Wall clock time and date at job start Tue Mar 31 2020 10:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99752 * 2 1 4 4 H 1.48497 * 109.47383 * 274.97210 * 3 2 1 5 5 H 1.48505 * 109.47384 * 34.97412 * 3 2 1 6 6 H 1.48500 * 109.46982 * 154.96919 * 3 2 1 7 7 C 1.39929 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99995 * 195.62210 * 7 2 1 9 9 C 1.41406 * 119.99916 * 15.62026 * 7 2 1 10 10 C 1.40772 * 120.21433 * 29.18711 * 9 7 2 11 11 C 1.37637 * 119.89120 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31784 * 0.25296 * 11 10 9 13 13 C 1.39250 * 120.42863 * 359.49231 * 12 11 10 14 14 N 1.39958 * 119.95006 * 180.23559 * 13 12 11 15 15 C 1.34778 * 119.99940 * 33.28360 * 14 13 12 16 16 O 1.21583 * 120.00029 * 5.15086 * 15 14 13 17 17 N 1.34776 * 119.99905 * 185.15330 * 15 14 13 18 18 C 1.47026 * 125.64965 * 359.68979 * 17 15 14 19 19 C 1.54310 * 107.27470 * 180.97257 * 18 17 15 20 20 C 1.55155 * 102.86629 * 22.52268 * 19 18 17 21 21 H 1.09002 * 111.00147 * 82.38020 * 20 19 18 22 22 C 1.53000 * 111.00812 * 206.22631 * 20 19 18 23 23 C 1.53774 * 113.61879 * 272.79049 * 22 20 19 24 24 C 1.53948 * 87.02065 * 220.04522 * 23 22 20 25 25 C 1.53777 * 113.61487 * 175.17892 * 22 20 19 26 26 C 1.47423 * 125.64729 * 180.02562 * 17 15 14 27 27 C 1.38272 * 120.10528 * 0.50620 * 13 12 11 28 28 H 0.96992 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.05362 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.84305 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78770 * 179.74295 * 12 11 10 32 32 H 0.97001 * 119.99922 * 213.29011 * 14 13 12 33 33 H 1.08998 * 109.87774 * 300.51768 * 18 17 15 34 34 H 1.09001 * 109.87982 * 61.67743 * 18 17 15 35 35 H 1.09005 * 110.92370 * 264.10964 * 19 18 17 36 36 H 1.08998 * 110.74218 * 140.85599 * 19 18 17 37 37 H 1.09003 * 112.84500 * 43.99008 * 22 20 19 38 38 H 1.09000 * 113.61186 * 334.56525 * 23 22 20 39 39 H 1.09004 * 113.61397 * 105.46673 * 23 22 20 40 40 H 1.09000 * 113.54363 * 270.80980 * 24 23 22 41 41 H 1.09001 * 113.74651 * 139.94269 * 24 23 22 42 42 H 1.09001 * 113.61544 * 254.53388 * 25 22 20 43 43 H 1.09005 * 113.61530 * 25.43777 * 25 22 20 44 44 H 1.09006 * 110.36650 * 274.67117 * 26 17 15 45 45 H 1.09004 * 110.37009 * 36.99172 * 26 17 15 46 46 H 1.07998 * 120.16110 * 179.72727 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4962 2.6201 0.8025 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2118 0.0005 8 1 3.0581 -1.2290 0.2524 9 6 1.3402 -2.4140 -0.3287 10 6 0.2411 -2.3958 -1.2082 11 6 -0.4037 -3.5699 -1.5244 12 6 0.0202 -4.7699 -0.9772 13 6 1.1091 -4.8040 -0.1099 14 7 1.5319 -6.0225 0.4333 15 6 1.4186 -7.1566 -0.2862 16 8 1.0372 -7.1091 -1.4397 17 7 1.7281 -8.3431 0.2729 18 6 2.2054 -8.5435 1.6491 19 6 2.4511 -10.0557 1.8333 20 6 2.6470 -10.5538 0.3770 21 1 3.6695 -10.3833 0.0401 22 6 2.2683 -12.0305 0.2467 23 6 3.4243 -12.9934 0.5646 24 6 2.9321 -13.8469 -0.6184 25 6 2.3277 -12.5566 -1.1970 26 6 1.6509 -9.6545 -0.3962 27 6 1.7698 -3.6350 0.2199 28 1 -0.4849 0.8400 -0.0004 29 1 -0.0950 -1.4623 -1.6347 30 1 -1.2470 -3.5551 -2.1989 31 1 -0.4947 -5.6856 -1.2281 32 1 1.9064 -6.0510 1.3276 33 1 3.1338 -7.9936 1.8031 34 1 1.4491 -8.2037 2.3568 35 1 1.5878 -10.5372 2.2927 36 1 3.3493 -10.2316 2.4252 37 1 1.3404 -12.2765 0.7632 38 1 4.4110 -12.5577 0.4079 39 1 3.3274 -13.4879 1.5311 40 1 2.1865 -14.5908 -0.3380 41 1 3.7370 -14.2622 -1.2248 42 1 1.3469 -12.6991 -1.6506 43 1 3.0142 -12.0013 -1.8362 44 1 0.6409 -10.0583 -0.3241 45 1 1.9512 -9.5660 -1.4403 46 1 2.6117 -3.6597 0.8959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591346502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:57 Heat of formation + Delta-G solvation = 7.871156 kcal Electronic energy + Delta-G solvation = -25289.838403 eV Core-core repulsion = 21758.290143 eV Total energy + Delta-G solvation = -3531.548261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44663 -39.32690 -37.64868 -36.58728 -34.34118 -33.07683 -31.64613 -29.76897 -29.40653 -28.05303 -26.00008 -25.27390 -25.10133 -23.21411 -21.26005 -20.95776 -20.65573 -19.79273 -19.34751 -17.96037 -17.42682 -16.41134 -15.87714 -15.51378 -15.11241 -14.93382 -14.80889 -14.32182 -14.12813 -13.75235 -13.36222 -12.99176 -12.91614 -12.83037 -12.78777 -12.61307 -12.23069 -12.16078 -12.04334 -11.62218 -11.33287 -11.29810 -11.10374 -11.01309 -10.81942 -10.58046 -10.54049 -10.42523 -10.33339 -10.14121 -9.68152 -9.49724 -9.19690 -8.90637 -8.52691 -7.38239 -6.79950 -6.68447 -4.32138 2.73327 2.86438 2.94204 3.11312 3.14989 3.26307 3.70083 3.98667 4.00203 4.27560 4.29902 4.34627 4.51710 4.52615 4.72055 4.79084 4.88388 5.07501 5.10245 5.27840 5.41123 5.42729 5.45415 5.50808 5.56888 5.60050 5.66103 5.71613 5.75195 5.82468 5.90403 6.03130 6.21070 6.21851 6.36786 6.61287 6.80524 6.95739 7.00426 7.08866 7.26758 7.42053 7.68133 7.84435 8.07655 8.12018 8.27695 8.44112 8.67176 8.92685 8.97108 9.06949 10.28579 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035136 B = 0.002293 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.714092 B =12207.391429 C =12609.948476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.076 0.924 9 C 0.125 3.875 10 C -0.163 4.163 11 C -0.096 4.096 12 C -0.222 4.222 13 C 0.170 3.830 14 N -0.678 5.678 15 C 0.718 3.282 16 O -0.570 6.570 17 N -0.642 5.642 18 C 0.097 3.903 19 C -0.122 4.122 20 C -0.092 4.092 21 H 0.085 0.915 22 C -0.098 4.098 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.139 4.139 26 C 0.134 3.866 27 C -0.244 4.244 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.395 0.605 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.106 -21.757 4.576 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.094 0.906 9 C 0.122 3.878 10 C -0.183 4.183 11 C -0.115 4.115 12 C -0.243 4.243 13 C 0.078 3.922 14 N -0.324 5.324 15 C 0.420 3.580 16 O -0.446 6.446 17 N -0.382 5.382 18 C -0.027 4.027 19 C -0.160 4.160 20 C -0.112 4.112 21 H 0.103 0.897 22 C -0.117 4.117 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.176 4.176 26 C 0.011 3.989 27 C -0.266 4.266 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.581 -21.498 3.709 22.292 hybrid contribution 0.529 0.798 0.626 1.144 sum 5.110 -20.700 4.335 21.758 Atomic orbital electron populations 1.69825 1.07439 1.28996 1.36341 1.25848 0.94734 1.01063 0.92381 0.86316 0.80494 0.80895 0.79044 1.19443 1.20409 1.18713 1.19472 0.97231 0.90813 1.42413 0.90552 1.17347 0.90920 0.91323 0.88210 1.21273 0.99750 0.96508 1.00755 1.20580 0.98803 0.92821 0.99316 1.20368 1.00044 0.97399 1.06501 1.17251 0.94688 0.82318 0.97976 1.42636 1.65749 1.05497 1.18500 1.15473 0.78857 0.79254 0.84405 1.90936 1.52771 1.85025 1.15854 1.47603 1.71570 1.05410 1.13593 1.21994 0.99297 0.97200 0.84165 1.22637 1.02637 0.93869 0.96867 1.22413 0.99686 0.93765 0.95302 0.89674 1.22484 0.99142 0.92564 0.97502 1.22968 0.98336 0.97431 0.98486 1.22848 1.00630 0.96717 0.97980 1.22949 1.01565 0.96883 0.96232 1.21986 0.98732 0.80907 0.97296 1.20699 1.04720 0.92138 1.09037 0.91034 0.86785 0.89019 0.87902 0.77068 0.91704 0.91604 0.90462 0.90095 0.88963 0.90068 0.91563 0.90341 0.91561 0.91334 0.89891 0.91883 0.90525 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 11.15 55.55 0.62 -20.45 16 2 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 3 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.47 -12.61 9.04 -37.74 -0.34 -12.95 16 8 H 0.08 1.97 7.89 -52.48 -0.41 1.56 16 9 C 0.12 3.40 5.52 -106.85 -0.59 2.81 16 10 C -0.16 -4.39 8.66 -38.84 -0.34 -4.73 16 11 C -0.10 -2.42 10.02 -39.69 -0.40 -2.82 16 12 C -0.22 -5.53 8.66 -39.10 -0.34 -5.87 16 13 C 0.17 4.03 6.27 -83.76 -0.53 3.50 16 14 N -0.68 -13.08 5.29 -14.27 -0.08 -13.16 16 15 C 0.72 13.80 8.23 -86.92 -0.71 13.08 16 16 O -0.57 -13.27 14.26 5.29 0.08 -13.20 16 17 N -0.64 -9.09 3.33 -176.26 -0.59 -9.68 16 18 C 0.10 0.98 6.16 -3.07 -0.02 0.96 16 19 C -0.12 -0.90 6.42 -24.90 -0.16 -1.06 16 20 C -0.09 -0.75 2.79 -88.48 -0.25 -1.00 16 21 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 22 C -0.10 -0.66 3.17 -89.81 -0.28 -0.94 16 23 C -0.13 -0.80 7.65 -25.83 -0.20 -0.99 16 24 C -0.14 -0.87 8.09 -25.83 -0.21 -1.07 16 25 C -0.14 -0.96 7.28 -25.92 -0.19 -1.15 16 26 C 0.13 1.57 6.02 -2.54 -0.02 1.56 16 27 C -0.24 -6.08 9.70 -38.68 -0.38 -6.46 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.11 3.13 6.44 -52.48 -0.34 2.80 16 30 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.10 2.57 6.39 -52.49 -0.34 2.24 16 32 H 0.40 6.28 7.80 -40.82 -0.32 5.96 16 33 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.52 7.96 -51.93 -0.41 0.10 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.08 0.48 7.99 -51.93 -0.42 0.07 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 45 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 46 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -31.54 369.83 -11.71 -43.25 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.26 Total: 8.97 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -5.03 Total: -15.27 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.04 Total: -43.29 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.54 -11.71 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591346502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.123 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds