Wall clock time and date at job start Tue Mar 31 2020 11:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38941 * 119.69608 * 2 1 4 4 C 1.37667 * 120.64904 * 180.02562 * 3 2 1 5 5 C 1.39221 * 119.81355 * 0.02562 * 4 3 2 6 6 N 1.37484 * 133.18397 * 179.97438 * 5 4 3 7 7 H 0.97004 * 125.60374 * 0.04117 * 6 5 4 8 8 C 1.38137 * 108.79162 * 180.02562 * 6 5 4 9 9 C 1.47064 * 125.43432 * 180.26670 * 8 6 5 10 10 O 1.21643 * 120.00197 * 179.69232 * 9 8 6 11 11 N 1.34777 * 119.99374 * 359.68944 * 9 8 6 12 12 C 1.46501 * 119.99851 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47546 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46725 * 300.00073 * 13 12 11 15 15 C 1.53005 * 109.47007 * 59.99659 * 13 12 11 16 16 C 1.52992 * 109.47511 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.47427 * 180.02562 * 16 13 12 18 18 H 1.08002 * 119.99570 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00319 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46991 * 60.00365 * 21 19 17 23 23 H 1.48501 * 109.46911 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47071 * 300.00055 * 21 19 17 25 25 C 1.35875 * 109.13947 * 359.97438 * 8 6 5 26 26 C 1.40850 * 119.43041 * 0.02562 * 5 4 3 27 27 C 1.36447 * 119.69180 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47559 * 89.99936 * 1 2 3 29 29 H 1.09004 * 109.47523 * 209.99562 * 1 2 3 30 30 H 1.09003 * 109.47218 * 329.99795 * 1 2 3 31 31 H 1.07994 * 119.67273 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.09482 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00457 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47102 * 300.00523 * 12 11 9 35 35 H 1.09004 * 109.47100 * 59.99694 * 12 11 9 36 36 H 1.09003 * 109.47494 * 60.00157 * 14 13 12 37 37 H 1.09006 * 109.47533 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.47579 * 299.99600 * 14 13 12 39 39 H 1.09003 * 109.46779 * 60.00366 * 15 13 12 40 40 H 1.08994 * 109.46941 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47095 * 300.00666 * 15 13 12 42 42 H 1.09011 * 109.46851 * 299.99803 * 16 13 12 43 43 H 1.09004 * 109.47231 * 59.99274 * 16 13 12 44 44 H 0.96997 * 120.00068 * 180.02562 * 20 19 17 45 45 H 1.08003 * 126.13680 * 179.97438 * 25 8 6 46 46 H 1.08001 * 120.08064 * 359.94317 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2069 0.0000 4 6 3.5717 1.2298 -0.0005 5 6 4.2839 0.0336 -0.0016 6 7 5.6266 -0.2621 -0.0028 7 1 6.3477 0.3867 -0.0025 8 6 5.7799 -1.6349 -0.0041 9 6 7.0654 -2.3492 0.0000 10 8 7.0854 -3.5655 0.0040 11 7 8.2213 -1.6562 -0.0008 12 6 9.5020 -2.3677 0.0027 13 6 10.6484 -1.3545 0.0015 14 6 10.5545 -0.4796 -1.2501 15 6 10.5513 -0.4731 1.2484 16 6 11.9858 -2.0976 0.0045 17 6 13.1150 -1.0996 0.0041 18 1 12.9002 -0.0412 0.0014 19 6 14.4223 -1.5377 0.0070 20 7 14.6838 -2.8266 0.0097 21 14 15.8220 -0.3006 0.0057 22 1 15.7276 0.5548 1.2159 23 1 17.1200 -1.0219 0.0100 24 1 15.7309 0.5486 -1.2091 25 6 4.5537 -2.2202 -0.0032 26 6 3.5838 -1.1887 -0.0027 27 6 2.1828 -1.1853 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6450 2.1362 0.0004 32 1 4.0977 2.1732 -0.0009 33 1 8.2054 -0.6863 -0.0037 34 1 9.5690 -2.9908 0.8945 35 1 9.5710 -2.9960 -0.8854 36 1 9.6017 0.0498 -1.2527 37 1 11.3710 0.2426 -1.2508 38 1 10.6237 -1.1075 -2.1384 39 1 10.6181 -1.0964 2.1401 40 1 11.3677 0.2490 1.2474 41 1 9.5984 0.0563 1.2458 42 1 12.0529 -2.7212 0.8961 43 1 12.0547 -2.7253 -0.8839 44 1 15.6035 -3.1348 0.0121 45 1 4.3546 -3.2817 -0.0042 46 1 1.6391 -2.1185 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588783902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:11 Heat of formation + Delta-G solvation = -4.555460 kcal Electronic energy + Delta-G solvation = -25121.719014 eV Core-core repulsion = 21589.631895 eV Total energy + Delta-G solvation = -3532.087119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77706 -39.52359 -37.59190 -37.06053 -33.81561 -32.52067 -32.24293 -31.54553 -29.26433 -27.40424 -26.96878 -26.61970 -26.05842 -23.94437 -22.67704 -21.94002 -20.87000 -20.12850 -19.01262 -17.92996 -17.21809 -16.41350 -15.67673 -15.51296 -15.38874 -15.00707 -14.59924 -14.55867 -14.22860 -14.00524 -13.79320 -13.59578 -13.43751 -13.22261 -13.06078 -12.85103 -12.42039 -12.26255 -12.11246 -11.89820 -11.39716 -11.24303 -11.14976 -11.07258 -10.92771 -10.70648 -10.50230 -10.34096 -10.18553 -10.11374 -9.96723 -9.27301 -9.00590 -8.95920 -8.40360 -8.34280 -7.97987 -6.04361 -4.06224 0.57469 1.33595 1.97300 2.68738 3.18387 3.28507 3.31277 3.34395 3.35349 3.61674 4.38996 4.40893 4.61333 4.66500 4.81226 4.95725 5.09696 5.15532 5.30727 5.34518 5.35218 5.41178 5.47584 5.51943 5.62003 5.63441 5.78441 5.81858 6.04002 6.08254 6.11905 6.17820 6.27938 6.29881 6.39345 6.42853 6.46979 6.52947 6.62321 6.82955 6.95430 6.98065 7.02798 7.12588 7.52700 7.58132 7.69481 7.93360 8.15836 8.34869 8.98022 9.57051 11.06920 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033145 B = 0.002273 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.569035 B =12317.887609 C =12960.790106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.578 5.578 7 H 0.418 0.582 8 C 0.025 3.975 9 C 0.575 3.425 10 O -0.524 6.524 11 N -0.717 5.717 12 C 0.127 3.873 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.037 3.963 17 C -0.514 4.514 18 H 0.058 0.942 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.113 4.113 26 C -0.114 4.114 27 C -0.062 4.062 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.393 0.607 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.156 0.844 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.519 8.430 -0.047 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.149 4.149 5 C -0.003 4.003 6 N -0.182 5.182 7 H 0.256 0.744 8 C -0.084 4.084 9 C 0.360 3.640 10 O -0.400 6.400 11 N -0.368 5.368 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.552 4.552 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.140 4.140 26 C -0.119 4.119 27 C -0.081 4.081 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.228 0.772 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.173 0.827 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.143 7.443 -0.043 26.222 hybrid contribution 1.364 1.468 -0.008 2.004 sum -23.779 8.912 -0.051 25.394 Atomic orbital electron populations 1.20721 0.91133 1.02570 1.02098 1.19370 0.96061 0.92808 1.03781 1.20741 0.92829 0.97624 0.99639 1.20058 0.93844 0.94882 1.06082 1.18327 0.82961 0.95585 1.03410 1.41970 1.06157 1.06133 1.63988 0.74436 1.20343 0.95504 0.82094 1.10491 1.17232 0.82217 0.86995 0.77536 1.90852 1.86719 1.12407 1.50047 1.46134 1.06386 1.10108 1.74150 1.21734 0.80355 0.95115 1.02311 1.20927 0.96228 0.95128 0.95063 1.21774 0.99502 0.99803 0.97392 1.21772 0.99499 0.99772 0.97422 1.19085 0.88211 0.95168 0.97610 1.21120 0.90538 0.92842 1.50693 0.92343 1.25018 0.98943 0.95046 0.95485 1.69949 1.19662 1.13084 1.50532 0.86696 0.81665 0.81342 0.78500 1.20337 1.21359 1.20330 1.20900 0.89220 0.99381 1.04514 1.18186 0.93584 0.92280 1.07806 1.20257 0.91442 0.97877 0.98524 0.91503 0.91709 0.91780 0.85649 0.85936 0.77184 0.91311 0.91306 0.95594 0.91254 0.93166 0.93167 0.91251 0.95592 0.96242 0.96237 0.92919 0.82660 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.99 36.00 0.36 -0.26 16 2 C -0.12 -1.00 5.84 -105.01 -0.61 -1.61 16 3 C -0.09 -0.71 9.66 -39.53 -0.38 -1.09 16 4 C -0.13 -1.13 10.07 -39.42 -0.40 -1.53 16 5 C 0.11 1.15 7.25 -83.98 -0.61 0.54 16 6 N -0.58 -5.98 6.07 -7.36 -0.04 -6.03 16 7 H 0.42 3.26 8.12 -40.82 -0.33 2.93 16 8 C 0.03 0.33 6.97 -82.29 -0.57 -0.25 16 9 C 0.57 8.75 7.80 -12.68 -0.10 8.65 16 10 O -0.52 -9.82 16.84 5.24 0.09 -9.73 16 11 N -0.72 -10.10 4.95 -61.50 -0.30 -10.40 16 12 C 0.13 2.17 4.56 -4.04 -0.02 2.15 16 13 C -0.07 -1.33 0.54 -154.51 -0.08 -1.42 16 14 C -0.13 -2.14 8.05 37.15 0.30 -1.84 16 15 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 16 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 17 C -0.51 -13.36 7.65 -34.44 -0.26 -13.62 16 18 H 0.06 1.45 5.68 -52.49 -0.30 1.16 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.11 -1.42 10.53 -39.15 -0.41 -1.83 16 26 C -0.11 -1.31 6.16 -106.93 -0.66 -1.97 16 27 C -0.06 -0.60 9.68 -39.53 -0.38 -0.98 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.39 4.56 5.22 -40.82 -0.21 4.35 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 37 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 42 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -31.31 373.98 -9.52 -40.84 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.87 Total: 3.79 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.75 Total: -14.69 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.39 Total: -41.73 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.31 -9.52 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.280 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds