Wall clock time and date at job start Tue Mar 31 2020 11:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99807 * 2 1 4 4 C 1.53006 * 109.47081 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46816 * 67.27714 * 4 3 2 6 6 C 1.46902 * 111.00033 * 290.59390 * 5 4 3 7 7 C 1.50697 * 109.47097 * 299.82975 * 6 5 4 8 8 H 1.07997 * 120.00299 * 354.87055 * 7 6 5 9 9 C 1.37881 * 120.00065 * 174.86964 * 7 6 5 10 10 N 1.31520 * 119.99694 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00382 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47113 * 89.99764 * 11 9 7 13 13 H 1.48496 * 109.47401 * 210.00294 * 11 9 7 14 14 H 1.48504 * 109.47147 * 330.00332 * 11 9 7 15 15 C 1.46897 * 111.00428 * 54.55268 * 5 4 3 16 16 C 1.50694 * 109.47299 * 66.04141 * 15 5 4 17 17 C 1.39356 * 119.56681 * 90.00161 * 16 15 5 18 18 C 1.36071 * 121.07227 * 179.97438 * 17 16 15 19 19 C 1.40601 * 119.74197 * 359.97438 * 18 17 16 20 20 N 1.33689 * 121.07000 * 180.25587 * 19 18 17 21 21 C 1.31083 * 121.31712 * 180.25774 * 20 19 18 22 22 C 1.50704 * 119.12202 * 179.75262 * 21 20 19 23 23 C 1.39329 * 121.75272 * 359.48096 * 21 20 19 24 24 C 1.36581 * 119.93000 * 0.25053 * 23 21 20 25 25 C 1.40769 * 118.15652 * 0.02562 * 24 23 21 26 26 C 1.36141 * 119.56811 * 270.00461 * 16 15 5 27 27 H 1.08997 * 109.46937 * 60.00804 * 1 2 3 28 28 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47250 * 300.00035 * 1 2 3 30 30 H 1.08993 * 109.47612 * 59.99498 * 3 2 1 31 31 H 1.09007 * 109.46947 * 299.99453 * 3 2 1 32 32 H 1.09003 * 109.46909 * 307.28048 * 4 3 2 33 33 H 1.08991 * 109.46813 * 187.27530 * 4 3 2 34 34 H 1.09000 * 109.46940 * 59.83107 * 6 5 4 35 35 H 1.08998 * 109.47101 * 179.83254 * 6 5 4 36 36 H 0.96998 * 119.99424 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.46762 * 306.04248 * 15 5 4 38 38 H 1.09002 * 109.47446 * 186.04426 * 15 5 4 39 39 H 1.08003 * 119.46666 * 359.96037 * 17 16 15 40 40 H 1.08000 * 120.13231 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.47426 * 269.72779 * 22 21 20 42 42 H 1.08994 * 109.47199 * 29.73450 * 22 21 20 43 43 H 1.09003 * 109.46447 * 149.73225 * 22 21 20 44 44 H 1.07995 * 120.03583 * 180.23644 * 23 21 20 45 45 H 1.08000 * 120.92369 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.19058 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9819 0.6125 -1.2766 6 6 3.5899 -0.7990 -1.3867 7 6 4.2179 -1.5838 -0.2638 8 1 4.9107 -1.1020 0.4102 9 6 3.9079 -2.9169 -0.0969 10 7 3.0645 -3.5036 -0.9180 11 14 4.6856 -3.8895 1.2953 12 1 3.8286 -3.7948 2.5043 13 1 4.8171 -5.3126 0.8919 14 1 6.0296 -3.3343 1.5966 15 6 3.4679 1.3916 -2.4108 16 6 4.0865 2.7657 -2.3979 17 6 5.2798 2.9891 -3.0821 18 6 5.8647 4.2176 -3.0912 19 6 5.2601 5.2832 -2.4014 20 7 5.8091 6.5021 -2.3969 21 6 5.2521 7.4978 -1.7513 22 6 5.9166 8.8503 -1.7748 23 6 4.0593 7.3404 -1.0487 24 6 3.4429 6.1220 -1.0169 25 6 4.0469 5.0538 -1.7066 26 6 3.4723 3.7726 -1.7179 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8482 0.5356 0.8186 33 1 3.9780 2.1722 0.1308 34 1 2.5048 -0.8806 -1.3245 35 1 3.9301 -1.1970 -2.3427 36 1 2.8467 -4.4416 -0.8008 37 1 2.3845 1.4801 -2.3296 38 1 3.7223 0.8874 -3.3431 39 1 5.7480 2.1738 -3.6136 40 1 6.7899 4.3736 -3.6261 41 1 6.6070 8.9305 -0.9352 42 1 6.4652 8.9694 -2.7090 43 1 5.1580 9.6291 -1.6970 44 1 3.6228 8.1808 -0.5296 45 1 2.5181 5.9819 -0.4770 46 1 2.5480 3.5872 -1.1909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615113811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:18 Heat of formation + Delta-G solvation = 20.617734 kcal Electronic energy + Delta-G solvation = -26163.427017 eV Core-core repulsion = 22632.431489 eV Total energy + Delta-G solvation = -3530.995527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87942 -38.66273 -37.25253 -35.55069 -33.51739 -32.69854 -31.93797 -30.15035 -29.32769 -28.49624 -26.52360 -25.81497 -24.29309 -23.77247 -22.70161 -22.03944 -21.62238 -19.54104 -17.96530 -16.75521 -16.56842 -16.12260 -16.01634 -15.73979 -14.87389 -14.67738 -14.43787 -14.35687 -14.13612 -14.10835 -13.90446 -13.43428 -13.04162 -13.01147 -12.93720 -12.38350 -12.26493 -11.96281 -11.66921 -11.49331 -11.32992 -11.27320 -11.03915 -11.03104 -10.83619 -10.64264 -10.57760 -10.54865 -10.10539 -9.77882 -9.51315 -9.06909 -8.97178 -8.56117 -8.29256 -8.07817 -7.07314 -5.87724 -3.85205 0.43244 0.85025 2.05033 2.93477 3.39178 3.44968 3.49032 4.10943 4.13792 4.39636 4.50249 4.54868 4.67967 4.76714 4.88706 5.10007 5.14327 5.21110 5.31981 5.37661 5.39822 5.41952 5.49385 5.53855 5.62091 5.68386 5.73799 5.78643 5.82517 5.87217 5.93313 5.98786 6.10132 6.13489 6.14909 6.21034 6.29637 6.41357 6.56484 6.73239 6.81194 6.95298 7.36329 7.73766 7.85006 7.89931 7.92588 8.14631 8.32705 8.67741 9.19921 9.75778 11.23698 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.003228 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.585992 B = 8671.929979 C = 9234.730408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.021 3.979 4 C 0.060 3.940 5 N -0.525 5.525 6 C 0.182 3.818 7 C -0.492 4.492 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.079 3.921 16 C -0.051 4.051 17 C -0.071 4.071 18 C -0.102 4.102 19 C 0.128 3.872 20 N -0.475 5.475 21 C 0.146 3.854 22 C -0.104 4.104 23 C -0.179 4.179 24 C -0.055 4.055 25 C -0.102 4.102 26 C -0.103 4.103 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.257 0.743 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 21.043 -1.617 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C -0.058 4.058 4 C -0.069 4.069 5 N -0.248 5.248 6 C 0.058 3.942 7 C -0.531 4.531 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.200 1.200 15 C -0.049 4.049 16 C -0.052 4.052 17 C -0.091 4.091 18 C -0.121 4.121 19 C 0.006 3.994 20 N -0.185 5.185 21 C -0.007 4.007 22 C -0.161 4.161 23 C -0.199 4.199 24 C -0.081 4.081 25 C -0.104 4.104 26 C -0.122 4.122 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.495 20.704 -2.177 20.824 hybrid contribution -1.631 -0.582 1.354 2.198 sum -2.126 20.122 -0.824 20.251 Atomic orbital electron populations 1.22682 0.83695 1.02336 0.98250 1.88497 1.17334 1.25525 1.94545 1.23410 0.97657 0.86184 0.98503 1.22233 0.89311 0.99806 0.95517 1.62379 1.58210 1.05194 0.99001 1.20060 0.97235 0.80027 0.96912 1.21024 1.24917 0.94302 1.12859 0.92480 1.24863 0.95359 0.97718 0.96217 1.69959 1.34846 1.11438 1.37508 0.86633 0.79648 0.79229 0.82640 1.20975 1.21523 1.20023 1.21179 0.96482 0.90020 0.97187 1.19831 0.94601 0.95652 0.95099 1.20902 0.94277 0.96570 0.97369 1.20741 1.00345 0.91305 0.99720 1.18819 0.92129 0.91621 0.96799 1.67832 1.32659 0.99220 1.18766 1.21403 0.91967 0.95153 0.92168 1.20739 1.00665 0.91068 1.03659 1.21621 0.97320 0.98528 1.02399 1.21450 0.98886 0.92038 0.95743 1.18785 0.96524 0.95003 1.00049 1.20891 1.00279 0.91273 0.99781 0.95312 0.89912 0.95342 0.94650 0.94108 0.88574 0.91485 0.94389 0.96426 0.93358 0.94190 0.90264 0.84893 0.84949 0.90374 0.90498 0.90781 0.84946 0.84660 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.34 -7.06 7.57 -35.23 -0.27 -7.32 16 3 C 0.02 0.36 5.16 37.16 0.19 0.55 16 4 C 0.06 1.14 5.17 -3.82 -0.02 1.12 16 5 N -0.52 -10.91 4.74 -237.52 -1.13 -12.03 16 6 C 0.18 4.62 4.27 -4.98 -0.02 4.60 16 7 C -0.49 -13.72 8.22 -34.44 -0.28 -14.01 16 8 H 0.06 1.60 6.97 -52.49 -0.37 1.23 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 11 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.36 4.79 -4.98 -0.02 1.34 16 16 C -0.05 -0.77 4.87 -104.96 -0.51 -1.28 16 17 C -0.07 -1.01 9.58 -39.94 -0.38 -1.40 16 18 C -0.10 -1.43 9.98 -39.47 -0.39 -1.82 16 19 C 0.13 1.87 6.60 -84.85 -0.56 1.31 16 20 N -0.48 -6.70 10.24 -7.22 -0.07 -6.77 16 21 C 0.15 1.66 6.78 -82.50 -0.56 1.10 16 22 C -0.10 -0.79 10.14 36.01 0.37 -0.43 16 23 C -0.18 -1.79 9.64 -39.77 -0.38 -2.18 16 24 C -0.06 -0.61 9.90 -39.22 -0.39 -1.00 16 25 C -0.10 -1.39 5.74 -106.80 -0.61 -2.00 16 26 C -0.10 -1.42 7.70 -39.51 -0.30 -1.73 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.64 4.43 -51.93 -0.23 0.41 16 32 H 0.10 2.09 6.33 -51.93 -0.33 1.76 16 33 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 34 H 0.04 1.04 5.29 -51.93 -0.27 0.76 16 35 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.04 0.68 5.65 -51.93 -0.29 0.39 16 38 H 0.08 1.36 7.95 -51.93 -0.41 0.95 16 39 H 0.13 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 1.57 6.10 -52.49 -0.32 1.25 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -32.33 366.45 -9.87 -42.19 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.76 Total: 0.04 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.87 Total: -12.67 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.46 Total: -44.72 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.27 Total: -7.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.33 -9.87 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.808 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds