Wall clock time and date at job start Tue Mar 31 2020 11:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34545 * 126.08170 * 2 1 4 4 O 1.34775 * 107.27221 * 179.71774 * 3 2 1 5 5 C 1.34419 * 107.68993 * 0.42386 * 4 3 2 6 6 C 1.47839 * 125.72359 * 179.83865 * 5 4 3 7 7 C 1.39481 * 120.11035 * 173.75510 * 6 5 4 8 8 C 1.38632 * 119.77477 * 179.97438 * 7 6 5 9 9 N 1.39706 * 119.99956 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99977 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47379 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46776 * 55.00076 * 11 10 9 13 13 C 1.53001 * 109.46974 * 295.00400 * 11 10 9 14 14 C 1.52995 * 109.47199 * 174.99996 * 11 10 9 15 15 C 1.50703 * 109.46892 * 185.00012 * 14 11 10 16 16 H 1.07991 * 120.00240 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99763 * 179.97438 * 15 14 11 18 18 N 1.31519 * 120.00220 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00144 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46881 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47105 * 120.00003 * 19 17 15 22 22 H 1.48503 * 109.46971 * 240.00329 * 19 17 15 23 23 C 1.39033 * 119.99618 * 0.02562 * 8 7 6 24 24 C 1.38200 * 120.21757 * 359.74066 * 23 8 7 25 25 C 1.38029 * 120.22227 * 0.51408 * 24 23 8 26 26 C 1.50697 * 119.99848 * 179.76690 * 25 24 23 27 27 N 1.31214 * 108.55286 * 359.56897 * 5 4 3 28 28 H 1.09004 * 109.47076 * 270.00356 * 1 2 3 29 29 H 1.09001 * 109.47409 * 29.99700 * 1 2 3 30 30 H 1.09000 * 109.47272 * 150.00097 * 1 2 3 31 31 H 1.08005 * 126.36556 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.11131 * 359.96109 * 7 6 5 33 33 H 0.96997 * 119.99814 * 0.02562 * 9 8 7 34 34 H 1.09002 * 109.47338 * 300.00746 * 10 9 8 35 35 H 1.08997 * 109.46969 * 60.00100 * 10 9 8 36 36 H 1.08997 * 109.46642 * 180.02562 * 13 11 10 37 37 H 1.09003 * 109.46737 * 299.99775 * 13 11 10 38 38 H 1.09000 * 109.47106 * 59.99448 * 13 11 10 39 39 H 1.09006 * 109.47496 * 305.00097 * 14 11 10 40 40 H 1.09000 * 109.47519 * 65.00102 * 14 11 10 41 41 H 0.97002 * 120.00337 * 179.97438 * 18 17 15 42 42 H 1.07995 * 119.88918 * 179.97438 * 23 8 7 43 43 H 1.07996 * 119.88554 * 180.27702 * 24 23 8 44 44 H 1.09007 * 109.46841 * 263.36856 * 26 25 24 45 45 H 1.08997 * 109.47790 * 143.36385 * 26 25 24 46 46 H 1.09001 * 109.47009 * 23.36201 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2994 1.0874 0.0000 4 8 3.5751 0.6528 0.0063 5 6 3.5489 -0.6911 0.0007 6 6 4.7321 -1.5775 0.0012 7 6 4.5724 -2.9575 0.1261 8 6 5.6867 -3.7824 0.1252 9 7 5.5322 -5.1652 0.2506 10 6 6.7097 -6.0367 0.2503 11 6 6.2661 -7.4935 0.3992 12 1 5.5459 -7.7356 -0.3823 13 6 5.6166 -7.6911 1.7704 14 6 7.4829 -8.4124 0.2740 15 6 7.0312 -9.8500 0.2976 16 1 5.9813 -10.0846 0.3921 17 6 7.9582 -10.8656 0.1976 18 7 9.2368 -10.5799 0.0821 19 14 7.3983 -12.6475 0.2263 20 1 5.9206 -12.6999 0.3629 21 1 7.8020 -13.3135 -1.0381 22 1 8.0273 -13.3456 1.3762 23 6 6.9578 -3.2332 0.0006 24 6 7.1155 -1.8663 -0.1280 25 6 6.0127 -1.0362 -0.1230 26 6 6.1907 0.4541 -0.2583 27 7 2.2971 -1.0842 0.0004 28 1 -0.3633 0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9737 2.1171 -0.0004 32 1 3.5841 -3.3820 0.2235 33 1 4.6453 -5.5482 0.3380 34 1 7.2508 -5.9162 -0.6883 35 1 7.3609 -5.7680 1.0820 36 1 5.3010 -8.7290 1.8766 37 1 6.3369 -7.4489 2.5518 38 1 4.7498 -7.0363 1.8595 39 1 7.9971 -8.2086 -0.6653 40 1 8.1623 -8.2314 1.1068 41 1 9.8891 -11.2944 0.0121 42 1 7.8247 -3.8773 0.0005 43 1 8.1051 -1.4458 -0.2290 44 1 6.1840 0.9121 0.7309 45 1 5.3759 0.8648 -0.8545 46 1 7.1413 0.6633 -0.7490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602497075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:57 Heat of formation + Delta-G solvation = 24.867439 kcal Electronic energy + Delta-G solvation = -24785.103359 eV Core-core repulsion = 21254.292113 eV Total energy + Delta-G solvation = -3530.811246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.46511 -39.57193 -36.92221 -35.43502 -34.43032 -32.64952 -32.35279 -30.75809 -30.39753 -27.57644 -27.15226 -26.52871 -25.05530 -23.93480 -22.71657 -22.08809 -21.31696 -20.22169 -19.30284 -17.63578 -16.91361 -16.73438 -16.51019 -15.77513 -15.20217 -14.82984 -14.65837 -14.55430 -14.34684 -13.85614 -13.79689 -13.54544 -13.50881 -13.20341 -12.94104 -12.65846 -12.55357 -12.34456 -12.01750 -11.91723 -11.61764 -11.47383 -11.24147 -11.13783 -10.93874 -10.88751 -10.65627 -10.41501 -10.36798 -10.06035 -9.76604 -9.45729 -9.33109 -9.06186 -8.39415 -8.36312 -7.19249 -6.03843 -4.05568 0.60960 1.55106 1.71871 2.48499 2.64280 3.28680 3.36638 3.39989 3.65365 3.77051 3.86679 4.43288 4.54851 4.62512 4.83896 4.96772 5.11183 5.20919 5.26109 5.29445 5.32252 5.37764 5.48505 5.55025 5.56956 5.65025 5.65992 5.67580 5.75635 5.89086 5.93341 6.02772 6.09272 6.16942 6.25929 6.34139 6.39708 6.42343 6.57450 6.75583 6.86318 6.98287 7.02599 7.50402 7.56497 7.59826 7.73089 7.92637 7.94875 8.37289 9.00320 9.58392 11.07537 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.002226 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.973342 B =12575.397244 C =13620.770692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 C -0.091 4.091 4 O -0.189 6.189 5 C 0.249 3.751 6 C 0.018 3.982 7 C -0.150 4.150 8 C 0.220 3.780 9 N -0.738 5.738 10 C 0.125 3.875 11 C -0.096 4.096 12 H 0.062 0.938 13 C -0.133 4.133 14 C 0.030 3.970 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.173 4.173 24 C -0.072 4.072 25 C -0.125 4.125 26 C -0.108 4.108 27 N -0.474 5.474 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.214 0.786 32 H 0.133 0.867 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.354 25.095 0.029 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 C -0.161 4.161 4 O -0.075 6.075 5 C 0.046 3.954 6 C 0.016 3.984 7 C -0.175 4.175 8 C 0.114 3.886 9 N -0.365 5.365 10 C 0.002 3.998 11 C -0.115 4.115 12 H 0.081 0.919 13 C -0.190 4.190 14 C -0.008 4.008 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.197 4.197 24 C -0.090 4.090 25 C -0.129 4.129 26 C -0.164 4.164 27 N -0.204 5.204 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.230 0.770 32 H 0.151 0.849 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.168 24.273 0.016 26.719 hybrid contribution -0.410 -0.428 0.054 0.595 sum -11.577 23.845 0.070 26.507 Atomic orbital electron populations 1.20113 0.86514 1.03389 1.02920 1.21837 0.98203 0.88290 1.04958 1.24884 0.80565 1.00968 1.09700 1.84691 1.29719 1.23510 1.69594 1.23897 0.93087 0.78553 0.99855 1.16805 0.86845 0.90112 1.04652 1.20445 0.98349 0.90986 1.07673 1.17685 0.93051 0.84556 0.93309 1.45024 1.09770 1.02109 1.79603 1.21667 0.87022 0.90512 1.00623 1.21441 1.00851 0.91925 0.97277 0.91908 1.21727 0.98728 1.01553 0.96977 1.19088 0.91253 0.93097 0.97345 1.21224 0.93302 0.90975 1.49849 0.92494 1.25020 0.94948 0.99154 0.95400 1.69969 1.00642 1.32359 1.50449 0.86558 0.78813 0.85186 0.77584 1.19774 1.21048 1.21046 1.20916 0.96036 0.95452 1.07273 1.20655 0.97769 0.92466 0.98158 1.19631 0.91531 0.96204 1.05546 1.20790 1.02251 0.91322 1.02072 1.70582 1.00003 1.30976 1.18790 0.90688 0.90751 0.90506 0.76996 0.84922 0.76524 0.92402 0.92471 0.91744 0.93459 0.95038 0.96420 0.96281 0.93047 0.85239 0.85516 0.91607 0.91333 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.13 16 2 C -0.01 -0.12 7.10 -82.88 -0.59 -0.71 16 3 C -0.09 -0.81 12.08 29.43 0.36 -0.46 16 4 O -0.19 -2.14 7.62 4.09 0.03 -2.11 16 5 C 0.25 3.32 7.68 -13.89 -0.11 3.21 16 6 C 0.02 0.24 5.87 -105.00 -0.62 -0.38 16 7 C -0.15 -2.06 9.53 -38.97 -0.37 -2.43 16 8 C 0.22 3.06 6.65 -83.83 -0.56 2.50 16 9 N -0.74 -10.53 5.46 -58.67 -0.32 -10.85 16 10 C 0.13 2.02 4.30 -4.04 -0.02 2.00 16 11 C -0.10 -1.82 2.37 -90.62 -0.22 -2.04 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.13 -2.36 8.88 37.16 0.33 -2.03 16 14 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 15 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 16 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.17 -2.26 9.31 -39.30 -0.37 -2.63 16 24 C -0.07 -0.83 9.65 -39.67 -0.38 -1.21 16 25 C -0.13 -1.50 5.92 -104.20 -0.62 -2.11 16 26 C -0.11 -1.03 8.87 36.00 0.32 -0.72 16 27 N -0.47 -6.48 10.92 -7.97 -0.09 -6.57 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.13 1.80 7.84 -52.49 -0.41 1.39 16 33 H 0.40 5.37 7.66 -40.82 -0.31 5.06 16 34 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 35 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 36 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.13 1.64 6.71 -52.49 -0.35 1.29 16 43 H 0.13 1.15 8.05 -52.49 -0.42 0.73 16 44 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 45 H 0.07 0.68 5.86 -51.93 -0.30 0.38 16 46 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -31.03 377.83 -9.03 -40.06 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.09 Total: 2.36 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.97 Total: -19.30 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.33 Total: -42.98 kcal Atomic # 8 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.03 -9.03 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.923 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds