6729 -1.3354
32 1 2.5777 -6.1898 0.3602
33 1 3.1084 -8.5404 0.0220
34 1 3.1159 -8.0146 1.7285
35 1 2.7619 -10.7806 0.5874
36 1 3.4464 -10.2787 2.1682
37 1 0.7724 -12.0901 0.9959
38 1 1.5234 -12.3920 2.5811
39 1 -1.2147 -11.0319 2.5973
40 1 0.2143 -13.2420 4.3033
41 1 -1.4137 -12.4625 4.6828
42 1 -2.3318 -13.3058 2.4736
43 1 -0.7036 -14.0850 2.0948
44 1 -0.5241 -9.0952 1.7586
45 1 0.0765 -9.9485 0.3051
46 1 2.6881 -3.6854 0.7591
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000582404103.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:06
Heat of formation + Delta-G solvation = -5.726096 kcal
Electronic energy + Delta-G solvation = -25124.113280 eV
Core-core repulsion = 21591.975399 eV
Total energy + Delta-G solvation = -3532.137882 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.65419 -39.85547 -38.84564 -37.76514 -36.15560 -34.94767 -33.46558 -31.77533
-30.60364 -29.98700 -27.41572 -27.13583 -24.62466 -23.20276 -22.97101 -22.74297
-21.80443 -21.10609 -20.64217 -19.50613 -19.04348 -17.62941 -17.37300 -16.83777
-16.62354 -16.35252 -16.08935 -15.70006 -15.16406 -15.05731 -14.78765 -14.66533
-14.21585 -14.09187 -13.94770 -13.55553 -13.28100 -13.10074 -12.95842 -12.88443
-12.82834 -12.73820 -12.33777 -12.29938 -12.18490 -11.92563 -11.66359 -11.53336
-11.46905 -11.27701 -11.08735 -10.97974 -10.77102 -10.71296 -9.72723 -9.42128
-8.73672 -8.58703 -6.35368 0.92818 0.96871 1.40443 1.50788 1.55883
1.57175 2.11579 2.22870 2.76917 2.93474 2.99508 3.46946 3.63883
3.72345 3.83138 4.05972 4.09392 4.18768 4.27688 4.37259 4.39835
4.46552 4.59917 4.67134 4.79137 4.82267 4.84304 4.93247 4.94070
5.00325 5.01600 5.06812 5.09671 5.11640 5.14005 5.17527 5.29898
5.31518 5.37051 5.41605 5.48987 5.74084 5.80289 6.03091 6.08429
6.18049 6.34749 6.67603 6.90978 6.93302 7.01052 7.51156 8.35751
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.029401 B = 0.002283 C = 0.002229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 952.116212 B =12259.212447 C =12559.863004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.827 5.827
2 C 0.032 3.968
3 Si 0.987 3.013
4 H -0.254 1.254
5 H -0.265 1.265
6 H -0.268 1.268
7 C -0.494 4.494
8 H 0.082 0.918
9 C 0.096 3.904
10 C -0.196 4.196
11 C -0.096 4.096
12 C -0.240 4.240
13 C 0.182 3.818
14 N -0.669 5.669
15 C 0.711 3.289
16 O -0.620 6.620
17 N -0.635 5.635
18 C 0.085 3.915
19 C -0.112 4.112
20 C -0.087 4.087
21 H 0.083 0.917
22 C -0.066 4.066
23 C -0.169 4.169
24 C -0.180 4.180
25 C -0.182 4.182
26 C 0.125 3.875
27 C -0.256 4.256
28 H 0.288 0.712
29 H 0.106 0.894
30 H 0.108 0.892
31 H 0.097 0.903
32 H 0.413 0.587
33 H 0.077 0.923
34 H 0.074 0.926
35 H 0.093 0.907
36 H 0.108 0.892
37 H 0.075 0.925
38 H 0.089 0.911
39 H 0.088 0.912
40 H 0.106 0.894
41 H 0.088 0.912
42 H 0.089 0.911
43 H 0.105 0.895
44 H 0.051 0.949
45 H 0.067 0.933
46 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.952 -22.957 5.004 24.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.453 5.453
2 C -0.183 4.183
3 Si 0.808 3.192
4 H -0.177 1.177
5 H -0.190 1.190
6 H -0.193 1.193
7 C -0.523 4.523
8 H 0.100 0.900
9 C 0.093 3.907
10 C -0.215 4.215
11 C -0.115 4.115
12 C -0.262 4.262
13 C 0.088 3.912
14 N -0.317 5.317
15 C 0.413 3.587
16 O -0.500 6.500
17 N -0.373 5.373
18 C -0.036 4.036
19 C -0.149 4.149
20 C -0.106 4.106
21 H 0.102 0.898
22 C -0.103 4.103
23 C -0.187 4.187
24 C -0.217 4.217
25 C -0.219 4.219
26 C 0.002 3.998
27 C -0.278 4.278
28 H 0.098 0.902
29 H 0.123 0.877
30 H 0.126 0.874
31 H 0.115 0.885
32 H 0.251 0.749
33 H 0.095 0.905
34 H 0.093 0.907
35 H 0.111 0.889
36 H 0.127 0.873
37 H 0.094 0.906
38 H 0.107 0.893
39 H 0.106 0.894
40 H 0.124 0.876
41 H 0.107 0.893
42 H 0.108 0.892
43 H 0.123 0.877
44 H 0.070 0.930
45 H 0.085 0.915
46 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 5.882 -22.658 4.955 23.927
hybrid contribution -0.005 1.019 0.047 1.020
sum 5.876 -21.639 5.002 22.974
Atomic orbital electron populations
1.69912 1.09211 1.30538 1.35677 1.26849 0.95495 1.04799 0.91162
0.85089 0.79496 0.75863 0.78795 1.17731 1.18981 1.19267 1.19826
0.98099 0.91878 1.42505 0.89975 1.17757 0.91538 0.92600 0.88798
1.21301 1.00443 0.96767 1.03035 1.20791 0.98701 0.92531 0.99509
1.20421 1.01847 0.96969 1.06917 1.17237 0.95892 0.83448 0.94607
1.42391 1.09816 1.11082 1.68432 1.15683 0.84565 0.80286 0.78161
1.90908 1.16077 1.82038 1.61000 1.47646 1.09603 1.08396 1.71699
1.22376 0.80690 0.98366 1.02204 1.22711 0.97214 0.93038 1.01974
1.22318 0.94442 0.95074 0.98773 0.89820 1.21066 0.93828 0.93919
1.01534 1.22417 0.98915 0.94852 1.02494 1.23108 1.03662 1.03808
0.91137 1.23027 1.00532 0.97230 1.01110 1.22294 0.94032 0.84658
0.98803 1.20823 1.06515 0.91072 1.09361 0.90150 0.87655 0.87358
0.88460 0.74935 0.90511 0.90739 0.88876 0.87336 0.90597 0.89272
0.89378 0.87577 0.89349 0.89232 0.87698 0.92991 0.91478 0.87170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -44.65 10.94 21.82 0.24 -44.41 16
2 C 0.03 1.62 5.16 85.25 0.44 2.06 16
3 Si 0.99 38.43 29.59 68.60 2.03 40.46 16
4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16
5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16
6 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16
7 C -0.49 -26.85 9.05 23.46 0.21 -26.63 16
8 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16
9 C 0.10 5.37 5.57 -21.31 -0.12 5.25 16
10 C -0.20 -10.94 8.69 22.75 0.20 -10.74 16
11 C -0.10 -5.02 10.02 22.20 0.22 -4.80 16
12 C -0.24 -12.32 8.66 22.58 0.20 -12.12 16
13 C 0.18 8.75 6.25 38.09 0.24 8.99 16
14 N -0.67 -25.67 5.29 -317.33 -1.68 -27.35 16
15 C 0.71 27.78 8.22 179.05 1.47 29.25 16
16 O -0.62 -30.40 14.35 -4.01 -0.06 -30.46 16
17 N -0.64 -17.56 3.33 -829.76 -2.76 -20.32 16
18 C 0.09 1.47 6.17 86.73 0.53 2.01 16
19 C -0.11 -1.16 6.43 31.82 0.20 -0.96 16
20 C -0.09 -1.21 3.07 -9.37 -0.03 -1.24 16
21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
22 C -0.07 -0.70 5.02 30.60 0.15 -0.55 16
23 C -0.17 -2.34 5.56 -10.79 -0.06 -2.40 16
24 C -0.18 -2.18 10.18 30.60 0.31 -1.87 16
25 C -0.18 -2.23 10.25 30.60 0.31 -1.91 16
26 C 0.12 2.89 5.69 86.85 0.49 3.38 16
27 C -0.26 -12.92 9.70 22.85 0.22 -12.70 16
28 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16
29 H 0.11 6.06 6.17 -2.91 -0.02 6.05 16
30 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16
31 H 0.10 5.02 6.48 -2.91 -0.02 5.01 16
32 H 0.41 12.44 7.80 -92.71 -0.72 11.72 16
33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
34 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16
35 H 0.09 0.75 8.04 -2.39 -0.02 0.74 16
36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16
37 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16
38 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16
39 H 0.09 1.56 7.17 -2.39 -0.02 1.54 16
40 H 0.11 1.00 8.03 -2.39 -0.02 0.98 16
41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.05 1.45 7.61 -2.38 -0.02 1.43 16
45 H 0.07 1.51 8.00 -2.39 -0.02 1.49 16
46 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16
Total: -1.00 -72.15 373.03 3.03 -69.12
By element:
Atomic # 1 Polarization: 37.69 SS G_CDS: 0.25 Total: 37.94 kcal
Atomic # 6 Polarization: -30.00 SS G_CDS: 5.00 Total: -25.00 kcal
Atomic # 7 Polarization: -87.87 SS G_CDS: -4.20 Total: -92.07 kcal
Atomic # 8 Polarization: -30.40 SS G_CDS: -0.06 Total: -30.46 kcal
Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal
Total: -72.15 3.03 -69.12 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582404103.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.393 kcal
(2) G-P(sol) polarization free energy of solvation -72.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds