Wall clock time and date at job start Tue Mar 31 2020 10:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00023 * 2 1 4 4 H 1.48501 * 109.47120 * 269.99710 * 3 2 1 5 5 H 1.48493 * 109.47522 * 29.99698 * 3 2 1 6 6 H 1.48506 * 109.47197 * 149.99879 * 3 2 1 7 7 C 1.37871 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00516 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00105 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47428 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99842 * 89.99540 * 10 9 7 12 12 O 1.21286 * 119.99943 * 3.87253 * 11 10 9 13 13 C 1.50699 * 119.99640 * 183.86392 * 11 10 9 14 14 N 1.46907 * 109.46734 * 185.18307 * 13 11 10 15 15 C 1.47160 * 111.00000 * 67.70736 * 14 13 11 16 16 C 1.52986 * 108.60265 * 199.59201 * 15 14 13 17 17 C 1.52529 * 109.76128 * 304.86297 * 16 15 14 18 18 H 1.08999 * 114.56093 * 166.63944 * 17 16 15 19 19 C 1.50896 * 120.37044 * 311.03443 * 17 16 15 20 20 C 1.52404 * 118.89518 * 22.28491 * 17 16 15 21 21 H 1.09005 * 117.38308 * 142.26596 * 20 17 16 22 22 C 1.46739 * 110.99630 * 190.78984 * 14 13 11 23 23 C 1.39920 * 120.00111 * 270.00623 * 10 9 7 24 24 C 1.38871 * 120.07625 * 109.50060 * 23 10 9 25 25 C 1.38108 * 119.93294 * 179.72043 * 24 23 10 26 26 C 1.38286 * 120.06972 * 0.57741 * 25 24 23 27 27 C 1.38285 * 120.13887 * 359.67590 * 26 25 24 28 28 C 1.38111 * 120.07174 * 0.04397 * 27 26 25 29 29 H 0.97001 * 119.99724 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46638 * 59.99984 * 9 7 2 31 31 H 1.08997 * 109.46934 * 300.00059 * 9 7 2 32 32 H 1.08994 * 109.47151 * 65.18136 * 13 11 10 33 33 H 1.08994 * 109.47389 * 305.17805 * 13 11 10 34 34 H 1.08996 * 109.61679 * 319.32410 * 15 14 13 35 35 H 1.08996 * 109.61584 * 79.85842 * 15 14 13 36 36 H 1.09000 * 109.39090 * 65.67213 * 16 15 14 37 37 H 1.09002 * 109.38996 * 185.36770 * 16 15 14 38 38 H 1.09004 * 117.61511 * 0.83699 * 19 17 16 39 39 H 1.09001 * 117.24250 * 215.98365 * 19 17 16 40 40 H 1.09000 * 109.36527 * 60.33347 * 22 14 13 41 41 H 1.09000 * 109.36393 * 300.73165 * 22 14 13 42 42 H 1.08006 * 120.03277 * 359.97438 * 24 23 10 43 43 H 1.08003 * 119.97114 * 180.25054 * 25 24 23 44 44 H 1.07997 * 119.93037 * 179.70572 * 26 25 24 45 45 H 1.07996 * 119.96447 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.03622 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6408 -4.1249 1.1678 12 8 2.1942 -3.7115 2.2169 13 6 3.6852 -5.2113 1.1692 14 7 3.9000 -5.6821 2.5441 15 6 2.7118 -6.3860 3.0522 16 6 2.7796 -6.4177 4.5803 17 6 4.0986 -7.0413 5.0251 18 1 4.3340 -6.8990 6.0798 19 6 4.5638 -8.3477 4.4303 20 6 5.2771 -7.0391 4.0588 21 1 6.2693 -6.8729 4.4786 22 6 5.0800 -6.5507 2.6241 23 6 2.6576 -4.1444 -1.2112 24 6 3.9705 -3.9369 -1.6132 25 6 4.4178 -4.4680 -2.8070 26 6 3.5565 -5.1957 -3.6076 27 6 2.2470 -5.3997 -3.2127 28 6 1.7952 -4.8761 -2.0172 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5566 0.8903 32 1 4.6197 -4.8174 0.7698 33 1 3.3466 -6.0416 0.5496 34 1 1.8114 -5.8588 2.7368 35 1 2.6968 -7.4049 2.6655 36 1 2.6976 -5.4020 4.9673 37 1 1.9559 -7.0181 4.9667 38 1 3.9328 -8.8104 3.6714 39 1 5.0889 -9.0377 5.0908 40 1 5.9615 -5.9929 2.3080 41 1 4.9425 -7.4087 1.9659 42 1 4.6423 -3.3643 -0.9909 43 1 5.4399 -4.3104 -3.1183 44 1 3.9074 -5.6059 -4.5430 45 1 1.5769 -5.9687 -3.8399 46 1 0.7723 -5.0354 -1.7096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595810524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:08 Heat of formation + Delta-G solvation = 14.517086 kcal Electronic energy + Delta-G solvation = -26604.553655 eV Core-core repulsion = 23073.293584 eV Total energy + Delta-G solvation = -3531.260071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60007 -40.53191 -39.36300 -36.65727 -35.97535 -34.78384 -32.24080 -31.84348 -30.98238 -30.02034 -28.44382 -26.03689 -25.06020 -24.10621 -23.42226 -23.21920 -22.23990 -20.40796 -19.46068 -18.74361 -18.34077 -17.73839 -17.19889 -17.08866 -16.74316 -16.24743 -16.02354 -15.68006 -15.30654 -15.06647 -14.97506 -14.79578 -14.39566 -14.27674 -14.24338 -13.58828 -13.57416 -13.39907 -13.25746 -13.11055 -12.96293 -12.66602 -12.44907 -12.24494 -12.18097 -12.11168 -12.07456 -11.75637 -11.68565 -10.89861 -10.84041 -10.67900 -10.66088 -10.02969 -9.82532 -9.32018 -9.21889 -8.25860 -6.40705 0.37421 0.50823 1.33623 1.36935 1.47127 1.70954 2.06989 2.36714 2.73358 2.87705 3.04064 3.07822 3.58259 3.72662 3.83085 3.99290 4.06290 4.09426 4.13248 4.19783 4.26629 4.29480 4.32530 4.43973 4.49086 4.60683 4.61412 4.67663 4.76956 4.84850 4.88413 4.98881 4.99366 5.10679 5.14391 5.16412 5.19553 5.27243 5.31251 5.43194 5.54736 5.63003 5.67591 5.77450 5.91170 6.00000 6.08247 6.10281 6.65592 6.75524 7.23674 7.40226 8.81644 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.004603 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.496500 B = 6081.596037 C = 7718.728750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.268 3.732 10 N -0.568 5.568 11 C 0.506 3.494 12 O -0.561 6.561 13 C 0.059 3.941 14 N -0.535 5.535 15 C 0.057 3.943 16 C -0.078 4.078 17 C -0.142 4.142 18 H 0.106 0.894 19 C -0.164 4.164 20 C -0.155 4.155 21 H 0.122 0.878 22 C 0.084 3.916 23 C 0.124 3.876 24 C -0.134 4.134 25 C -0.102 4.102 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.142 4.142 29 H 0.268 0.732 30 H 0.017 0.983 31 H 0.003 0.997 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -18.894 -2.487 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.148 3.852 10 N -0.296 5.296 11 C 0.295 3.705 12 O -0.439 6.439 13 C -0.072 4.072 14 N -0.260 5.260 15 C -0.071 4.071 16 C -0.115 4.115 17 C -0.161 4.161 18 H 0.124 0.876 19 C -0.201 4.201 20 C -0.173 4.173 21 H 0.140 0.860 22 C -0.043 4.043 23 C 0.033 3.967 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.021 0.979 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.133 0.867 43 H 0.172 0.828 44 H 0.178 0.822 45 H 0.169 0.831 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.704 -18.134 -1.597 21.642 hybrid contribution -0.583 0.882 -0.161 1.070 sum 11.121 -17.252 -1.759 20.601 Atomic orbital electron populations 1.70051 1.07567 1.28232 1.50882 1.25838 0.95808 1.02996 0.94269 0.85408 0.78353 0.78234 0.78811 1.18827 1.20364 1.19656 1.21610 0.93174 0.91709 1.51463 0.92966 1.18777 0.87595 0.83218 0.95580 1.45805 1.45394 1.33949 1.04470 1.21150 0.82996 0.83668 0.82649 1.90638 1.58655 1.62488 1.32087 1.21844 0.98445 0.95720 0.91193 1.61878 1.04934 1.40057 1.19172 1.22124 0.92505 0.95731 0.96733 1.20830 0.96640 1.00225 0.93839 1.21629 0.94917 1.01077 0.98456 0.87561 1.22987 1.03056 0.90343 1.03684 1.22341 0.97956 1.01866 0.95130 0.85982 1.21706 0.92461 0.94679 0.95406 1.18021 0.94246 0.96722 0.87676 1.21434 0.94931 1.00500 0.98517 1.21362 1.01342 0.96651 0.92684 1.21564 0.93008 0.98506 1.00582 1.21327 0.97085 0.99150 0.94700 1.21398 0.99447 0.98711 0.96601 0.92321 0.96466 0.97872 0.86720 0.91072 0.93364 0.93428 0.93029 0.90421 0.89162 0.86849 0.89384 0.93303 0.86745 0.82769 0.82242 0.83085 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.45 13.29 21.44 0.28 -57.17 16 2 C 0.01 0.59 5.46 84.65 0.46 1.05 16 3 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.54 -32.39 9.39 25.60 0.24 -32.15 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.27 15.25 5.15 85.63 0.44 15.69 16 10 N -0.57 -26.13 2.50 -635.29 -1.59 -27.72 16 11 C 0.51 22.73 6.99 87.66 0.61 23.34 16 12 O -0.56 -30.36 14.52 -3.05 -0.04 -30.40 16 13 C 0.06 1.92 4.03 85.56 0.35 2.27 16 14 N -0.54 -16.73 4.30 -900.89 -3.88 -20.61 16 15 C 0.06 1.74 4.87 86.25 0.42 2.16 16 16 C -0.08 -2.14 6.25 30.43 0.19 -1.95 16 17 C -0.14 -3.10 6.04 -11.83 -0.07 -3.18 16 18 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 19 C -0.16 -2.77 9.60 30.11 0.29 -2.48 16 20 C -0.15 -3.11 6.37 -10.84 -0.07 -3.18 16 21 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 22 C 0.08 1.91 5.31 86.28 0.46 2.37 16 23 C 0.12 4.57 4.29 38.15 0.16 4.74 16 24 C -0.13 -4.16 8.58 22.39 0.19 -3.97 16 25 C -0.10 -2.28 10.04 22.25 0.22 -2.06 16 26 C -0.12 -2.33 10.04 22.29 0.22 -2.11 16 27 C -0.10 -2.42 10.04 22.25 0.22 -2.19 16 28 C -0.14 -4.54 9.78 22.39 0.22 -4.32 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 30 H 0.02 1.01 7.93 -2.38 -0.02 0.99 16 31 H 0.00 0.21 7.37 -2.39 -0.02 0.19 16 32 H 0.11 3.37 7.07 -2.39 -0.02 3.35 16 33 H 0.07 2.08 7.85 -2.39 -0.02 2.06 16 34 H 0.05 1.83 6.19 -2.39 -0.01 1.81 16 35 H 0.05 1.24 7.01 -2.39 -0.02 1.23 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 1.56 7.25 -2.38 -0.02 1.54 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 41 H 0.05 0.97 8.06 -2.39 -0.02 0.95 16 42 H 0.11 3.67 7.85 -2.91 -0.02 3.65 16 43 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 46 H 0.11 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -76.42 371.47 2.32 -74.10 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.95 Total: 19.63 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 4.56 Total: -5.96 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.18 Total: -105.49 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.40 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.42 2.32 -74.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595810524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.619 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds