Wall clock time and date at job start Tue Mar 31 2020 10:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39751 * 120.09752 * 28.98434 * 3 2 1 5 5 C 1.37738 * 119.90681 * 180.02562 * 4 3 2 6 6 C 1.38964 * 120.09446 * 359.97438 * 5 4 3 7 7 O 1.35755 * 119.90510 * 180.02562 * 6 5 4 8 8 C 1.42903 * 116.99699 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 N 1.46902 * 109.46901 * 180.02562 * 10 9 8 12 12 C 1.46848 * 110.99958 * 294.20187 * 11 10 9 13 13 C 1.53034 * 109.52086 * 174.16220 * 12 11 10 14 14 C 1.53116 * 109.27766 * 59.18490 * 13 12 11 15 15 C 1.50710 * 109.57249 * 182.40496 * 14 13 12 16 16 H 1.08000 * 119.99683 * 119.71591 * 15 14 13 17 17 C 1.37874 * 119.99990 * 299.71110 * 15 14 13 18 18 N 1.31515 * 120.00255 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99780 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47232 * 90.00516 * 19 17 15 21 21 H 1.48500 * 109.47052 * 210.00413 * 19 17 15 22 22 H 1.48501 * 109.47298 * 330.00022 * 19 17 15 23 23 C 1.53110 * 109.16138 * 302.34128 * 14 13 12 24 24 C 1.46852 * 110.99971 * 169.99744 * 11 10 9 25 25 C 1.38964 * 120.18684 * 0.27284 * 6 5 4 26 26 C 1.37734 * 120.09810 * 359.44845 * 25 6 5 27 27 H 1.08005 * 120.04770 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.95512 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47382 * 59.99746 * 8 7 6 30 30 H 1.09001 * 109.46938 * 299.99732 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99575 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99748 * 9 8 7 33 33 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 34 34 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 35 35 H 1.09004 * 109.46425 * 294.18123 * 12 11 10 36 36 H 1.09002 * 109.45789 * 54.14490 * 12 11 10 37 37 H 1.08996 * 109.50601 * 299.24170 * 13 12 11 38 38 H 1.09006 * 109.50179 * 179.12409 * 13 12 11 39 39 H 1.08996 * 109.52466 * 62.24942 * 14 13 12 40 40 H 0.96999 * 120.00433 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.50668 * 297.71376 * 23 14 13 42 42 H 1.08999 * 109.50680 * 177.60089 * 23 14 13 43 43 H 1.08999 * 109.46052 * 305.85601 * 24 11 10 44 44 H 1.09001 * 109.46352 * 65.82479 * 24 11 10 45 45 H 1.08005 * 119.95268 * 179.70541 * 25 6 5 46 46 H 1.08001 * 120.04950 * 180.24779 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2692 -1.0567 -0.5859 5 6 4.6466 -1.0523 -0.5832 6 6 5.3389 0.0017 0.0005 7 8 6.6965 0.0024 0.0005 8 6 7.3446 1.1162 0.6181 9 6 8.8615 0.9419 0.5203 10 6 9.5555 2.1341 1.1820 11 7 11.0120 1.9671 1.0876 12 6 11.4615 0.8128 1.8762 13 6 12.9557 0.5822 1.6393 14 6 13.7319 1.8370 2.0485 15 6 15.1984 1.6391 1.7627 16 1 15.7092 2.3001 1.0783 17 6 15.8879 0.6142 2.3752 18 7 15.2658 -0.1911 3.2084 19 14 17.7053 0.3684 2.0204 20 1 18.5096 1.1555 2.9894 21 1 18.0446 -1.0715 2.1497 22 1 18.0065 0.8259 0.6401 23 6 13.2115 3.0335 1.2474 24 6 11.7099 3.1931 1.4956 25 6 4.6455 1.0526 0.5888 26 6 3.2682 1.0591 0.5855 27 1 2.7319 -1.8765 -1.0394 28 1 5.1893 -1.8693 -1.0354 29 1 7.0517 1.1717 1.6665 30 1 7.0513 2.0348 0.1098 31 1 9.1552 0.0233 1.0283 32 1 9.1541 0.8868 -0.5282 33 1 9.2620 3.0530 0.6744 34 1 9.2629 2.1889 2.2306 35 1 11.2871 1.0060 2.9347 36 1 10.9045 -0.0736 1.5725 37 1 13.1290 0.3753 0.5833 38 1 13.2924 -0.2650 2.2367 39 1 13.5901 2.0220 3.1132 40 1 15.7508 -0.9124 3.6390 41 1 13.3888 2.8652 0.1852 42 1 13.7309 3.9377 1.5648 43 1 11.3333 4.0355 0.9154 44 1 11.5344 3.3751 2.5559 45 1 5.1875 1.8676 1.0456 46 1 2.7301 1.8781 1.0393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782089813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:48 Heat of formation + Delta-G solvation = -10.569448 kcal Electronic energy + Delta-G solvation = -24382.246144 eV Core-core repulsion = 20849.898239 eV Total energy + Delta-G solvation = -3532.347905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21434 -39.88626 -38.95685 -37.21314 -36.16612 -34.19068 -32.43001 -31.98821 -31.43466 -31.03079 -28.03384 -26.11726 -24.30383 -24.21374 -23.70151 -22.91314 -21.65088 -20.32632 -19.87005 -19.07363 -18.41829 -17.25410 -17.23548 -16.70071 -16.23390 -15.83799 -15.62641 -15.27754 -15.06869 -14.94815 -14.86382 -14.59657 -14.48460 -14.38280 -14.25988 -14.03203 -13.64521 -13.26379 -13.15963 -13.05720 -12.85983 -12.79923 -12.56317 -12.41310 -12.18303 -12.11019 -11.92729 -11.81200 -11.69452 -11.51516 -11.23370 -10.76966 -10.59164 -10.35058 -10.07481 -9.23490 -9.13863 -8.06274 -6.19358 -0.13629 0.35357 1.41812 1.43085 1.52986 1.64823 1.94389 2.10693 2.45241 2.89872 2.93342 3.13675 3.20956 3.78393 3.89526 3.96345 4.11150 4.14331 4.20330 4.30236 4.38638 4.39195 4.46571 4.51521 4.57968 4.61246 4.67279 4.74902 4.82095 4.92844 5.00156 5.01418 5.06952 5.09087 5.22320 5.24279 5.28328 5.34007 5.36695 5.40312 5.60016 5.64374 5.65703 6.03750 6.06478 6.32930 6.37165 6.42343 6.43852 6.49693 6.92653 7.48432 8.98115 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.037695 B = 0.001797 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.633740 B =15578.748376 C =16026.683056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.285 3.715 3 C -0.089 4.089 4 C -0.022 4.022 5 C -0.164 4.164 6 C 0.154 3.846 7 O -0.324 6.324 8 C 0.062 3.938 9 C -0.112 4.112 10 C 0.060 3.940 11 N -0.544 5.544 12 C 0.068 3.932 13 C -0.097 4.097 14 C 0.042 3.958 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.951 3.049 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.101 4.101 24 C 0.067 3.933 25 C -0.214 4.214 26 C -0.021 4.021 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.059 0.941 39 H -0.013 1.013 40 H 0.259 0.741 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.022 0.978 45 H 0.157 0.843 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.189 2.693 -5.899 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.028 4.028 3 C -0.093 4.093 4 C -0.042 4.042 5 C -0.182 4.182 6 C 0.107 3.893 7 O -0.237 6.237 8 C -0.013 4.013 9 C -0.150 4.150 10 C -0.067 4.067 11 N -0.269 5.269 12 C -0.060 4.060 13 C -0.135 4.135 14 C 0.024 3.976 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.139 4.139 24 C -0.060 4.060 25 C -0.232 4.232 26 C -0.042 4.042 27 H 0.174 0.826 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.041 0.959 45 H 0.175 0.825 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.639 2.325 -6.351 24.587 hybrid contribution 1.520 -0.151 1.075 1.868 sum -22.119 2.175 -5.276 22.843 Atomic orbital electron populations 1.81292 1.13530 1.09487 1.11044 1.25877 0.92702 0.92258 0.92012 1.16007 0.83330 1.00072 1.09908 1.21140 0.92836 0.96341 0.93906 1.20569 0.93444 0.99470 1.04731 1.19602 0.82544 0.94321 0.92838 1.86060 1.16582 1.46384 1.74678 1.22917 0.91955 0.87991 0.98396 1.21433 0.92038 0.98846 1.02637 1.21988 0.86529 0.98935 0.99262 1.61890 1.05182 1.04030 1.55848 1.22067 0.96619 0.93576 0.93736 1.21421 0.92430 1.00803 0.98850 1.18676 0.93542 0.92265 0.93145 1.21612 0.95986 1.13636 1.25924 0.93163 1.25723 1.02164 0.95760 0.94951 1.70011 1.37229 1.18353 1.30119 0.85659 0.80798 0.77149 0.78663 1.20241 1.20954 1.19388 1.21551 0.94314 0.98180 0.99877 1.22041 0.94194 0.91955 0.97844 1.21427 0.94838 1.00688 1.06262 1.21165 0.93375 0.96124 0.93523 0.82575 0.83248 0.90293 0.89423 0.92020 0.90754 0.88618 0.94370 0.96793 0.90679 0.95206 0.92281 0.99450 0.93143 0.93089 0.92890 0.88975 0.95944 0.82515 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.38 18.54 19.00 0.35 -10.03 16 2 C 0.29 4.59 15.33 88.33 1.35 5.95 16 3 C -0.09 -1.03 5.74 -21.30 -0.12 -1.15 16 4 C -0.02 -0.22 9.75 22.52 0.22 0.00 16 5 C -0.16 -1.90 9.97 22.33 0.22 -1.68 16 6 C 0.15 2.09 6.69 22.62 0.15 2.24 16 7 O -0.32 -5.43 10.13 -90.81 -0.92 -6.35 16 8 C 0.06 0.83 4.74 71.98 0.34 1.17 16 9 C -0.11 -2.14 5.51 30.59 0.17 -1.97 16 10 C 0.06 1.28 4.96 86.30 0.43 1.70 16 11 N -0.54 -16.88 4.66 -896.34 -4.17 -21.05 16 12 C 0.07 2.49 5.29 86.32 0.46 2.95 16 13 C -0.10 -4.56 5.12 30.64 0.16 -4.40 16 14 C 0.04 2.11 2.16 -11.46 -0.02 2.09 16 15 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 16 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 17 C 0.01 0.69 5.31 84.65 0.45 1.14 16 18 N -0.92 -52.97 11.37 21.45 0.24 -52.72 16 19 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C -0.10 -4.08 5.32 30.64 0.16 -3.92 16 24 C 0.07 2.14 5.46 86.32 0.47 2.61 16 25 C -0.21 -2.13 9.01 22.32 0.20 -1.93 16 26 C -0.02 -0.20 9.75 22.52 0.22 0.02 16 27 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 28 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.08 0.85 7.64 -2.39 -0.02 0.83 16 30 H 0.09 0.81 7.66 -2.39 -0.02 0.80 16 31 H 0.06 1.38 6.43 -2.39 -0.02 1.37 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.59 7.99 -2.39 -0.02 1.57 16 34 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.07 2.50 6.21 -2.39 -0.01 2.49 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 3.16 6.18 -2.38 -0.01 3.15 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.34 8.01 -2.39 -0.02 2.32 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 45 H 0.16 0.97 6.28 -2.91 -0.02 0.95 16 46 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -66.50 375.96 3.57 -62.93 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.96 Total: 6.05 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 5.08 Total: -24.56 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.58 Total: -83.80 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.92 Total: -6.35 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.50 3.57 -62.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782089813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.362 kcal (2) G-P(sol) polarization free energy of solvation -66.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds