Wall clock time and date at job start Tue Mar 31 2020 11:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38941 * 119.69608 * 2 1 4 4 C 1.37667 * 120.64904 * 180.02562 * 3 2 1 5 5 C 1.39221 * 119.81355 * 0.02562 * 4 3 2 6 6 N 1.37484 * 133.18397 * 179.97438 * 5 4 3 7 7 H 0.97004 * 125.60374 * 0.04117 * 6 5 4 8 8 C 1.38137 * 108.79162 * 180.02562 * 6 5 4 9 9 C 1.47064 * 125.43432 * 180.26670 * 8 6 5 10 10 O 1.21643 * 120.00197 * 179.69232 * 9 8 6 11 11 N 1.34777 * 119.99374 * 359.68944 * 9 8 6 12 12 C 1.46501 * 119.99851 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47546 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46725 * 300.00073 * 13 12 11 15 15 C 1.53005 * 109.47007 * 59.99659 * 13 12 11 16 16 C 1.52992 * 109.47511 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.47427 * 180.02562 * 16 13 12 18 18 H 1.08002 * 119.99570 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00319 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00101 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46991 * 60.00365 * 21 19 17 23 23 H 1.48501 * 109.46911 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47071 * 300.00055 * 21 19 17 25 25 C 1.35875 * 109.13947 * 359.97438 * 8 6 5 26 26 C 1.40850 * 119.43041 * 0.02562 * 5 4 3 27 27 C 1.36447 * 119.69180 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47559 * 89.99936 * 1 2 3 29 29 H 1.09004 * 109.47523 * 209.99562 * 1 2 3 30 30 H 1.09003 * 109.47218 * 329.99795 * 1 2 3 31 31 H 1.07994 * 119.67273 * 0.02562 * 3 2 1 32 32 H 1.08007 * 120.09482 * 179.97438 * 4 3 2 33 33 H 0.97000 * 120.00457 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47102 * 300.00523 * 12 11 9 35 35 H 1.09004 * 109.47100 * 59.99694 * 12 11 9 36 36 H 1.09003 * 109.47494 * 60.00157 * 14 13 12 37 37 H 1.09006 * 109.47533 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.47579 * 299.99600 * 14 13 12 39 39 H 1.09003 * 109.46779 * 60.00366 * 15 13 12 40 40 H 1.08994 * 109.46941 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47095 * 300.00666 * 15 13 12 42 42 H 1.09011 * 109.46851 * 299.99803 * 16 13 12 43 43 H 1.09004 * 109.47231 * 59.99274 * 16 13 12 44 44 H 0.96997 * 120.00068 * 180.02562 * 20 19 17 45 45 H 1.08003 * 126.13680 * 179.97438 * 25 8 6 46 46 H 1.08001 * 120.08064 * 359.94317 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1952 1.2069 0.0000 4 6 3.5717 1.2298 -0.0005 5 6 4.2839 0.0336 -0.0016 6 7 5.6266 -0.2621 -0.0028 7 1 6.3477 0.3867 -0.0025 8 6 5.7799 -1.6349 -0.0041 9 6 7.0654 -2.3492 0.0000 10 8 7.0854 -3.5655 0.0040 11 7 8.2213 -1.6562 -0.0008 12 6 9.5020 -2.3677 0.0027 13 6 10.6484 -1.3545 0.0015 14 6 10.5545 -0.4796 -1.2501 15 6 10.5513 -0.4731 1.2484 16 6 11.9858 -2.0976 0.0045 17 6 13.1150 -1.0996 0.0041 18 1 12.9002 -0.0412 0.0014 19 6 14.4223 -1.5377 0.0070 20 7 14.6838 -2.8266 0.0097 21 14 15.8220 -0.3006 0.0057 22 1 15.7276 0.5548 1.2159 23 1 17.1200 -1.0219 0.0100 24 1 15.7309 0.5486 -1.2091 25 6 4.5537 -2.2202 -0.0032 26 6 3.5838 -1.1887 -0.0027 27 6 2.1828 -1.1853 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6450 2.1362 0.0004 32 1 4.0977 2.1732 -0.0009 33 1 8.2054 -0.6863 -0.0037 34 1 9.5690 -2.9908 0.8945 35 1 9.5710 -2.9960 -0.8854 36 1 9.6017 0.0498 -1.2527 37 1 11.3710 0.2426 -1.2508 38 1 10.6237 -1.1075 -2.1384 39 1 10.6181 -1.0964 2.1401 40 1 11.3677 0.2490 1.2474 41 1 9.5984 0.0563 1.2458 42 1 12.0529 -2.7212 0.8961 43 1 12.0547 -2.7253 -0.8839 44 1 15.6035 -3.1348 0.0121 45 1 4.3546 -3.2817 -0.0042 46 1 1.6391 -2.1185 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588783902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:11 Heat of formation + Delta-G solvation = -22.516387 kcal Electronic energy + Delta-G solvation = -25122.497858 eV Core-core repulsion = 21589.631895 eV Total energy + Delta-G solvation = -3532.865963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.62092 -40.74385 -38.77157 -38.11657 -35.38419 -34.04690 -33.25405 -32.29893 -30.14835 -29.14406 -28.15189 -28.01236 -27.01099 -25.32348 -24.08993 -22.77032 -21.74143 -21.19555 -20.18505 -19.17828 -18.37917 -18.13852 -16.96288 -16.69938 -16.47276 -16.19926 -15.81512 -15.64418 -15.21321 -14.99944 -14.79770 -14.71900 -14.61440 -14.35602 -14.14382 -13.96290 -13.83920 -13.79160 -12.88316 -12.87082 -12.77624 -12.63551 -12.50744 -12.36263 -12.26021 -12.04000 -12.03352 -11.78848 -11.58355 -11.52076 -11.00121 -10.90748 -10.89080 -10.51540 -10.27853 -9.11107 -8.74403 -8.14733 -6.22721 -0.26472 0.63633 1.06194 1.42122 1.43949 1.51198 1.81301 2.03653 2.22124 2.43801 2.90522 3.19614 3.60167 3.73773 3.90672 4.03020 4.08641 4.09404 4.16423 4.31756 4.39123 4.49931 4.61686 4.66086 4.69316 4.75265 4.84431 4.89790 4.95401 4.98216 5.01627 5.08101 5.14259 5.23610 5.27000 5.39363 5.44944 5.47685 5.49117 5.53558 5.54980 5.64982 5.77080 5.79065 5.88272 6.12295 6.27554 6.33652 6.48502 6.92078 6.97742 7.44968 8.97390 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033145 B = 0.002273 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.569035 B =12317.887609 C =12960.790106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.133 4.133 5 C 0.100 3.900 6 N -0.566 5.566 7 H 0.430 0.570 8 C 0.009 3.991 9 C 0.579 3.421 10 O -0.567 6.567 11 N -0.702 5.702 12 C 0.140 3.860 13 C -0.064 4.064 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.040 3.960 17 C -0.515 4.515 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.959 3.041 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.267 1.267 25 C -0.120 4.120 26 C -0.138 4.138 27 C -0.077 4.077 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.067 0.933 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.259 0.741 45 H 0.151 0.849 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.792 12.186 -0.048 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.154 4.154 5 C -0.010 4.010 6 N -0.172 5.172 7 H 0.270 0.730 8 C -0.101 4.101 9 C 0.366 3.634 10 O -0.447 6.447 11 N -0.354 5.354 12 C 0.016 3.984 13 C -0.065 4.065 14 C -0.180 4.180 15 C -0.180 4.180 16 C 0.002 3.998 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.784 3.216 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.147 4.147 26 C -0.143 4.143 27 C -0.096 4.096 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.247 0.753 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.068 0.932 45 H 0.169 0.831 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.425 11.266 -0.044 29.649 hybrid contribution 1.892 0.307 -0.008 1.917 sum -25.533 11.574 -0.052 28.034 Atomic orbital electron populations 1.20777 0.89213 1.03563 1.02904 1.19756 0.97559 0.92512 1.02264 1.21184 0.92805 0.98671 0.97742 1.20406 0.94295 0.95073 1.05603 1.18626 0.82902 0.96141 1.03380 1.41812 1.06645 1.05172 1.63597 0.73009 1.19852 0.94039 0.83310 1.12862 1.17493 0.82978 0.86546 0.76368 1.90828 1.87378 1.14397 1.52051 1.45833 1.05023 1.10674 1.73856 1.21344 0.81469 0.94687 1.00894 1.20716 0.93366 0.95248 0.97143 1.21716 1.01406 0.99180 0.95747 1.21715 1.01403 0.99143 0.95782 1.18965 0.91575 0.94709 0.94517 1.21551 0.90976 0.93796 1.48933 0.90870 1.25961 1.02055 0.96792 0.95504 1.70113 1.20001 1.15313 1.52408 0.85589 0.77933 0.78904 0.79139 1.19157 1.21813 1.19148 1.21044 0.89834 0.99722 1.04131 1.18382 0.94449 0.92307 1.09136 1.20492 0.90920 0.99147 0.99049 0.90681 0.91284 0.90320 0.82744 0.83493 0.75342 0.92903 0.92894 0.91377 0.92295 0.94288 0.94289 0.92292 0.91373 0.99447 0.99437 0.93183 0.83105 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.99 71.23 0.71 -0.19 16 2 C -0.12 -1.68 5.84 -20.12 -0.12 -1.79 16 3 C -0.08 -1.05 9.66 22.30 0.22 -0.83 16 4 C -0.13 -1.90 10.07 22.37 0.23 -1.68 16 5 C 0.10 1.94 7.25 39.13 0.28 2.22 16 6 N -0.57 -10.63 6.07 -177.19 -1.08 -11.71 16 7 H 0.43 5.45 8.12 -92.71 -0.75 4.70 16 8 C 0.01 0.23 6.97 39.92 0.28 0.51 16 9 C 0.58 17.67 7.80 86.56 0.68 18.35 16 10 O -0.57 -22.07 16.84 -4.17 -0.07 -22.14 16 11 N -0.70 -19.17 4.95 -466.71 -2.31 -21.48 16 12 C 0.14 4.87 4.56 86.38 0.39 5.26 16 13 C -0.06 -2.34 0.54 -52.18 -0.03 -2.37 16 14 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 15 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 16 C 0.04 1.99 4.04 29.85 0.12 2.11 16 17 C -0.51 -27.07 7.65 25.60 0.20 -26.88 16 18 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 20 N -0.94 -56.57 13.29 21.45 0.28 -56.29 16 21 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C -0.12 -3.03 10.53 22.55 0.24 -2.79 16 26 C -0.14 -3.06 6.16 -21.36 -0.13 -3.19 16 27 C -0.08 -1.38 9.68 22.30 0.22 -1.16 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.53 8.07 -2.39 -0.02 0.51 16 30 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 31 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.41 8.40 5.22 -92.71 -0.48 7.92 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 37 H 0.06 2.03 6.62 -2.38 -0.02 2.01 16 38 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 2.03 6.62 -2.39 -0.02 2.01 16 41 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 42 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 43 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -70.97 373.98 3.51 -67.46 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.24 Total: 18.13 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.90 Total: -19.07 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.10 Total: -89.48 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.07 Total: -22.14 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.97 3.51 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588783902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.943 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds