Wall clock time and date at job start Tue Mar 31 2020 11:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86796 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46924 * 239.99791 * 3 2 1 5 5 H 1.48497 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47220 * 120.00296 * 3 2 1 7 7 C 1.39003 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00384 * 189.87667 * 7 2 1 9 9 N 1.36959 * 119.99807 * 9.88438 * 7 2 1 10 10 C 1.34776 * 119.99699 * 190.52636 * 9 7 2 11 11 O 1.21647 * 119.99843 * 185.97266 * 10 9 7 12 12 C 1.46902 * 120.00207 * 5.97288 * 10 9 7 13 13 C 1.33156 * 119.99854 * 186.05402 * 12 10 9 14 14 C 1.50700 * 119.99864 * 20.82675 * 13 12 10 15 15 C 1.54244 * 108.89447 * 248.56724 * 14 13 12 16 16 C 1.50475 * 108.52217 * 159.26995 * 15 14 13 17 17 C 1.54065 * 112.50079 * 94.15517 * 16 15 14 18 18 C 1.54067 * 112.81490 * 318.27855 * 17 16 15 19 19 C 1.50478 * 112.49432 * 318.28596 * 18 17 16 20 20 C 1.45548 * 108.89415 * 125.68868 * 14 13 12 21 21 C 1.39331 * 119.99953 * 10.52411 * 9 7 2 22 22 C 1.39089 * 119.70286 * 262.69074 * 21 9 7 23 23 C 1.38374 * 119.09874 * 179.77067 * 22 21 9 24 24 C 1.38828 * 118.49276 * 0.51473 * 23 22 21 25 25 C 1.38151 * 119.31338 * 359.46526 * 24 23 22 26 26 N 1.31871 * 120.85702 * 0.29674 * 25 24 23 27 27 H 0.96995 * 119.99817 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99918 * 6.04656 * 12 10 9 29 29 H 1.07998 * 119.99709 * 200.82987 * 13 12 10 30 30 H 1.08994 * 108.87825 * 7.08092 * 14 13 12 31 31 H 1.09006 * 109.63159 * 278.97688 * 15 14 13 32 32 H 1.09000 * 109.62817 * 39.55393 * 15 14 13 33 33 H 1.09001 * 108.87692 * 333.36681 * 16 15 14 34 34 H 1.09006 * 108.87321 * 214.93315 * 16 15 14 35 35 H 1.09006 * 108.81017 * 197.42177 * 17 16 15 36 36 H 1.08995 * 108.73027 * 79.08463 * 17 16 15 37 37 H 1.08997 * 108.87798 * 197.51086 * 18 17 16 38 38 H 1.09001 * 108.79641 * 79.01227 * 18 17 16 39 39 H 1.08995 * 109.63220 * 334.44869 * 19 18 17 40 40 H 1.08998 * 109.62719 * 213.85983 * 19 18 17 41 41 H 1.08994 * 108.88821 * 303.44331 * 20 14 13 42 42 H 1.09004 * 108.89154 * 61.92852 * 20 14 13 43 43 H 1.08000 * 120.44748 * 0.02562 * 22 21 9 44 44 H 1.07995 * 120.75088 * 180.27939 * 23 22 21 45 45 H 1.08001 * 120.33870 * 179.73426 * 24 23 22 46 46 H 1.08005 * 119.56772 * 180.27358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1014 1.6963 -1.2125 5 1 1.2826 2.7464 -0.0006 6 1 3.1014 1.6963 1.2124 7 6 2.0086 -1.2038 0.0005 8 1 3.0766 -1.2107 0.1610 9 7 1.3390 -2.3812 -0.2025 10 6 1.9644 -3.5567 0.0064 11 8 1.4077 -4.6005 -0.2770 12 6 3.3182 -3.5774 0.5762 13 6 3.9831 -4.7272 0.6709 14 6 3.5919 -5.8973 -0.1944 15 6 2.9853 -6.9985 0.6992 16 6 2.1518 -7.9081 -0.1624 17 6 2.9379 -9.1388 -0.6534 18 6 4.3731 -8.7938 -1.0949 19 6 4.4402 -7.5165 -1.8877 20 6 4.7648 -6.3576 -0.9230 21 6 0.0115 -2.3637 -0.6251 22 6 -1.0107 -2.4990 0.3084 23 6 -2.3248 -2.4751 -0.1244 24 6 -2.5722 -2.3269 -1.4824 25 6 -1.5079 -2.1974 -2.3536 26 7 -0.2656 -2.2189 -1.9117 27 1 -0.4849 0.8400 -0.0004 28 1 3.7742 -2.6601 0.9182 29 1 4.8027 -4.8211 1.3679 30 1 2.8377 -5.5701 -0.9100 31 1 3.7852 -7.5709 1.1689 32 1 2.3578 -6.5438 1.4657 33 1 1.7977 -7.3475 -1.0276 34 1 1.2900 -8.2465 0.4128 35 1 2.4075 -9.5811 -1.4967 36 1 2.9845 -9.8693 0.1541 37 1 4.7595 -9.6091 -1.7065 38 1 4.9984 -8.6917 -0.2080 39 1 3.4798 -7.3337 -2.3696 40 1 5.2228 -7.5947 -2.6424 41 1 5.1735 -5.5253 -1.4958 42 1 5.5154 -6.6936 -0.2075 43 1 -0.7819 -2.6171 1.3573 44 1 -3.1394 -2.5734 0.5779 45 1 -3.5864 -2.3086 -1.8533 46 1 -1.6958 -2.0774 -3.4104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892473125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:19 Heat of formation + Delta-G solvation = 26.226606 kcal Electronic energy + Delta-G solvation = -26909.152469 eV Core-core repulsion = 23378.400160 eV Total energy + Delta-G solvation = -3530.752309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79297 -38.95207 -37.67907 -35.05550 -33.66106 -31.82107 -31.72737 -31.28930 -30.46703 -29.07562 -25.12736 -24.83031 -24.34077 -22.97980 -22.41931 -20.75854 -20.06411 -18.98852 -18.91171 -17.56814 -16.48133 -15.61514 -15.44024 -15.23866 -14.79818 -14.56123 -14.38674 -14.16300 -13.66457 -13.42252 -13.34243 -13.06321 -12.67728 -12.51860 -12.40262 -12.20129 -12.00390 -11.85438 -11.67852 -11.51043 -11.20438 -11.11345 -10.62147 -10.58822 -10.54826 -10.49951 -10.23015 -10.06808 -9.96576 -9.84413 -9.55886 -8.80785 -8.62999 -8.49524 -8.17848 -8.01280 -7.83299 -6.31729 -4.05043 2.10692 2.28815 2.44420 3.10654 3.16436 3.17658 3.97083 4.22733 4.48156 4.86131 4.91242 4.99335 5.07848 5.12315 5.40613 5.46430 5.49851 5.59569 5.64048 5.68513 5.71091 5.80090 5.83100 5.93081 6.00065 6.07666 6.16822 6.23395 6.26981 6.28320 6.36059 6.43469 6.44497 6.45951 6.53014 6.58540 6.72065 6.79061 6.88833 6.95941 7.05767 7.12245 7.13222 7.26955 7.34707 7.50881 7.78444 8.35244 8.94990 9.14647 9.35728 9.75129 10.54683 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004441 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.983823 B = 6303.556640 C = 7547.918453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.931 3.069 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.496 3.504 11 O -0.584 6.584 12 C -0.174 4.174 13 C -0.104 4.104 14 C -0.080 4.080 15 C -0.088 4.088 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.104 4.104 21 C 0.457 3.543 22 C -0.114 4.114 23 C -0.080 4.080 24 C -0.205 4.205 25 C 0.104 3.896 26 N -0.495 5.495 27 H 0.274 0.726 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -9.009 0.455 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.457 4.457 8 H 0.126 0.874 9 N -0.118 5.118 10 C 0.289 3.711 11 O -0.470 6.470 12 C -0.195 4.195 13 C -0.124 4.124 14 C -0.098 4.098 15 C -0.125 4.125 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.142 4.142 21 C 0.230 3.770 22 C -0.136 4.136 23 C -0.107 4.107 24 C -0.226 4.226 25 C -0.053 4.053 26 N -0.207 5.207 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.754 -9.225 -0.275 9.964 hybrid contribution -0.332 1.306 0.708 1.522 sum 3.422 -7.919 0.434 8.638 Atomic orbital electron populations 1.69659 1.05857 1.27886 1.46501 1.25303 0.95622 0.99997 0.95838 0.85919 0.78946 0.80386 0.79026 1.19689 1.20819 1.19684 1.19691 0.93470 0.82256 1.50332 0.87421 1.41133 1.08542 1.06282 1.55822 1.18218 0.87493 0.82592 0.82838 1.90594 1.68157 1.31372 1.56875 1.22719 0.94778 0.98330 1.03631 1.23500 0.98384 0.94489 0.96066 1.19702 0.98798 0.93447 0.97855 1.21078 0.98335 0.95462 0.97647 1.21259 0.97768 0.95713 1.00372 1.21940 0.95552 0.97922 0.99951 1.21320 0.96927 0.97337 0.99657 1.21300 1.01787 0.94629 0.97657 1.20488 0.98039 0.97751 0.97912 1.17514 0.84997 0.87257 0.87207 1.21507 0.92630 1.00016 0.99496 1.21060 0.95941 0.98318 0.95358 1.21675 0.99349 1.07012 0.94540 1.22100 0.87555 0.96855 0.98823 1.67175 1.22569 1.13360 1.17602 0.91449 0.85624 0.87272 0.86554 0.93239 0.92059 0.91351 0.93088 0.92874 0.93000 0.93069 0.92294 0.91408 0.92502 0.92664 0.93009 0.86865 0.86619 0.86710 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.44 9.96 55.50 0.55 -21.89 16 2 C 0.04 0.95 5.35 -17.47 -0.09 0.86 16 3 Si 0.93 19.61 29.56 -169.99 -5.03 14.59 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.33 -8.38 9.24 -14.98 -0.14 -8.52 16 8 H 0.11 2.51 5.90 -52.49 -0.31 2.20 16 9 N -0.40 -10.30 2.73 -62.02 -0.17 -10.47 16 10 C 0.50 11.86 7.27 -12.75 -0.09 11.77 16 11 O -0.58 -14.56 13.27 5.24 0.07 -14.49 16 12 C -0.17 -3.44 9.18 -37.85 -0.35 -3.79 16 13 C -0.10 -1.74 8.54 -36.08 -0.31 -2.05 16 14 C -0.08 -1.33 1.23 -94.63 -0.12 -1.44 16 15 C -0.09 -1.35 4.68 -27.34 -0.13 -1.48 16 16 C -0.11 -1.69 5.31 -27.44 -0.15 -1.83 16 17 C -0.12 -1.41 5.85 -25.62 -0.15 -1.56 16 18 C -0.11 -1.32 5.32 -27.43 -0.15 -1.47 16 19 C -0.12 -1.48 5.61 -27.34 -0.15 -1.63 16 20 C -0.10 -1.46 4.43 -29.60 -0.13 -1.59 16 21 C 0.46 11.72 3.07 -154.71 -0.47 11.24 16 22 C -0.11 -2.70 8.70 -39.22 -0.34 -3.04 16 23 C -0.08 -1.62 10.17 -39.31 -0.40 -2.02 16 24 C -0.21 -3.94 10.11 -39.40 -0.40 -4.33 16 25 C 0.10 2.22 11.18 -17.57 -0.20 2.02 16 26 N -0.49 -12.57 10.38 -12.35 -0.13 -12.70 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 28 H 0.13 2.35 6.29 -52.49 -0.33 2.02 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 2.38 4.48 -51.93 -0.23 2.15 16 31 H 0.05 0.67 6.97 -51.93 -0.36 0.31 16 32 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 33 H 0.07 1.17 6.63 -51.93 -0.34 0.83 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 39 H 0.07 0.96 6.98 -51.93 -0.36 0.60 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.05 0.65 7.47 -51.93 -0.39 0.26 16 43 H 0.11 2.64 8.06 -52.49 -0.42 2.22 16 44 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 45 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 46 H 0.14 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -29.14 359.17 -9.92 -39.06 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.87 Total: 9.34 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.76 Total: -8.85 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.26 Total: -45.06 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.07 Total: -14.49 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.14 -9.92 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.284 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds