Wall clock time and date at job start Tue Mar 31 2020 11:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99851 * 2 1 4 4 C 1.53001 * 109.47016 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47147 * 65.66519 * 4 3 2 6 6 C 1.46896 * 110.99724 * 52.50241 * 5 4 3 7 7 C 1.50702 * 109.47275 * 66.04735 * 6 5 4 8 8 H 1.08000 * 119.99837 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00407 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99635 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00483 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47087 * 59.99956 * 11 9 7 13 13 H 1.48502 * 109.47411 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46923 * 299.99967 * 11 9 7 15 15 C 1.46895 * 110.99928 * 288.54995 * 5 4 3 16 16 C 1.50702 * 109.47109 * 285.29937 * 15 5 4 17 17 C 1.39338 * 120.02863 * 272.48948 * 16 15 5 18 18 N 1.31080 * 121.74151 * 179.97438 * 17 16 15 19 19 C 1.33685 * 121.32793 * 359.72211 * 18 17 16 20 20 C 1.40599 * 121.07226 * 179.72001 * 19 18 17 21 21 C 1.36071 * 119.74417 * 180.32497 * 20 19 18 22 22 C 1.39355 * 121.06824 * 0.25497 * 21 20 19 23 23 C 1.50700 * 119.56252 * 180.02562 * 22 21 20 24 24 C 1.36130 * 120.87255 * 0.02562 * 22 21 20 25 25 C 1.40434 * 119.61459 * 0.02562 * 24 22 21 26 26 C 1.36576 * 120.03517 * 92.46751 * 16 15 5 27 27 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47130 * 300.00102 * 1 2 3 29 29 H 1.09001 * 109.46810 * 60.00600 * 1 2 3 30 30 H 1.09006 * 109.47012 * 59.99653 * 3 2 1 31 31 H 1.08994 * 109.46844 * 299.99736 * 3 2 1 32 32 H 1.09000 * 109.46950 * 305.66403 * 4 3 2 33 33 H 1.09005 * 109.46765 * 185.66837 * 4 3 2 34 34 H 1.08996 * 109.47126 * 186.04338 * 6 5 4 35 35 H 1.09001 * 109.47443 * 306.04566 * 6 5 4 36 36 H 0.97003 * 119.99744 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47259 * 165.29710 * 15 5 4 38 38 H 1.08998 * 109.47150 * 45.29504 * 15 5 4 39 39 H 1.07995 * 119.12910 * 359.97438 * 17 16 15 40 40 H 1.07997 * 120.11979 * 0.60025 * 20 19 18 41 41 H 1.08001 * 119.46440 * 180.27477 * 21 20 19 42 42 H 1.08998 * 109.47209 * 89.99820 * 23 22 21 43 43 H 1.08997 * 109.47410 * 209.99901 * 23 22 21 44 44 H 1.09003 * 109.47509 * 330.00220 * 23 22 21 45 45 H 1.08003 * 120.19540 * 180.02562 * 24 22 21 46 46 H 1.08002 * 120.92505 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9791 0.5768 -1.2610 6 6 3.4229 1.2950 -2.4154 7 6 3.9986 2.6869 -2.4661 8 1 4.7065 3.0061 -1.7155 9 6 3.6216 3.5527 -3.4707 10 7 2.7599 3.1638 -4.3850 11 14 4.3357 5.2777 -3.5340 12 1 5.8128 5.1975 -3.6651 13 1 3.7743 6.0034 -4.7016 14 1 3.9882 6.0033 -2.2858 15 6 3.6296 -0.8491 -1.3099 16 6 4.5582 -1.6250 -0.4116 17 6 5.7740 -2.0946 -0.9044 18 7 6.6071 -2.7724 -0.1528 19 6 6.3286 -3.0396 1.1271 20 6 7.2235 -3.7721 1.9268 21 6 6.9098 -4.0344 3.2246 22 6 5.7093 -3.5928 3.7776 23 6 5.3965 -3.9019 5.2191 24 6 4.8154 -2.8859 3.0331 25 6 5.1056 -2.5977 1.6896 26 6 4.2091 -1.8681 0.8862 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8500 0.5588 0.8358 33 1 3.9783 2.1755 0.1022 34 1 3.6781 0.7628 -3.3318 35 1 2.3387 1.3536 -2.3191 36 1 2.4944 3.7731 -5.0916 37 1 3.7263 -1.2121 -2.3330 38 1 2.6018 -0.9830 -0.9725 39 1 6.0368 -1.8950 -1.9326 40 1 8.1583 -4.1213 1.5137 41 1 7.6025 -4.5936 3.8360 42 1 5.7754 -3.1003 5.8531 43 1 4.3174 -3.9868 5.3466 44 1 5.8707 -4.8423 5.5002 45 1 3.8885 -2.5487 3.4729 46 1 3.2711 -1.5109 1.2849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:40 Heat of formation + Delta-G solvation = -4.168022 kcal Electronic energy + Delta-G solvation = -26137.564912 eV Core-core repulsion = 22605.494593 eV Total energy + Delta-G solvation = -3532.070318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.82463 -39.91119 -38.45487 -37.30700 -34.99700 -34.21893 -32.94912 -31.95475 -30.49150 -28.88739 -27.93556 -27.37235 -26.00113 -24.84981 -24.16158 -23.07399 -22.86206 -21.19723 -18.91439 -18.36472 -17.94103 -17.46879 -17.37678 -17.16127 -16.64679 -15.97060 -15.79211 -15.51000 -15.37618 -15.17407 -14.96219 -14.71197 -14.37297 -14.12586 -13.93689 -13.75390 -13.35712 -13.13666 -13.07438 -12.99685 -12.85512 -12.77943 -12.50631 -12.44767 -12.32782 -12.12267 -12.08238 -11.84303 -11.69632 -11.35810 -11.22724 -10.62500 -10.47610 -10.35664 -9.49457 -9.07421 -8.79423 -8.16594 -6.25844 -0.49726 -0.09699 1.09057 1.41634 1.44269 1.51662 1.98066 2.42018 2.81609 3.13967 3.16084 3.39158 3.55807 3.72084 3.85720 3.89474 4.04515 4.09685 4.22667 4.29448 4.32120 4.40847 4.43023 4.46858 4.54807 4.57221 4.72841 4.76787 4.79797 4.83160 4.88837 4.91695 5.04473 5.08761 5.11622 5.20059 5.26470 5.32112 5.34886 5.40925 5.51347 5.64127 5.69674 5.70525 6.00033 6.10030 6.20458 6.41573 6.67008 6.90536 6.97824 7.43523 8.93193 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.003418 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.669449 B = 8190.481553 C = 8977.439034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.031 3.969 4 C 0.071 3.929 5 N -0.535 5.535 6 C 0.208 3.792 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.080 3.920 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.500 5.500 19 C 0.090 3.910 20 C -0.109 4.109 21 C -0.094 4.094 22 C -0.087 4.087 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.051 4.051 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.026 0.974 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.078 0.922 34 H -0.003 1.003 35 H -0.015 1.015 36 H 0.263 0.737 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 -13.387 18.906 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C -0.047 4.047 4 C -0.058 4.058 5 N -0.258 5.258 6 C 0.082 3.918 7 C -0.557 4.557 8 H 0.078 0.922 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.047 4.047 16 C -0.119 4.119 17 C -0.035 4.035 18 N -0.208 5.208 19 C -0.032 4.032 20 C -0.127 4.127 21 C -0.114 4.114 22 C -0.087 4.087 23 C -0.168 4.168 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.078 4.078 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.015 0.985 35 H 0.002 0.998 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.174 0.826 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.164 0.836 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.712 -13.809 18.454 23.112 hybrid contribution -1.600 1.680 -0.781 2.448 sum 0.112 -12.129 17.673 21.435 Atomic orbital electron populations 1.22888 0.80740 1.03545 1.00084 1.87794 1.20608 1.27829 1.95130 1.23252 0.96022 0.85005 1.00420 1.22131 0.90657 1.00412 0.92565 1.62126 1.59539 1.01157 1.02933 1.19437 0.92395 0.92582 0.87345 1.21417 1.25140 0.97882 1.11260 0.92217 1.25789 0.95532 1.02700 0.95165 1.70073 1.34232 1.37597 1.15375 0.85565 0.78687 0.79427 0.77715 1.19829 1.21073 1.19124 1.21350 0.97815 0.87916 0.97629 1.20559 0.96650 0.98842 0.95869 1.22957 0.89399 0.91283 0.99893 1.68041 1.32778 1.14432 1.05572 1.19347 0.94073 0.98826 0.90940 1.20970 0.99272 0.98312 0.94188 1.21143 0.96937 0.98986 0.94314 1.20065 0.93887 0.96759 0.98032 1.20881 1.03146 1.03044 0.89729 1.21092 1.00899 0.99059 0.91484 1.19041 0.95297 1.00328 0.96419 1.21555 0.99223 0.94495 0.92487 0.88033 0.92707 0.95476 0.91872 0.94289 0.90320 0.90421 0.98469 0.99757 0.92840 0.92088 0.89480 0.82647 0.84331 0.82364 0.90066 0.90567 0.89857 0.83606 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.39 -12.38 7.39 -148.98 -1.10 -13.48 16 3 C 0.03 1.07 5.64 71.98 0.41 1.48 16 4 C 0.07 2.65 5.53 86.30 0.48 3.12 16 5 N -0.53 -22.83 4.63 -905.38 -4.19 -27.02 16 6 C 0.21 10.77 4.31 85.56 0.37 11.14 16 7 C -0.52 -28.70 8.61 25.60 0.22 -28.48 16 8 H 0.06 3.26 7.10 -2.91 -0.02 3.24 16 9 C 0.01 0.35 5.46 84.65 0.46 0.81 16 10 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 11 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.08 2.98 5.00 85.56 0.43 3.41 16 16 C -0.12 -3.91 5.07 -19.99 -0.10 -4.01 16 17 C 0.14 4.73 10.83 85.07 0.92 5.65 16 18 N -0.50 -17.28 10.34 -188.63 -1.95 -19.23 16 19 C 0.09 2.76 6.60 40.29 0.27 3.03 16 20 C -0.11 -2.65 9.98 22.34 0.22 -2.43 16 21 C -0.09 -1.71 9.58 22.03 0.21 -1.50 16 22 C -0.09 -1.55 5.84 -20.09 -0.12 -1.66 16 23 C -0.11 -1.14 9.98 71.24 0.71 -0.43 16 24 C -0.11 -2.29 9.38 22.31 0.21 -2.08 16 25 C -0.11 -3.08 5.74 -21.28 -0.12 -3.20 16 26 C -0.05 -1.51 8.08 22.50 0.18 -1.33 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.04 1.66 5.86 -2.39 -0.01 1.65 16 32 H 0.08 2.63 5.93 -2.39 -0.01 2.62 16 33 H 0.08 3.09 7.09 -2.38 -0.02 3.07 16 34 H 0.00 -0.16 7.84 -2.39 -0.02 -0.18 16 35 H -0.02 -0.82 5.72 -2.39 -0.01 -0.84 16 36 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 38 H 0.09 3.16 4.50 -2.46 -0.01 3.15 16 39 H 0.16 5.19 8.06 -2.91 -0.02 5.17 16 40 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.67 8.07 -2.39 -0.02 0.65 16 44 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 45 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.15 4.00 7.74 -2.91 -0.02 3.97 16 Total: -1.00 -66.97 370.06 2.03 -64.93 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.97 Total: 18.42 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.99 Total: -14.66 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -5.86 Total: -101.16 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.10 Total: -13.48 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.97 2.03 -64.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.767 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds