Wall clock time and date at job start Tue Mar 31 2020 11:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99946 * 2 1 4 4 C 1.38209 * 119.99862 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99997 * 359.81158 * 4 3 2 6 6 C 1.38208 * 120.00123 * 0.41863 * 5 4 3 7 7 C 1.50705 * 120.00320 * 179.80989 * 6 5 4 8 8 C 1.50696 * 115.54947 * 149.86889 * 7 6 5 9 9 O 1.21282 * 119.99946 * 100.20595 * 8 7 6 10 10 N 1.34776 * 119.99803 * 280.20780 * 8 7 6 11 11 C 1.47022 * 125.65088 * 355.07732 * 10 8 7 12 12 C 1.54317 * 107.27082 * 181.09714 * 11 10 8 13 13 C 1.55159 * 102.94594 * 22.19512 * 12 11 10 14 14 H 1.09000 * 111.00140 * 82.56750 * 13 12 11 15 15 N 1.46500 * 111.03963 * 206.41120 * 13 12 11 16 16 C 1.36938 * 119.99556 * 270.39689 * 15 13 12 17 17 H 1.08001 * 120.00128 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00041 * 180.02562 * 16 15 13 19 19 N 1.31622 * 119.99908 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00574 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46838 * 59.99518 * 20 18 16 22 22 H 1.48492 * 109.47353 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46836 * 300.00015 * 20 18 16 24 24 C 1.47431 * 125.64671 * 175.12717 * 10 8 7 25 25 C 1.52998 * 117.51406 * 295.56965 * 7 6 5 26 26 C 1.52992 * 60.00018 * 107.47958 * 25 7 6 27 27 C 1.38207 * 119.99967 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47524 * 270.02392 * 1 2 3 29 29 H 1.09007 * 109.46865 * 30.02681 * 1 2 3 30 30 H 1.09003 * 109.47116 * 150.02021 * 1 2 3 31 31 H 1.07998 * 120.00331 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.00245 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00204 * 180.23399 * 5 4 3 34 34 H 1.09001 * 109.88048 * 300.51343 * 11 10 8 35 35 H 1.08997 * 109.88032 * 61.52504 * 11 10 8 36 36 H 1.09004 * 110.72329 * 263.83242 * 12 11 10 37 37 H 1.08999 * 110.71921 * 140.55881 * 12 11 10 38 38 H 0.96996 * 120.00473 * 90.38806 * 15 13 12 39 39 H 0.96997 * 120.00297 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.36763 * 36.98773 * 24 10 8 41 41 H 1.09008 * 110.45663 * 274.71584 * 24 10 8 42 42 H 1.09011 * 117.49737 * 214.97057 * 25 7 6 43 43 H 1.08999 * 117.50267 * 359.97438 * 25 7 6 44 44 H 1.09001 * 117.49739 * 252.50931 * 26 25 7 45 45 H 1.09002 * 117.52084 * 107.47987 * 26 25 7 46 46 H 1.08007 * 120.00190 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0050 6 6 3.5807 -1.1969 0.0002 7 6 4.3341 -2.5021 0.0007 8 6 3.6381 -3.6541 0.6785 9 8 3.0563 -4.4861 0.0151 10 7 3.6622 -3.7597 2.0219 11 6 4.4105 -2.8856 2.9369 12 6 4.1604 -3.4008 4.3699 13 6 3.7418 -4.8771 4.1403 14 1 4.6161 -5.5167 4.0190 15 7 2.8900 -5.3580 5.2309 16 6 3.4543 -5.9399 6.3346 17 1 4.5271 -6.0447 6.4009 18 6 2.6473 -6.3960 7.3678 19 7 1.3397 -6.2688 7.2868 20 14 3.4168 -7.1905 8.8732 21 1 4.3297 -6.2220 9.5318 22 1 2.3478 -7.5879 9.8242 23 1 4.1847 -8.3926 8.4604 24 6 2.9431 -4.7717 2.8172 25 6 5.1994 -2.8192 -1.2205 26 6 5.8591 -2.4373 0.1060 27 6 2.1981 -1.1969 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6584 2.1327 -0.0004 32 1 4.1205 2.1327 0.0010 33 1 5.3517 0.0000 0.0092 34 1 5.4749 -2.9323 2.7067 35 1 4.0556 -1.8593 2.8423 36 1 3.3552 -2.8413 4.8459 37 1 5.0727 -3.3466 4.9639 38 1 1.9265 -5.2641 5.1713 39 1 0.7758 -6.5872 8.0089 40 1 2.9404 -5.7302 2.2982 41 1 1.9221 -4.4455 3.0154 42 1 5.2653 -3.8612 -1.5338 43 1 5.2235 -2.0840 -2.0249 44 1 6.3174 -1.4507 0.1745 45 1 6.3590 -3.2278 0.6658 46 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970802117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:27 Heat of formation + Delta-G solvation = 12.026202 kcal Electronic energy + Delta-G solvation = -26137.462281 eV Core-core repulsion = 22606.094197 eV Total energy + Delta-G solvation = -3531.368084 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77947 -40.19978 -38.86311 -37.51296 -35.94284 -33.44092 -33.29132 -31.80288 -31.05969 -29.54986 -27.82800 -26.38648 -25.19072 -24.10607 -23.55690 -23.00262 -21.73843 -21.51657 -19.75658 -19.32372 -18.30614 -17.67663 -17.39146 -16.76602 -16.39196 -16.15276 -15.72095 -15.56433 -15.27837 -14.98724 -14.75614 -14.67869 -14.45471 -14.15694 -14.03119 -13.55515 -13.38440 -13.21398 -13.15872 -13.10604 -13.02190 -12.68944 -12.55525 -12.39766 -12.25686 -12.16859 -11.99399 -11.80380 -11.69764 -11.58913 -11.53327 -10.95001 -10.85571 -9.75723 -9.70096 -9.44719 -9.07407 -7.95929 -5.26879 0.35652 0.44810 1.42536 1.48835 1.51884 1.57778 1.80197 2.54956 2.56817 2.98902 3.30322 3.41214 3.43622 3.67313 3.78253 3.86459 3.92283 4.00963 4.02979 4.06180 4.21401 4.21682 4.28184 4.40842 4.46085 4.47343 4.64203 4.66739 4.72003 4.73854 4.80072 4.82345 4.91155 4.94753 4.95662 5.09382 5.13865 5.17100 5.20317 5.26278 5.38406 5.51814 5.56443 5.60931 5.68738 6.09136 6.24036 6.44860 7.00291 7.30837 8.01231 8.26009 9.27269 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017293 B = 0.003159 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.733458 B = 8860.374315 C = 9438.923703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.040 4.040 7 C -0.133 4.133 8 C 0.562 3.438 9 O -0.587 6.587 10 N -0.603 5.603 11 C 0.114 3.886 12 C -0.143 4.143 13 C 0.169 3.831 14 H 0.065 0.935 15 N -0.729 5.729 16 C -0.243 4.243 17 H 0.082 0.918 18 C -0.073 4.073 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.278 1.278 24 C 0.105 3.895 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.373 0.627 39 H 0.251 0.749 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.141 0.859 45 H 0.105 0.895 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 18.770 -17.019 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.126 4.126 5 C -0.137 4.137 6 C -0.041 4.041 7 C -0.136 4.136 8 C 0.352 3.648 9 O -0.468 6.468 10 N -0.336 5.336 11 C -0.008 4.008 12 C -0.184 4.184 13 C 0.059 3.941 14 H 0.083 0.917 15 N -0.368 5.368 16 C -0.375 4.375 17 H 0.100 0.900 18 C -0.265 4.265 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.205 1.205 24 C -0.019 4.019 25 C -0.172 4.172 26 C -0.170 4.170 27 C -0.157 4.157 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.142 0.858 44 H 0.159 0.841 45 H 0.124 0.876 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.313 18.252 -17.307 26.821 hybrid contribution -0.965 -1.149 1.000 1.803 sum 8.347 17.102 -16.308 25.062 Atomic orbital electron populations 1.20840 0.90483 1.03312 1.02665 1.20121 0.96997 0.93014 0.99219 1.21362 0.95100 0.97488 1.00595 1.21489 0.94070 0.98833 0.98192 1.21241 1.01299 0.90632 1.00567 1.18708 0.92429 0.92147 1.00801 1.19936 0.94704 0.92337 1.06581 1.19666 0.79461 0.85443 0.80225 1.90665 1.47023 1.44423 1.64645 1.48408 1.48080 1.32015 1.05049 1.22152 0.97081 0.93648 0.87948 1.23220 1.02519 0.97540 0.95128 1.21411 0.92956 0.94102 0.85647 0.91657 1.42404 1.05348 1.71263 1.17794 1.19592 0.92412 1.30109 0.95376 0.89976 1.25595 0.95822 1.03089 1.02018 1.69822 1.03872 1.53874 1.34459 0.85189 0.76842 0.78557 0.79018 1.19944 1.22477 1.20453 1.22275 0.95708 0.91718 0.92168 1.23172 0.98813 1.03432 0.91782 1.23424 0.88914 1.05657 0.99035 1.20863 0.94414 0.97425 1.02975 0.91115 0.89390 0.92470 0.83823 0.82675 0.82894 0.88663 0.90681 0.92178 0.89220 0.79464 0.93981 0.92180 0.92821 0.89065 0.85761 0.84115 0.87640 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 10.01 71.24 0.71 -1.46 16 2 C -0.09 -2.04 5.88 -19.87 -0.12 -2.16 16 3 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 4 C -0.11 -1.52 10.05 22.27 0.22 -1.30 16 5 C -0.12 -1.88 9.36 22.27 0.21 -1.67 16 6 C -0.04 -0.90 5.48 -19.86 -0.11 -1.01 16 7 C -0.13 -3.08 1.70 -53.68 -0.09 -3.17 16 8 C 0.56 18.38 5.84 87.66 0.51 18.89 16 9 O -0.59 -24.22 17.23 -3.04 -0.05 -24.27 16 10 N -0.60 -19.22 3.33 -811.80 -2.70 -21.92 16 11 C 0.11 2.90 6.21 86.73 0.54 3.44 16 12 C -0.14 -4.54 6.65 31.78 0.21 -4.32 16 13 C 0.17 6.59 3.70 46.38 0.17 6.76 16 14 H 0.07 2.55 8.11 -2.39 -0.02 2.53 16 15 N -0.73 -36.35 5.26 -316.38 -1.67 -38.01 16 16 C -0.24 -13.16 9.97 84.03 0.84 -12.32 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 19 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 20 Si 0.98 45.28 29.55 68.60 2.03 47.31 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.11 3.99 6.57 86.85 0.57 4.56 16 25 C -0.13 -2.50 9.83 30.59 0.30 -2.20 16 26 C -0.13 -2.00 8.51 30.59 0.26 -1.74 16 27 C -0.14 -3.68 8.97 22.27 0.20 -3.48 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.21 8.09 -2.38 -0.02 1.19 16 30 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.15 1.44 5.95 -2.91 -0.02 1.43 16 34 H 0.10 1.88 7.06 -2.39 -0.02 1.87 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.37 20.31 7.73 -92.71 -0.72 19.59 16 39 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 41 H 0.05 2.17 8.00 -2.38 -0.02 2.15 16 42 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 43 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.14 1.18 6.10 -2.39 -0.01 1.17 16 45 H 0.11 1.59 7.76 -2.39 -0.02 1.57 16 46 H 0.09 2.82 7.34 -2.91 -0.02 2.79 16 Total: -1.00 -71.88 376.98 3.27 -68.61 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.26 Total: 33.85 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.11 Total: -6.75 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -4.08 Total: -118.74 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.88 3.27 -68.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970802117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.635 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds