Wall clock time and date at job start Tue Mar 31 2020 11:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99807 * 2 1 4 4 C 1.53006 * 109.47081 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46816 * 67.27714 * 4 3 2 6 6 C 1.46902 * 111.00033 * 290.59390 * 5 4 3 7 7 C 1.50697 * 109.47097 * 299.82975 * 6 5 4 8 8 H 1.07997 * 120.00299 * 354.87055 * 7 6 5 9 9 C 1.37881 * 120.00065 * 174.86964 * 7 6 5 10 10 N 1.31520 * 119.99694 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00382 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47113 * 89.99764 * 11 9 7 13 13 H 1.48496 * 109.47401 * 210.00294 * 11 9 7 14 14 H 1.48504 * 109.47147 * 330.00332 * 11 9 7 15 15 C 1.46897 * 111.00428 * 54.55268 * 5 4 3 16 16 C 1.50694 * 109.47299 * 66.04141 * 15 5 4 17 17 C 1.39356 * 119.56681 * 90.00161 * 16 15 5 18 18 C 1.36071 * 121.07227 * 179.97438 * 17 16 15 19 19 C 1.40601 * 119.74197 * 359.97438 * 18 17 16 20 20 N 1.33689 * 121.07000 * 180.25587 * 19 18 17 21 21 C 1.31083 * 121.31712 * 180.25774 * 20 19 18 22 22 C 1.50704 * 119.12202 * 179.75262 * 21 20 19 23 23 C 1.39329 * 121.75272 * 359.48096 * 21 20 19 24 24 C 1.36581 * 119.93000 * 0.25053 * 23 21 20 25 25 C 1.40769 * 118.15652 * 0.02562 * 24 23 21 26 26 C 1.36141 * 119.56811 * 270.00461 * 16 15 5 27 27 H 1.08997 * 109.46937 * 60.00804 * 1 2 3 28 28 H 1.08999 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47250 * 300.00035 * 1 2 3 30 30 H 1.08993 * 109.47612 * 59.99498 * 3 2 1 31 31 H 1.09007 * 109.46947 * 299.99453 * 3 2 1 32 32 H 1.09003 * 109.46909 * 307.28048 * 4 3 2 33 33 H 1.08991 * 109.46813 * 187.27530 * 4 3 2 34 34 H 1.09000 * 109.46940 * 59.83107 * 6 5 4 35 35 H 1.08998 * 109.47101 * 179.83254 * 6 5 4 36 36 H 0.96998 * 119.99424 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.46762 * 306.04248 * 15 5 4 38 38 H 1.09002 * 109.47446 * 186.04426 * 15 5 4 39 39 H 1.08003 * 119.46666 * 359.96037 * 17 16 15 40 40 H 1.08000 * 120.13231 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.47426 * 269.72779 * 22 21 20 42 42 H 1.08994 * 109.47199 * 29.73450 * 22 21 20 43 43 H 1.09003 * 109.46447 * 149.73225 * 22 21 20 44 44 H 1.07995 * 120.03583 * 180.23644 * 23 21 20 45 45 H 1.08000 * 120.92369 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.19058 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9819 0.6125 -1.2766 6 6 3.5899 -0.7990 -1.3867 7 6 4.2179 -1.5838 -0.2638 8 1 4.9107 -1.1020 0.4102 9 6 3.9079 -2.9169 -0.0969 10 7 3.0645 -3.5036 -0.9180 11 14 4.6856 -3.8895 1.2953 12 1 3.8286 -3.7948 2.5043 13 1 4.8171 -5.3126 0.8919 14 1 6.0296 -3.3343 1.5966 15 6 3.4679 1.3916 -2.4108 16 6 4.0865 2.7657 -2.3979 17 6 5.2798 2.9891 -3.0821 18 6 5.8647 4.2176 -3.0912 19 6 5.2601 5.2832 -2.4014 20 7 5.8091 6.5021 -2.3969 21 6 5.2521 7.4978 -1.7513 22 6 5.9166 8.8503 -1.7748 23 6 4.0593 7.3404 -1.0487 24 6 3.4429 6.1220 -1.0169 25 6 4.0469 5.0538 -1.7066 26 6 3.4723 3.7726 -1.7179 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8482 0.5356 0.8186 33 1 3.9780 2.1722 0.1308 34 1 2.5048 -0.8806 -1.3245 35 1 3.9301 -1.1970 -2.3427 36 1 2.8467 -4.4416 -0.8008 37 1 2.3845 1.4801 -2.3296 38 1 3.7223 0.8874 -3.3431 39 1 5.7480 2.1738 -3.6136 40 1 6.7899 4.3736 -3.6261 41 1 6.6070 8.9305 -0.9352 42 1 6.4652 8.9694 -2.7090 43 1 5.1580 9.6291 -1.6970 44 1 3.6228 8.1808 -0.5296 45 1 2.5181 5.9819 -0.4770 46 1 2.5480 3.5872 -1.1909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615113811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:17 Heat of formation + Delta-G solvation = 0.273708 kcal Electronic energy + Delta-G solvation = -26164.309200 eV Core-core repulsion = 22632.431489 eV Total energy + Delta-G solvation = -3531.877711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84924 -40.02852 -38.42957 -37.01778 -34.67292 -34.40151 -33.08214 -31.24353 -30.70910 -29.78068 -28.06472 -27.14442 -25.74501 -24.70326 -24.35750 -23.03082 -22.85497 -21.07200 -18.95433 -18.39987 -17.78877 -17.46857 -17.45703 -16.95844 -16.60428 -15.97170 -15.77582 -15.50634 -15.37035 -15.27453 -15.10233 -14.70678 -14.20975 -13.95285 -13.82563 -13.73666 -13.50852 -13.13525 -12.98915 -12.96791 -12.85589 -12.65663 -12.58105 -12.48173 -12.27889 -12.17248 -12.01188 -11.77724 -11.64789 -11.46944 -11.09947 -10.56742 -10.42778 -10.26953 -9.53563 -9.14969 -8.73144 -8.05483 -6.09678 -0.51422 -0.11909 1.07112 1.42384 1.42986 1.53420 1.94519 2.48083 3.03277 3.12374 3.28617 3.28895 3.54651 3.65346 3.79177 3.82229 3.95297 4.09032 4.12776 4.26737 4.35718 4.41420 4.44813 4.51027 4.53568 4.58452 4.60758 4.70144 4.74547 4.83568 4.83843 4.87547 4.91895 5.04452 5.13172 5.13544 5.17114 5.26159 5.37716 5.46330 5.64449 5.67458 5.72330 5.78947 5.94582 6.21755 6.41941 6.48587 6.77421 7.01754 7.05333 7.55474 9.05555 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.003228 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.585992 B = 8671.929979 C = 9234.730408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.388 6.388 3 C 0.025 3.975 4 C 0.064 3.936 5 N -0.536 5.536 6 C 0.199 3.801 7 C -0.500 4.500 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.930 5.930 11 Si 0.954 3.046 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.270 1.270 15 C 0.088 3.912 16 C -0.070 4.070 17 C -0.081 4.081 18 C -0.109 4.109 19 C 0.108 3.892 20 N -0.509 5.509 21 C 0.142 3.858 22 C -0.103 4.103 23 C -0.172 4.172 24 C -0.058 4.058 25 C -0.119 4.119 26 C -0.091 4.091 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.024 0.976 35 H -0.016 1.016 36 H 0.258 0.742 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.173 0.827 45 H 0.166 0.834 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 24.090 0.014 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C -0.053 4.053 4 C -0.064 4.064 5 N -0.259 5.259 6 C 0.073 3.927 7 C -0.539 4.539 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.780 3.220 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.195 1.195 15 C -0.039 4.039 16 C -0.070 4.070 17 C -0.101 4.101 18 C -0.128 4.128 19 C -0.013 4.013 20 N -0.219 5.219 21 C -0.011 4.011 22 C -0.160 4.160 23 C -0.192 4.192 24 C -0.083 4.083 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.002 0.998 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.190 0.810 45 H 0.183 0.817 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.229 23.776 -0.544 23.814 hybrid contribution -1.398 -1.300 0.848 2.089 sum -2.627 22.476 0.304 22.631 Atomic orbital electron populations 1.22785 0.81704 1.02294 1.00298 1.88402 1.19730 1.27659 1.94940 1.23406 0.95933 0.85408 1.00559 1.22157 0.91193 0.99762 0.93331 1.62198 1.59133 1.03452 1.01095 1.19649 0.95909 0.82763 0.94359 1.21296 1.24591 0.94843 1.13182 0.93129 1.25651 0.95925 0.98812 0.98600 1.70083 1.36183 1.11700 1.39171 0.85624 0.78912 0.77734 0.79722 1.20336 1.21093 1.19454 1.21072 0.96754 0.90798 0.95321 1.19595 0.95496 0.94673 0.97279 1.20911 0.94429 0.96910 0.97845 1.20846 1.00695 0.91243 0.99976 1.19051 0.92858 0.92125 0.97264 1.67878 1.33808 0.99610 1.20605 1.22173 0.92393 0.95799 0.90722 1.20866 1.01539 0.89739 1.03846 1.22071 0.96369 0.99403 1.01339 1.21840 0.99793 0.91527 0.95144 1.18986 0.96599 0.95718 1.00837 1.21007 1.00303 0.91042 0.98703 0.93630 0.91144 0.92746 0.91846 0.92418 0.91747 0.89305 0.95878 0.99761 0.93344 0.93753 0.91250 0.84939 0.84263 0.89238 0.91026 0.87850 0.81001 0.81679 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.39 -16.01 7.57 -148.98 -1.13 -17.14 16 3 C 0.02 0.81 5.16 71.98 0.37 1.19 16 4 C 0.06 2.42 5.17 86.31 0.45 2.87 16 5 N -0.54 -22.85 4.74 -905.38 -4.29 -27.14 16 6 C 0.20 10.53 4.27 85.56 0.37 10.90 16 7 C -0.50 -28.74 8.22 25.60 0.21 -28.53 16 8 H 0.05 2.91 6.97 -2.91 -0.02 2.89 16 9 C 0.01 0.43 5.46 84.65 0.46 0.90 16 10 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 11 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.09 3.10 4.79 85.56 0.41 3.50 16 16 C -0.07 -2.11 4.87 -20.09 -0.10 -2.20 16 17 C -0.08 -2.37 9.58 22.03 0.21 -2.16 16 18 C -0.11 -3.09 9.98 22.34 0.22 -2.86 16 19 C 0.11 3.08 6.60 40.29 0.27 3.35 16 20 N -0.51 -13.73 10.24 -176.75 -1.81 -15.54 16 21 C 0.14 2.84 6.78 42.93 0.29 3.13 16 22 C -0.10 -1.24 10.14 71.24 0.72 -0.51 16 23 C -0.17 -2.75 9.64 22.14 0.21 -2.53 16 24 C -0.06 -1.07 9.90 22.50 0.22 -0.84 16 25 C -0.12 -3.04 5.74 -21.28 -0.12 -3.16 16 26 C -0.09 -2.38 7.70 22.31 0.17 -2.21 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.70 4.43 -2.38 -0.01 1.69 16 32 H 0.06 2.84 6.33 -2.39 -0.02 2.83 16 33 H 0.09 2.94 6.52 -2.39 -0.02 2.92 16 34 H 0.02 1.33 5.29 -2.39 -0.01 1.31 16 35 H -0.02 -0.91 8.05 -2.39 -0.02 -0.93 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.04 1.51 5.65 -2.38 -0.01 1.49 16 38 H 0.07 2.52 7.95 -2.39 -0.02 2.50 16 39 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 44 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 45 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.14 3.12 6.10 -2.91 -0.02 3.10 16 Total: -1.00 -72.53 366.45 1.67 -70.86 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.98 Total: 14.69 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 5.62 Total: -17.14 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -5.82 Total: -99.10 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.13 Total: -17.14 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.53 1.67 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615113811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.134 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds