Wall clock time and date at job start Tue Mar 31 2020 10:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86806 * 119.99648 * 2 1 4 4 H 1.48504 * 109.47046 * 274.87064 * 3 2 1 5 5 H 1.48496 * 109.47212 * 34.86764 * 3 2 1 6 6 H 1.48498 * 109.46811 * 154.86924 * 3 2 1 7 7 C 1.39928 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00399 * 4.77937 * 7 2 1 9 9 C 1.41444 * 119.99825 * 184.77640 * 7 2 1 10 10 C 1.40781 * 120.18047 * 324.57451 * 9 7 2 11 11 C 1.37708 * 120.04154 * 180.27560 * 10 9 7 12 12 C 1.38365 * 120.41216 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.36216 * 0.02562 * 12 11 10 14 14 C 1.47883 * 120.02827 * 180.02562 * 13 12 11 15 15 O 1.21544 * 119.99860 * 180.43819 * 14 13 12 16 16 N 1.34779 * 119.99933 * 0.43441 * 14 13 12 17 17 C 1.46501 * 119.99593 * 179.25949 * 16 14 13 18 18 C 1.52993 * 117.50281 * 3.90953 * 17 16 14 19 19 C 1.52990 * 117.50196 * 295.24533 * 17 16 14 20 20 C 1.46495 * 120.00158 * 359.26286 * 16 14 13 21 21 C 1.53119 * 109.52318 * 60.33884 * 20 16 14 22 22 C 1.53036 * 109.28073 * 182.44008 * 21 20 16 23 23 N 1.46848 * 109.52092 * 59.17972 * 22 21 20 24 24 C 1.46843 * 111.19977 * 298.25813 * 23 22 21 25 25 C 1.53043 * 109.52347 * 61.74210 * 24 23 22 26 26 C 1.39036 * 119.94410 * 359.97438 * 13 12 11 27 27 H 0.96997 * 120.00555 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.97637 * 0.24521 * 10 9 7 29 29 H 1.08002 * 119.79268 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.82021 * 179.97438 * 12 11 10 31 31 H 1.09004 * 115.54396 * 149.57526 * 17 16 14 32 32 H 1.09001 * 117.50002 * 359.97438 * 18 17 16 33 33 H 1.09002 * 117.50564 * 145.01352 * 18 17 16 34 34 H 1.09008 * 117.50305 * 214.98213 * 19 17 16 35 35 H 1.09005 * 117.50007 * 359.97438 * 19 17 16 36 36 H 1.08995 * 109.52617 * 180.53257 * 20 16 14 37 37 H 1.08998 * 109.50447 * 302.38398 * 21 20 16 38 38 H 1.09009 * 109.50186 * 62.50060 * 21 20 16 39 39 H 1.09001 * 109.46507 * 299.16538 * 22 21 20 40 40 H 1.08995 * 109.46267 * 179.19780 * 22 21 20 41 41 H 1.00906 * 110.99894 * 174.16215 * 23 22 21 42 42 H 1.08999 * 109.46494 * 301.72564 * 24 23 22 43 43 H 1.09006 * 109.46293 * 181.75864 * 24 23 22 44 44 H 1.08997 * 109.50030 * 180.87999 * 25 24 23 45 45 H 1.08996 * 109.49768 * 60.75988 * 25 24 23 46 46 H 1.08003 * 120.19859 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3867 2.1060 -1.3951 5 1 1.4949 2.6208 0.8004 6 1 3.5874 1.4128 0.5946 7 6 2.0080 -1.2118 0.0005 8 1 1.4709 -2.1455 -0.0770 9 6 3.4187 -1.2138 0.1025 10 6 4.1739 -0.1950 -0.5086 11 6 5.5476 -0.2029 -0.4122 12 6 6.1952 -1.2082 0.2838 13 6 5.4616 -2.2289 0.8976 14 6 6.1613 -3.2994 1.6401 15 8 5.5239 -4.1904 2.1665 16 7 7.5058 -3.2870 1.7332 17 6 8.1979 -4.3386 2.4825 18 6 7.3471 -5.4721 3.0588 19 6 7.9459 -4.4147 3.9896 20 6 8.2752 -2.2220 1.0851 21 6 7.8592 -0.8663 1.6625 22 6 8.6217 0.2463 0.9395 23 7 8.3217 0.1932 -0.4971 24 6 8.7555 -1.0813 -1.0833 25 6 7.9971 -2.2336 -0.4206 26 6 4.0741 -2.2355 0.8098 27 1 -0.4851 0.8400 -0.0004 28 1 3.6756 0.5931 -1.0537 29 1 6.1231 0.5805 -0.8829 30 1 7.2730 -1.2052 0.3530 31 1 9.1967 -4.5903 2.1259 32 1 6.2724 -5.4353 2.8808 33 1 7.7862 -6.4695 3.0816 34 1 8.7788 -4.7169 4.6246 35 1 7.2655 -3.6821 4.4238 36 1 9.3389 -2.3827 1.2602 37 1 6.7878 -0.7240 1.5218 38 1 8.0942 -0.8364 2.7266 39 1 9.6925 0.1114 1.0921 40 1 8.3172 1.2138 1.3385 41 1 8.7371 0.9744 -0.9823 42 1 9.8257 -1.2101 -0.9212 43 1 8.5483 -1.0781 -2.1535 44 1 8.3306 -3.1805 -0.8450 45 1 6.9278 -2.1128 -0.5941 46 1 3.5036 -3.0214 1.2824 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593900717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:27 Heat of formation + Delta-G solvation = 219.125906 kcal Electronic energy + Delta-G solvation = -28085.483640 eV Core-core repulsion = 24563.096073 eV Total energy + Delta-G solvation = -3522.387567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.20164 -40.46266 -38.99780 -37.27122 -35.73276 -35.08511 -32.62253 -31.89476 -31.64656 -31.10423 -27.37338 -25.43977 -24.48806 -24.06890 -23.57020 -23.09173 -22.46540 -21.07043 -20.18599 -18.94278 -18.30425 -18.00522 -17.30157 -16.83866 -16.47056 -16.19209 -16.15821 -15.67310 -15.34843 -15.05190 -14.79221 -14.67942 -14.58198 -14.25422 -14.13165 -14.05686 -13.78976 -13.21502 -13.04692 -12.99234 -12.70771 -12.38489 -12.36666 -12.28361 -12.02696 -11.62227 -11.54863 -11.45139 -11.35368 -11.17776 -10.95291 -10.13582 -9.87918 -9.62021 -9.31326 -8.98852 -8.89598 -8.68357 -6.40185 0.20322 0.88829 1.27211 1.43185 1.49419 1.83367 1.95390 2.16849 2.70265 2.93408 3.24651 3.42854 3.48168 3.61923 3.78471 3.92606 3.97527 4.08194 4.13806 4.18080 4.23425 4.37068 4.44673 4.47947 4.50952 4.66718 4.75322 4.80180 4.86435 4.87830 4.96832 5.05366 5.06409 5.08283 5.19398 5.28825 5.36653 5.41926 5.46178 5.55245 5.83589 5.85955 5.88332 6.05841 6.13371 6.15197 6.36499 6.45329 6.71318 6.77084 6.84465 7.27568 8.35585 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014574 B = 0.005608 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.790725 B = 4991.300851 C = 6350.123921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.029 3.971 3 Si 0.959 3.041 4 H -0.251 1.251 5 H -0.293 1.293 6 H -0.214 1.214 7 C -0.493 4.493 8 H 0.036 0.964 9 C 0.031 3.969 10 C -0.176 4.176 11 C -0.115 4.115 12 C -0.175 4.175 13 C -0.183 4.183 14 C 0.562 3.438 15 O -0.572 6.572 16 N -0.574 5.574 17 C 0.069 3.931 18 C -0.227 4.227 19 C -0.185 4.185 20 C 0.139 3.861 21 C -0.209 4.209 22 C 0.066 3.934 23 N -0.703 5.703 24 C 0.067 3.933 25 C -0.209 4.209 26 C -0.146 4.146 27 H 0.288 0.712 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.264 0.736 31 H 0.163 0.837 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.365 0.635 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.118 0.882 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.524 2.253 0.380 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.176 1.176 5 H -0.221 1.221 6 H -0.138 1.138 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.195 4.195 11 C -0.133 4.133 12 C -0.191 4.191 13 C -0.186 4.186 14 C 0.355 3.645 15 O -0.454 6.454 16 N -0.303 5.303 17 C -0.035 4.035 18 C -0.264 4.264 19 C -0.223 4.223 20 C 0.036 3.964 21 C -0.245 4.245 22 C -0.063 4.063 23 N -0.338 5.338 24 C -0.063 4.063 25 C -0.246 4.246 26 C -0.167 4.167 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.176 0.824 30 H 0.278 0.722 31 H 0.180 0.820 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.186 0.814 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.135 0.865 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.337 1.661 0.730 26.399 hybrid contribution -0.638 0.040 0.195 0.668 sum 25.699 1.701 0.925 25.772 Atomic orbital electron populations 1.69690 1.09217 1.30738 1.41718 1.26925 0.95743 1.04467 0.90817 0.85824 0.80528 0.75232 0.80136 1.17631 1.22059 1.13759 1.19349 0.91499 0.93935 1.47726 0.94594 1.17664 0.93007 0.93642 0.92800 1.21424 0.95838 0.99571 1.02702 1.21186 0.91793 1.00058 1.00236 1.25004 1.07961 0.91541 0.94550 1.19772 0.93370 0.99000 1.06452 1.18788 0.82337 0.84557 0.78792 1.90326 1.67563 1.38018 1.49543 1.47282 1.04305 1.26721 1.51976 1.22040 0.97958 0.91695 0.91775 1.24418 1.04364 0.94329 1.03256 1.23278 1.03772 1.02233 0.93047 1.21686 0.97370 0.85617 0.91707 1.23784 1.06088 0.94206 1.00471 1.21871 0.98118 0.98448 0.87864 1.60332 1.64635 1.05382 1.03434 1.21880 0.97243 0.87539 0.99614 1.23789 1.06402 1.00516 0.93849 1.21132 0.93557 1.00498 1.01475 0.90256 0.88886 0.82386 0.72233 0.81962 0.85784 0.87478 0.85472 0.91632 0.85154 0.86571 0.90986 0.92006 0.89158 0.81372 0.92030 0.88982 0.90645 0.86488 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.34 13.93 21.82 0.30 -53.04 16 2 C 0.03 1.70 5.52 85.25 0.47 2.17 16 3 Si 0.96 43.40 24.59 68.60 1.69 45.09 16 4 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.21 -9.22 5.32 99.48 0.53 -8.69 16 7 C -0.49 -30.44 9.65 23.47 0.23 -30.21 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.03 1.67 5.26 -21.32 -0.11 1.56 16 10 C -0.18 -8.08 6.42 22.77 0.15 -7.94 16 11 C -0.12 -4.19 9.40 22.17 0.21 -3.98 16 12 C -0.17 -5.97 1.73 22.70 0.04 -5.93 16 13 C -0.18 -7.85 5.02 -20.13 -0.10 -7.95 16 14 C 0.56 22.39 7.11 86.80 0.62 23.01 16 15 O -0.57 -26.54 12.46 -3.85 -0.05 -26.59 16 16 N -0.57 -16.21 2.77 -898.12 -2.48 -18.69 16 17 C 0.07 1.60 6.47 44.99 0.29 1.89 16 18 C -0.23 -6.33 9.57 30.61 0.29 -6.04 16 19 C -0.18 -4.39 10.30 30.61 0.32 -4.08 16 20 C 0.14 2.83 2.64 45.07 0.12 2.94 16 21 C -0.21 -4.50 4.90 30.65 0.15 -4.35 16 22 C 0.07 0.92 6.46 86.33 0.56 1.48 16 23 N -0.70 -9.79 3.76 -514.00 -1.93 -11.73 16 24 C 0.07 0.89 6.46 86.33 0.56 1.45 16 25 C -0.21 -4.37 4.89 30.65 0.15 -4.22 16 26 C -0.15 -7.70 9.34 23.01 0.21 -7.49 16 27 H 0.29 15.65 8.30 -92.71 -0.77 14.88 16 28 H 0.09 4.16 3.86 -2.91 -0.01 4.15 16 29 H 0.16 4.58 6.63 -2.91 -0.02 4.56 16 30 H 0.26 6.51 0.00 0.00 0.00 6.51 16 31 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.13 4.73 4.47 -69.02 -0.31 4.42 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.13 1.69 7.93 -2.39 -0.02 1.67 16 37 H 0.12 3.56 3.16 -73.07 -0.23 3.33 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.36 3.14 8.90 -89.69 -0.80 2.34 16 42 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.12 3.51 3.16 -72.70 -0.23 3.28 16 46 H 0.08 4.45 7.64 -2.91 -0.02 4.43 16 Total: -1.00 -77.23 331.68 0.99 -76.25 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.68 Total: 36.39 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.14 Total: -47.67 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -4.11 Total: -83.46 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.69 Total: 45.09 kcal Total: -77.23 0.99 -76.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593900717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 295.373 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 219.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds