Wall clock time and date at job start Tue Mar 31 2020 10:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 119.99752 * 2 1 4 4 H 1.48497 * 109.47383 * 274.97210 * 3 2 1 5 5 H 1.48505 * 109.47384 * 34.97412 * 3 2 1 6 6 H 1.48500 * 109.46982 * 154.96919 * 3 2 1 7 7 C 1.39929 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99995 * 195.62210 * 7 2 1 9 9 C 1.41406 * 119.99916 * 15.62026 * 7 2 1 10 10 C 1.40772 * 120.21433 * 29.18711 * 9 7 2 11 11 C 1.37637 * 119.89120 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.31784 * 0.25296 * 11 10 9 13 13 C 1.39250 * 120.42863 * 359.49231 * 12 11 10 14 14 N 1.39958 * 119.95006 * 180.23559 * 13 12 11 15 15 C 1.34778 * 119.99940 * 33.28360 * 14 13 12 16 16 O 1.21583 * 120.00029 * 5.15086 * 15 14 13 17 17 N 1.34776 * 119.99905 * 185.15330 * 15 14 13 18 18 C 1.47026 * 125.64965 * 359.68979 * 17 15 14 19 19 C 1.54310 * 107.27470 * 180.97257 * 18 17 15 20 20 C 1.55155 * 102.86629 * 22.52268 * 19 18 17 21 21 H 1.09002 * 111.00147 * 82.38020 * 20 19 18 22 22 C 1.53000 * 111.00812 * 206.22631 * 20 19 18 23 23 C 1.53774 * 113.61879 * 272.79049 * 22 20 19 24 24 C 1.53948 * 87.02065 * 220.04522 * 23 22 20 25 25 C 1.53777 * 113.61487 * 175.17892 * 22 20 19 26 26 C 1.47423 * 125.64729 * 180.02562 * 17 15 14 27 27 C 1.38272 * 120.10528 * 0.50620 * 13 12 11 28 28 H 0.96992 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.05362 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.84305 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78770 * 179.74295 * 12 11 10 32 32 H 0.97001 * 119.99922 * 213.29011 * 14 13 12 33 33 H 1.08998 * 109.87774 * 300.51768 * 18 17 15 34 34 H 1.09001 * 109.87982 * 61.67743 * 18 17 15 35 35 H 1.09005 * 110.92370 * 264.10964 * 19 18 17 36 36 H 1.08998 * 110.74218 * 140.85599 * 19 18 17 37 37 H 1.09003 * 112.84500 * 43.99008 * 22 20 19 38 38 H 1.09000 * 113.61186 * 334.56525 * 23 22 20 39 39 H 1.09004 * 113.61397 * 105.46673 * 23 22 20 40 40 H 1.09000 * 113.54363 * 270.80980 * 24 23 22 41 41 H 1.09001 * 113.74651 * 139.94269 * 24 23 22 42 42 H 1.09001 * 113.61544 * 254.53388 * 25 22 20 43 43 H 1.09005 * 113.61530 * 25.43777 * 25 22 20 44 44 H 1.09006 * 110.36650 * 274.67117 * 26 17 15 45 45 H 1.09004 * 110.37009 * 36.99172 * 26 17 15 46 46 H 1.07998 * 120.16110 * 179.72727 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3847 2.1072 -1.3948 5 1 1.4962 2.6201 0.8025 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2118 0.0005 8 1 3.0581 -1.2290 0.2524 9 6 1.3402 -2.4140 -0.3287 10 6 0.2411 -2.3958 -1.2082 11 6 -0.4037 -3.5699 -1.5244 12 6 0.0202 -4.7699 -0.9772 13 6 1.1091 -4.8040 -0.1099 14 7 1.5319 -6.0225 0.4333 15 6 1.4186 -7.1566 -0.2862 16 8 1.0372 -7.1091 -1.4397 17 7 1.7281 -8.3431 0.2729 18 6 2.2054 -8.5435 1.6491 19 6 2.4511 -10.0557 1.8333 20 6 2.6470 -10.5538 0.3770 21 1 3.6695 -10.3833 0.0401 22 6 2.2683 -12.0305 0.2467 23 6 3.4243 -12.9934 0.5646 24 6 2.9321 -13.8469 -0.6184 25 6 2.3277 -12.5566 -1.1970 26 6 1.6509 -9.6545 -0.3962 27 6 1.7698 -3.6350 0.2199 28 1 -0.4849 0.8400 -0.0004 29 1 -0.0950 -1.4623 -1.6347 30 1 -1.2470 -3.5551 -2.1989 31 1 -0.4947 -5.6856 -1.2281 32 1 1.9064 -6.0510 1.3276 33 1 3.1338 -7.9936 1.8031 34 1 1.4491 -8.2037 2.3568 35 1 1.5878 -10.5372 2.2927 36 1 3.3493 -10.2316 2.4252 37 1 1.3404 -12.2765 0.7632 38 1 4.4110 -12.5577 0.4079 39 1 3.3274 -13.4879 1.5311 40 1 2.1865 -14.5908 -0.3380 41 1 3.7370 -14.2622 -1.2248 42 1 1.3469 -12.6991 -1.6506 43 1 3.0142 -12.0013 -1.8362 44 1 0.6409 -10.0583 -0.3241 45 1 1.9512 -9.5660 -1.4403 46 1 2.6117 -3.6597 0.8959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591346502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:56 Heat of formation + Delta-G solvation = -8.436312 kcal Electronic energy + Delta-G solvation = -25290.545548 eV Core-core repulsion = 21758.290143 eV Total energy + Delta-G solvation = -3532.255405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69986 -40.29902 -39.15848 -37.83296 -36.13246 -34.90217 -32.73187 -31.76150 -30.28174 -29.74264 -27.17402 -26.60970 -25.99669 -24.19072 -22.93327 -22.71947 -21.53045 -20.86732 -20.31097 -19.49720 -19.05209 -17.50036 -17.34290 -16.83998 -16.55530 -16.31086 -16.14283 -15.89904 -15.13171 -14.86644 -14.65823 -14.54437 -14.14561 -14.06744 -13.98533 -13.54107 -13.36201 -13.20832 -13.17317 -12.89478 -12.80890 -12.75984 -12.50565 -12.33221 -11.95861 -11.90346 -11.65230 -11.55984 -11.35696 -11.27888 -11.08497 -10.97886 -10.87383 -10.77284 -9.72826 -9.39084 -8.68173 -8.60952 -6.36254 0.91907 0.96979 1.40838 1.49143 1.54671 1.57862 2.11132 2.23861 2.77954 2.96961 3.38395 3.61296 3.71423 3.74118 3.91646 4.00411 4.19895 4.22063 4.33893 4.39811 4.40634 4.59058 4.63418 4.66573 4.80537 4.90240 4.93387 4.95136 4.97463 4.99904 5.01779 5.07337 5.11514 5.12974 5.15289 5.20361 5.28561 5.31497 5.38635 5.47957 5.69891 5.73746 5.79897 6.01687 6.08102 6.16256 6.34985 6.66900 6.90140 6.94163 7.00430 7.50135 8.38337 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.035136 B = 0.002293 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.714092 B =12207.391429 C =12609.948476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.189 4.189 11 C -0.097 4.097 12 C -0.236 4.236 13 C 0.181 3.819 14 N -0.670 5.670 15 C 0.711 3.289 16 O -0.618 6.618 17 N -0.635 5.635 18 C 0.086 3.914 19 C -0.111 4.111 20 C -0.080 4.080 21 H 0.084 0.916 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.142 4.142 25 C -0.148 4.148 26 C 0.127 3.873 27 C -0.254 4.254 28 H 0.288 0.712 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -22.922 6.449 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.096 3.904 10 C -0.209 4.209 11 C -0.116 4.116 12 C -0.257 4.257 13 C 0.087 3.913 14 N -0.318 5.318 15 C 0.414 3.586 16 O -0.498 6.498 17 N -0.373 5.373 18 C -0.036 4.036 19 C -0.148 4.148 20 C -0.099 4.099 21 H 0.102 0.898 22 C -0.113 4.113 23 C -0.165 4.165 24 C -0.180 4.180 25 C -0.185 4.185 26 C 0.004 3.996 27 C -0.276 4.276 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.924 -22.738 5.639 24.164 hybrid contribution 0.086 1.028 0.044 1.033 sum 6.010 -21.709 5.683 23.232 Atomic orbital electron populations 1.69883 1.08994 1.30519 1.36162 1.26757 0.95528 1.04474 0.91232 0.85156 0.79149 0.75922 0.79230 1.18990 1.19265 1.18016 1.19746 0.97559 0.91780 1.43794 0.90303 1.17733 0.91429 0.92604 0.88664 1.21209 1.01019 0.96472 1.02174 1.20792 0.99054 0.92496 0.99262 1.20469 1.00866 0.97063 1.07339 1.17252 0.93611 0.83673 0.96761 1.42421 1.65706 1.04385 1.19245 1.15654 0.78742 0.80294 0.83916 1.90896 1.54892 1.85967 1.18026 1.47654 1.69825 1.04398 1.15463 1.22361 0.99879 0.99718 0.81665 1.22660 1.04434 0.91395 0.96321 1.22344 0.98371 0.93877 0.95299 0.89760 1.22484 1.00001 0.91509 0.97280 1.22937 0.97836 0.96811 0.98925 1.22857 1.00768 0.96364 0.97979 1.22988 1.01268 0.97786 0.96484 1.22201 1.00110 0.80462 0.96779 1.20846 1.05335 0.91949 1.09490 0.90186 0.88165 0.87210 0.88175 0.75011 0.90680 0.90735 0.89145 0.87570 0.88208 0.89961 0.90374 0.89651 0.91422 0.91833 0.90786 0.91607 0.92678 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.25 11.15 21.82 0.24 -44.01 16 2 C 0.03 1.77 5.15 85.25 0.44 2.20 16 3 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.50 -27.23 9.04 23.46 0.21 -27.02 16 8 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16 9 C 0.10 5.51 5.52 -21.31 -0.12 5.39 16 10 C -0.19 -10.51 8.66 22.75 0.20 -10.32 16 11 C -0.10 -5.03 10.02 22.20 0.22 -4.80 16 12 C -0.24 -12.03 8.66 22.58 0.20 -11.83 16 13 C 0.18 8.66 6.27 38.09 0.24 8.90 16 14 N -0.67 -25.61 5.29 -317.33 -1.68 -27.29 16 15 C 0.71 27.39 8.23 179.05 1.47 28.86 16 16 O -0.62 -29.51 14.26 -3.98 -0.06 -29.56 16 17 N -0.64 -17.41 3.33 -829.81 -2.76 -20.17 16 18 C 0.09 1.50 6.16 86.72 0.53 2.04 16 19 C -0.11 -1.23 6.42 31.78 0.20 -1.02 16 20 C -0.08 -1.12 2.79 -9.41 -0.03 -1.15 16 21 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 22 C -0.09 -1.04 3.17 -10.27 -0.03 -1.08 16 23 C -0.13 -1.15 7.65 31.17 0.24 -0.91 16 24 C -0.14 -1.43 8.09 31.18 0.25 -1.18 16 25 C -0.15 -1.90 7.28 31.12 0.23 -1.67 16 26 C 0.13 2.90 6.02 86.85 0.52 3.42 16 27 C -0.25 -12.82 9.70 22.85 0.22 -12.60 16 28 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.10 5.74 6.44 -2.91 -0.02 5.73 16 30 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 31 H 0.10 5.13 6.39 -2.91 -0.02 5.12 16 32 H 0.41 12.59 7.80 -92.71 -0.72 11.87 16 33 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 0.83 7.96 -2.38 -0.02 0.81 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.00 8.04 -2.39 -0.02 0.99 16 38 H 0.08 0.75 7.99 -2.39 -0.02 0.73 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 1.07 8.10 -2.38 -0.02 1.06 16 44 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 45 H 0.05 1.49 8.04 -2.38 -0.02 1.47 16 46 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -70.29 369.83 3.03 -67.26 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.25 Total: 35.86 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 5.00 Total: -22.77 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -4.20 Total: -91.47 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.56 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -70.29 3.03 -67.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591346502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.825 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds