Wall clock time and date at job start Tue Mar 31 2020 10:56:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30835 * 1
3 3 Si 1.86798 * 119.99752 * 2 1
4 4 H 1.48497 * 109.47383 * 274.97210 * 3 2 1
5 5 H 1.48505 * 109.47384 * 34.97412 * 3 2 1
6 6 H 1.48500 * 109.46982 * 154.96919 * 3 2 1
7 7 C 1.39929 * 120.00097 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99995 * 195.62210 * 7 2 1
9 9 C 1.41406 * 119.99916 * 15.62026 * 7 2 1
10 10 C 1.40772 * 120.21433 * 29.18711 * 9 7 2
11 11 C 1.37637 * 119.89120 * 179.97438 * 10 9 7
12 12 C 1.38533 * 120.31784 * 0.25296 * 11 10 9
13 13 C 1.39250 * 120.42863 * 359.49231 * 12 11 10
14 14 N 1.39958 * 119.95006 * 180.23559 * 13 12 11
15 15 C 1.34778 * 119.99940 * 33.28360 * 14 13 12
16 16 O 1.21583 * 120.00029 * 5.15086 * 15 14 13
17 17 N 1.34776 * 119.99905 * 185.15330 * 15 14 13
18 18 C 1.47026 * 125.64965 * 359.68979 * 17 15 14
19 19 C 1.54310 * 107.27470 * 180.97257 * 18 17 15
20 20 C 1.55155 * 102.86629 * 22.52268 * 19 18 17
21 21 H 1.09002 * 111.00147 * 82.38020 * 20 19 18
22 22 C 1.53000 * 111.00812 * 206.22631 * 20 19 18
23 23 C 1.53774 * 113.61879 * 272.79049 * 22 20 19
24 24 C 1.53948 * 87.02065 * 220.04522 * 23 22 20
25 25 C 1.53777 * 113.61487 * 175.17892 * 22 20 19
26 26 C 1.47423 * 125.64729 * 180.02562 * 17 15 14
27 27 C 1.38272 * 120.10528 * 0.50620 * 13 12 11
28 28 H 0.96992 * 119.99900 * 0.02562 * 1 2 3
29 29 H 1.08003 * 120.05362 * 0.02562 * 10 9 7
30 30 H 1.07994 * 119.84305 * 179.97438 * 11 10 9
31 31 H 1.08002 * 119.78770 * 179.74295 * 12 11 10
32 32 H 0.97001 * 119.99922 * 213.29011 * 14 13 12
33 33 H 1.08998 * 109.87774 * 300.51768 * 18 17 15
34 34 H 1.09001 * 109.87982 * 61.67743 * 18 17 15
35 35 H 1.09005 * 110.92370 * 264.10964 * 19 18 17
36 36 H 1.08998 * 110.74218 * 140.85599 * 19 18 17
37 37 H 1.09003 * 112.84500 * 43.99008 * 22 20 19
38 38 H 1.09000 * 113.61186 * 334.56525 * 23 22 20
39 39 H 1.09004 * 113.61397 * 105.46673 * 23 22 20
40 40 H 1.09000 * 113.54363 * 270.80980 * 24 23 22
41 41 H 1.09001 * 113.74651 * 139.94269 * 24 23 22
42 42 H 1.09001 * 113.61544 * 254.53388 * 25 22 20
43 43 H 1.09005 * 113.61530 * 25.43777 * 25 22 20
44 44 H 1.09006 * 110.36650 * 274.67117 * 26 17 15
45 45 H 1.09004 * 110.37009 * 36.99172 * 26 17 15
46 46 H 1.07998 * 120.16110 * 179.72727 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 2.3847 2.1072 -1.3948
5 1 1.4962 2.6201 0.8025
6 1 3.5884 1.4122 0.5924
7 6 2.0080 -1.2118 0.0005
8 1 3.0581 -1.2290 0.2524
9 6 1.3402 -2.4140 -0.3287
10 6 0.2411 -2.3958 -1.2082
11 6 -0.4037 -3.5699 -1.5244
12 6 0.0202 -4.7699 -0.9772
13 6 1.1091 -4.8040 -0.1099
14 7 1.5319 -6.0225 0.4333
15 6 1.4186 -7.1566 -0.2862
16 8 1.0372 -7.1091 -1.4397
17 7 1.7281 -8.3431 0.2729
18 6 2.2054 -8.5435 1.6491
19 6 2.4511 -10.0557 1.8333
20 6 2.6470 -10.5538 0.3770
21 1 3.6695 -10.3833 0.0401
22 6 2.2683 -12.0305 0.2467
23 6 3.4243 -12.9934 0.5646
24 6 2.9321 -13.8469 -0.6184
25 6 2.3277 -12.5566 -1.1970
26 6 1.6509 -9.6545 -0.3962
27 6 1.7698 -3.6350 0.2199
28 1 -0.4849 0.8400 -0.0004
29 1 -0.0950 -1.4623 -1.6347
30 1 -1.2470 -3.5551 -2.1989
31 1 -0.4947 -5.6856 -1.2281
32 1 1.9064 -6.0510 1.3276
33 1 3.1338 -7.9936 1.8031
34 1 1.4491 -8.2037 2.3568
35 1 1.5878 -10.5372 2.2927
36 1 3.3493 -10.2316 2.4252
37 1 1.3404 -12.2765 0.7632
38 1 4.4110 -12.5577 0.4079
39 1 3.3274 -13.4879 1.5311
40 1 2.1865 -14.5908 -0.3380
41 1 3.7370 -14.2622 -1.2248
42 1 1.3469 -12.6991 -1.6506
43 1 3.0142 -12.0013 -1.8362
44 1 0.6409 -10.0583 -0.3241
45 1 1.9512 -9.5660 -1.4403
46 1 2.6117 -3.6597 0.8959
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000591346502.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:56:56
Heat of formation + Delta-G solvation = -8.436312 kcal
Electronic energy + Delta-G solvation = -25290.545548 eV
Core-core repulsion = 21758.290143 eV
Total energy + Delta-G solvation = -3532.255405 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.69986 -40.29902 -39.15848 -37.83296 -36.13246 -34.90217 -32.73187 -31.76150
-30.28174 -29.74264 -27.17402 -26.60970 -25.99669 -24.19072 -22.93327 -22.71947
-21.53045 -20.86732 -20.31097 -19.49720 -19.05209 -17.50036 -17.34290 -16.83998
-16.55530 -16.31086 -16.14283 -15.89904 -15.13171 -14.86644 -14.65823 -14.54437
-14.14561 -14.06744 -13.98533 -13.54107 -13.36201 -13.20832 -13.17317 -12.89478
-12.80890 -12.75984 -12.50565 -12.33221 -11.95861 -11.90346 -11.65230 -11.55984
-11.35696 -11.27888 -11.08497 -10.97886 -10.87383 -10.77284 -9.72826 -9.39084
-8.68173 -8.60952 -6.36254 0.91907 0.96979 1.40838 1.49143 1.54671
1.57862 2.11132 2.23861 2.77954 2.96961 3.38395 3.61296 3.71423
3.74118 3.91646 4.00411 4.19895 4.22063 4.33893 4.39811 4.40634
4.59058 4.63418 4.66573 4.80537 4.90240 4.93387 4.95136 4.97463
4.99904 5.01779 5.07337 5.11514 5.12974 5.15289 5.20361 5.28561
5.31497 5.38635 5.47957 5.69891 5.73746 5.79897 6.01687 6.08102
6.16256 6.34985 6.66900 6.90140 6.94163 7.00430 7.50135 8.38337
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.035136 B = 0.002293 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 796.714092 B =12207.391429 C =12609.948476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.829 5.829
2 C 0.035 3.965
3 Si 0.985 3.015
4 H -0.265 1.265
5 H -0.268 1.268
6 H -0.257 1.257
7 C -0.499 4.499
8 H 0.079 0.921
9 C 0.099 3.901
10 C -0.189 4.189
11 C -0.097 4.097
12 C -0.236 4.236
13 C 0.181 3.819
14 N -0.670 5.670
15 C 0.711 3.289
16 O -0.618 6.618
17 N -0.635 5.635
18 C 0.086 3.914
19 C -0.111 4.111
20 C -0.080 4.080
21 H 0.084 0.916
22 C -0.094 4.094
23 C -0.128 4.128
24 C -0.142 4.142
25 C -0.148 4.148
26 C 0.127 3.873
27 C -0.254 4.254
28 H 0.288 0.712
29 H 0.100 0.900
30 H 0.110 0.890
31 H 0.100 0.900
32 H 0.413 0.587
33 H 0.075 0.925
34 H 0.074 0.926
35 H 0.090 0.910
36 H 0.106 0.894
37 H 0.100 0.900
38 H 0.082 0.918
39 H 0.078 0.922
40 H 0.085 0.915
41 H 0.067 0.933
42 H 0.063 0.937
43 H 0.073 0.927
44 H 0.066 0.934
45 H 0.055 0.945
46 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.428 -22.922 6.449 24.665
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.456 5.456
2 C -0.180 4.180
3 Si 0.805 3.195
4 H -0.190 1.190
5 H -0.193 1.193
6 H -0.180 1.180
7 C -0.529 4.529
8 H 0.097 0.903
9 C 0.096 3.904
10 C -0.209 4.209
11 C -0.116 4.116
12 C -0.257 4.257
13 C 0.087 3.913
14 N -0.318 5.318
15 C 0.414 3.586
16 O -0.498 6.498
17 N -0.373 5.373
18 C -0.036 4.036
19 C -0.148 4.148
20 C -0.099 4.099
21 H 0.102 0.898
22 C -0.113 4.113
23 C -0.165 4.165
24 C -0.180 4.180
25 C -0.185 4.185
26 C 0.004 3.996
27 C -0.276 4.276
28 H 0.098 0.902
29 H 0.118 0.882
30 H 0.128 0.872
31 H 0.118 0.882
32 H 0.250 0.750
33 H 0.093 0.907
34 H 0.093 0.907
35 H 0.109 0.891
36 H 0.124 0.876
37 H 0.118 0.882
38 H 0.100 0.900
39 H 0.096 0.904
40 H 0.103 0.897
41 H 0.086 0.914
42 H 0.082 0.918
43 H 0.092 0.908
44 H 0.084 0.916
45 H 0.073 0.927
46 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 5.924 -22.738 5.639 24.164
hybrid contribution 0.086 1.028 0.044 1.033
sum 6.010 -21.709 5.683 23.232
Atomic orbital electron populations
1.69883 1.08994 1.30519 1.36162 1.26757 0.95528 1.04474 0.91232
0.85156 0.79149 0.75922 0.79230 1.18990 1.19265 1.18016 1.19746
0.97559 0.91780 1.43794 0.90303 1.17733 0.91429 0.92604 0.88664
1.21209 1.01019 0.96472 1.02174 1.20792 0.99054 0.92496 0.99262
1.20469 1.00866 0.97063 1.07339 1.17252 0.93611 0.83673 0.96761
1.42421 1.65706 1.04385 1.19245 1.15654 0.78742 0.80294 0.83916
1.90896 1.54892 1.85967 1.18026 1.47654 1.69825 1.04398 1.15463
1.22361 0.99879 0.99718 0.81665 1.22660 1.04434 0.91395 0.96321
1.22344 0.98371 0.93877 0.95299 0.89760 1.22484 1.00001 0.91509
0.97280 1.22937 0.97836 0.96811 0.98925 1.22857 1.00768 0.96364
0.97979 1.22988 1.01268 0.97786 0.96484 1.22201 1.00110 0.80462
0.96779 1.20846 1.05335 0.91949 1.09490 0.90186 0.88165 0.87210
0.88175 0.75011 0.90680 0.90735 0.89145 0.87570 0.88208 0.89961
0.90374 0.89651 0.91422 0.91833 0.90786 0.91607 0.92678 0.87181
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -44.25 11.15 21.82 0.24 -44.01 16
2 C 0.03 1.77 5.15 85.25 0.44 2.20 16
3 Si 0.98 38.64 29.59 68.60 2.03 40.67 16
4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16
5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16
6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16
7 C -0.50 -27.23 9.04 23.46 0.21 -27.02 16
8 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16
9 C 0.10 5.51 5.52 -21.31 -0.12 5.39 16
10 C -0.19 -10.51 8.66 22.75 0.20 -10.32 16
11 C -0.10 -5.03 10.02 22.20 0.22 -4.80 16
12 C -0.24 -12.03 8.66 22.58 0.20 -11.83 16
13 C 0.18 8.66 6.27 38.09 0.24 8.90 16
14 N -0.67 -25.61 5.29 -317.33 -1.68 -27.29 16
15 C 0.71 27.39 8.23 179.05 1.47 28.86 16
16 O -0.62 -29.51 14.26 -3.98 -0.06 -29.56 16
17 N -0.64 -17.41 3.33 -829.81 -2.76 -20.17 16
18 C 0.09 1.50 6.16 86.72 0.53 2.04 16
19 C -0.11 -1.23 6.42 31.78 0.20 -1.02 16
20 C -0.08 -1.12 2.79 -9.41 -0.03 -1.15 16
21 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16
22 C -0.09 -1.04 3.17 -10.27 -0.03 -1.08 16
23 C -0.13 -1.15 7.65 31.17 0.24 -0.91 16
24 C -0.14 -1.43 8.09 31.18 0.25 -1.18 16
25 C -0.15 -1.90 7.28 31.12 0.23 -1.67 16
26 C 0.13 2.90 6.02 86.85 0.52 3.42 16
27 C -0.25 -12.82 9.70 22.85 0.22 -12.60 16
28 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16
29 H 0.10 5.74 6.44 -2.91 -0.02 5.73 16
30 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16
31 H 0.10 5.13 6.39 -2.91 -0.02 5.12 16
32 H 0.41 12.59 7.80 -92.71 -0.72 11.87 16
33 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16
34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
35 H 0.09 0.83 7.96 -2.38 -0.02 0.81 16
36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16
37 H 0.10 1.00 8.04 -2.39 -0.02 0.99 16
38 H 0.08 0.75 7.99 -2.39 -0.02 0.73 16
39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16
41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
43 H 0.07 1.07 8.10 -2.38 -0.02 1.06 16
44 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16
45 H 0.05 1.49 8.04 -2.38 -0.02 1.47 16
46 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16
Total: -1.00 -70.29 369.83 3.03 -67.26
By element:
Atomic # 1 Polarization: 35.61 SS G_CDS: 0.25 Total: 35.86 kcal
Atomic # 6 Polarization: -27.77 SS G_CDS: 5.00 Total: -22.77 kcal
Atomic # 7 Polarization: -87.27 SS G_CDS: -4.20 Total: -91.47 kcal
Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.56 kcal
Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal
Total: -70.29 3.03 -67.26 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000591346502.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.825 kcal
(2) G-P(sol) polarization free energy of solvation -70.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds