Wall clock time and date at job start Tue Mar 31 2020 10:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39751 * 120.09752 * 28.98434 * 3 2 1 5 5 C 1.37738 * 119.90681 * 180.02562 * 4 3 2 6 6 C 1.38964 * 120.09446 * 359.97438 * 5 4 3 7 7 O 1.35755 * 119.90510 * 180.02562 * 6 5 4 8 8 C 1.42903 * 116.99699 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.46901 * 180.02562 * 10 9 8 12 12 C 1.46848 * 110.99958 * 294.20187 * 11 10 9 13 13 C 1.53034 * 109.52086 * 174.16220 * 12 11 10 14 14 C 1.53116 * 109.27766 * 59.18490 * 13 12 11 15 15 C 1.50710 * 109.57249 * 182.40496 * 14 13 12 16 16 H 1.08000 * 119.99683 * 119.71591 * 15 14 13 17 17 C 1.37874 * 119.99990 * 299.71110 * 15 14 13 18 18 N 1.31515 * 120.00255 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47232 * 90.00516 * 19 17 15 21 21 H 1.48500 * 109.47052 * 210.00413 * 19 17 15 22 22 H 1.48501 * 109.47298 * 330.00022 * 19 17 15 23 23 C 1.53110 * 109.16138 * 302.34128 * 14 13 12 24 24 C 1.46852 * 110.99971 * 169.99744 * 11 10 9 25 25 C 1.38964 * 120.18684 * 0.27284 * 6 5 4 26 26 C 1.37734 * 120.09810 * 359.44845 * 25 6 5 27 27 H 1.08005 * 120.04770 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.95512 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47382 * 59.99746 * 8 7 6 30 30 H 1.09001 * 109.46938 * 299.99732 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99575 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99748 * 9 8 7 33 33 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 34 34 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 35 35 H 1.09004 * 109.46425 * 294.18123 * 12 11 10 36 36 H 1.09002 * 109.45789 * 54.14490 * 12 11 10 37 37 H 1.08996 * 109.50601 * 299.24170 * 13 12 11 38 38 H 1.09006 * 109.50179 * 179.12409 * 13 12 11 39 39 H 1.08996 * 109.52466 * 62.24942 * 14 13 12 40 40 H 0.96999 * 120.00433 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.50668 * 297.71376 * 23 14 13 42 42 H 1.08999 * 109.50680 * 177.60089 * 23 14 13 43 43 H 1.08999 * 109.46052 * 305.85601 * 24 11 10 44 44 H 1.09001 * 109.46352 * 65.82479 * 24 11 10 45 45 H 1.08005 * 119.95268 * 179.70541 * 25 6 5 46 46 H 1.08001 * 120.04950 * 180.24779 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2692 -1.0567 -0.5859 5 6 4.6466 -1.0523 -0.5832 6 6 5.3389 0.0017 0.0005 7 8 6.6965 0.0024 0.0005 8 6 7.3446 1.1162 0.6181 9 6 8.8615 0.9419 0.5203 10 6 9.5555 2.1341 1.1820 11 7 11.0120 1.9671 1.0876 12 6 11.4615 0.8128 1.8762 13 6 12.9557 0.5822 1.6393 14 6 13.7319 1.8370 2.0485 15 6 15.1984 1.6391 1.7627 16 1 15.7092 2.3001 1.0783 17 6 15.8879 0.6142 2.3752 18 7 15.2658 -0.1911 3.2084 19 14 17.7053 0.3684 2.0204 20 1 18.5096 1.1555 2.9894 21 1 18.0446 -1.0715 2.1497 22 1 18.0065 0.8259 0.6401 23 6 13.2115 3.0335 1.2474 24 6 11.7099 3.1931 1.4956 25 6 4.6455 1.0526 0.5888 26 6 3.2682 1.0591 0.5855 27 1 2.7319 -1.8765 -1.0394 28 1 5.1893 -1.8693 -1.0354 29 1 7.0517 1.1717 1.6665 30 1 7.0513 2.0348 0.1098 31 1 9.1552 0.0233 1.0283 32 1 9.1541 0.8868 -0.5282 33 1 9.2620 3.0530 0.6744 34 1 9.2629 2.1889 2.2306 35 1 11.2871 1.0060 2.9347 36 1 10.9045 -0.0736 1.5725 37 1 13.1290 0.3753 0.5833 38 1 13.2924 -0.2650 2.2367 39 1 13.5901 2.0220 3.1132 40 1 15.7508 -0.9124 3.6390 41 1 13.3888 2.8652 0.1852 42 1 13.7309 3.9377 1.5648 43 1 11.3333 4.0355 0.9154 44 1 11.5344 3.3751 2.5559 45 1 5.1875 1.8676 1.0456 46 1 2.7301 1.8781 1.0393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782089813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:49 Heat of formation + Delta-G solvation = 5.229046 kcal Electronic energy + Delta-G solvation = -24381.561070 eV Core-core repulsion = 20849.898239 eV Total energy + Delta-G solvation = -3531.662831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66968 -38.64724 -38.17535 -36.49875 -34.69009 -32.69944 -31.70234 -31.02619 -30.15694 -29.83607 -26.59763 -24.84988 -23.76813 -23.12379 -22.34714 -21.67749 -20.60194 -19.33839 -18.63693 -18.46878 -16.60358 -16.58035 -16.35458 -15.33747 -15.14515 -14.77157 -14.54937 -14.37768 -14.30167 -14.05088 -13.93756 -13.81830 -13.42773 -12.99180 -12.90299 -12.68002 -12.55244 -12.41481 -12.34010 -11.89788 -11.66766 -11.41265 -11.31592 -11.12160 -10.94658 -10.74612 -10.64563 -10.44386 -10.23155 -9.98751 -9.62797 -9.43384 -8.98018 -8.71315 -8.68315 -8.30014 -7.83072 -5.97884 -4.03123 0.40104 0.79828 2.31292 2.54664 2.70928 3.30871 3.37855 3.41332 3.43188 3.53428 4.23251 4.26265 4.37801 4.45056 4.62287 4.67642 4.81009 4.93431 5.01186 5.08078 5.20589 5.31606 5.35248 5.43060 5.55196 5.59078 5.67862 5.77013 5.82874 5.84103 5.97963 6.06143 6.08159 6.16297 6.22078 6.27848 6.59751 6.60635 6.83183 6.94495 7.05807 7.13492 7.13815 7.41245 7.57975 7.64554 7.81294 8.03730 8.14712 8.47675 9.00540 9.61406 11.08335 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.001797 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.633740 B =15578.748376 C =16026.683056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.261 3.739 3 C -0.080 4.080 4 C -0.029 4.029 5 C -0.156 4.156 6 C 0.169 3.831 7 O -0.305 6.305 8 C 0.059 3.941 9 C -0.117 4.117 10 C 0.059 3.941 11 N -0.535 5.535 12 C 0.054 3.946 13 C -0.105 4.105 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.107 4.107 24 C 0.061 3.939 25 C -0.214 4.214 26 C -0.026 4.026 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.022 0.978 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.020 0.980 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.024 0.976 45 H 0.140 0.860 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.142 1.618 -5.261 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.054 4.054 3 C -0.084 4.084 4 C -0.049 4.049 5 C -0.175 4.175 6 C 0.121 3.879 7 O -0.217 6.217 8 C -0.016 4.016 9 C -0.155 4.155 10 C -0.069 4.069 11 N -0.260 5.260 12 C -0.073 4.073 13 C -0.143 4.143 14 C 0.029 3.971 15 C -0.549 4.549 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.145 4.145 24 C -0.066 4.066 25 C -0.233 4.233 26 C -0.047 4.047 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.158 0.842 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.578 1.239 -5.707 23.321 hybrid contribution 1.167 0.191 0.885 1.477 sum -21.411 1.430 -4.822 21.993 Atomic orbital electron populations 1.81267 1.12120 1.07823 1.09183 1.25667 0.92575 0.93703 0.93457 1.15902 0.84374 0.99167 1.08920 1.20969 0.93087 0.96204 0.94645 1.20411 0.93145 0.99294 1.04604 1.19366 0.83030 0.93420 0.92048 1.86105 1.15651 1.45743 1.74190 1.22964 0.93922 0.87480 0.97271 1.21560 0.90006 1.00188 1.03741 1.21890 0.89676 0.97220 0.98159 1.61961 1.02348 1.05111 1.56580 1.22353 0.99621 0.91550 0.93791 1.21664 0.89189 1.02674 1.00761 1.18687 0.94202 0.89781 0.94470 1.21211 0.94202 1.13542 1.25917 0.92753 1.24963 0.98029 0.95956 0.95051 1.69870 1.35800 1.18037 1.29446 0.86636 0.85732 0.77208 0.78658 1.20825 1.21297 1.19950 1.21681 0.91436 1.00069 1.01278 1.22114 0.96637 0.90640 0.97228 1.21256 0.94736 1.00663 1.06628 1.20954 0.93394 0.96041 0.94261 0.84323 0.83890 0.91639 0.91507 0.90341 0.89774 0.91191 0.95263 0.95972 0.92294 0.93777 0.88946 0.96206 0.93106 0.92427 0.93155 0.92431 0.95796 0.84224 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.77 18.54 41.83 0.78 -3.99 16 2 C 0.26 2.26 15.33 -22.48 -0.34 1.91 16 3 C -0.08 -0.54 5.74 -106.84 -0.61 -1.15 16 4 C -0.03 -0.17 9.75 -39.20 -0.38 -0.55 16 5 C -0.16 -1.04 9.97 -39.50 -0.39 -1.44 16 6 C 0.17 1.33 6.69 -39.04 -0.26 1.07 16 7 O -0.30 -2.86 10.13 -18.97 -0.19 -3.05 16 8 C 0.06 0.48 4.74 37.16 0.18 0.66 16 9 C -0.12 -1.25 5.51 -26.73 -0.15 -1.40 16 10 C 0.06 0.72 4.96 -3.82 -0.02 0.70 16 11 N -0.53 -8.78 4.66 -234.66 -1.09 -9.87 16 12 C 0.05 1.00 5.29 -3.83 -0.02 0.98 16 13 C -0.10 -2.40 5.12 -26.65 -0.14 -2.53 16 14 C 0.05 1.14 2.16 -91.65 -0.20 0.95 16 15 C -0.51 -13.81 8.56 -34.44 -0.29 -14.11 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 18 N -0.89 -25.05 11.37 55.43 0.63 -24.42 16 19 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.11 -2.17 5.32 -26.66 -0.14 -2.31 16 24 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 25 C -0.21 -1.38 9.01 -39.50 -0.36 -1.73 16 26 C -0.03 -0.15 9.75 -39.20 -0.38 -0.54 16 27 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 28 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.07 0.46 7.64 -51.93 -0.40 0.07 16 30 H 0.07 0.44 7.66 -51.93 -0.40 0.05 16 31 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.74 7.99 -51.93 -0.41 0.33 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.99 6.21 -51.93 -0.32 0.67 16 37 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 2.37 6.18 -51.93 -0.32 2.05 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.14 0.69 6.28 -52.48 -0.33 0.36 16 46 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -29.82 375.96 -9.99 -39.80 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -7.12 Total: -3.25 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.63 Total: -16.92 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.31 Total: -38.28 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: -0.19 Total: -3.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.82 -9.99 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782089813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.033 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds