Wall clock time and date at job start Tue Mar 31 2020 11:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48500 * 109.47516 * 270.00197 * 3 2 1 5 5 H 1.48502 * 109.47091 * 30.00340 * 3 2 1 6 6 H 1.48506 * 109.47000 * 150.00167 * 3 2 1 7 7 C 1.38814 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99760 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99697 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47172 * 325.00093 * 10 9 7 12 12 C 1.53003 * 109.47068 * 85.00275 * 10 9 7 13 13 C 1.52999 * 109.47337 * 59.99453 * 12 10 9 14 14 C 1.53001 * 109.46847 * 60.00156 * 13 12 10 15 15 C 1.52996 * 109.47229 * 300.00206 * 14 13 12 16 16 H 1.08999 * 109.47290 * 299.99725 * 15 14 13 17 17 N 1.46508 * 109.47086 * 180.02562 * 15 14 13 18 18 C 1.34770 * 119.99802 * 84.99796 * 17 15 14 19 19 O 1.21282 * 120.00175 * 359.97438 * 18 17 15 20 20 C 1.50697 * 119.99846 * 179.97438 * 18 17 15 21 21 F 1.39901 * 109.54541 * 310.17972 * 20 18 17 22 22 C 1.53181 * 109.54628 * 189.99653 * 20 18 17 23 23 C 1.53090 * 109.16481 * 183.06170 * 22 20 18 24 24 O 1.42905 * 109.41466 * 57.61337 * 23 22 20 25 25 C 1.42905 * 114.09831 * 298.84306 * 24 23 22 26 26 C 1.53087 * 109.41504 * 61.15479 * 25 24 23 27 27 C 1.52999 * 109.47373 * 60.00116 * 15 14 13 28 28 H 0.96992 * 120.00202 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00106 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47532 * 179.97438 * 12 10 9 31 31 H 1.09000 * 109.46594 * 299.99675 * 12 10 9 32 32 H 1.09001 * 109.47142 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47232 * 300.00701 * 13 12 10 34 34 H 1.09002 * 109.47227 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47175 * 59.99966 * 14 13 12 36 36 H 0.97001 * 119.99732 * 264.99846 * 17 15 14 37 37 H 1.09007 * 109.52008 * 63.16261 * 22 20 18 38 38 H 1.08997 * 109.57581 * 303.00593 * 22 20 18 39 39 H 1.08998 * 109.48371 * 297.63244 * 23 22 20 40 40 H 1.09004 * 109.48242 * 177.59100 * 23 22 20 41 41 H 1.08994 * 109.48072 * 181.14100 * 25 24 23 42 42 H 1.09001 * 109.47741 * 301.17313 * 25 24 23 43 43 H 1.09001 * 109.52122 * 182.48887 * 26 25 24 44 44 H 1.08995 * 109.57446 * 62.33001 * 26 25 24 45 45 H 1.08991 * 109.47472 * 59.99723 * 27 15 14 46 46 H 1.09001 * 109.47142 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9685 -3.5502 -0.5918 12 6 2.4232 -4.0362 1.4349 13 6 1.1456 -4.1857 2.2632 14 6 0.2679 -5.2808 1.6538 15 6 -0.0970 -4.9014 0.2172 16 1 -0.6421 -3.9575 0.2180 17 7 -0.9379 -5.9498 -0.3661 18 6 -2.2699 -5.9370 -0.1614 19 8 -2.7724 -5.0579 0.5062 20 6 -3.1349 -7.0150 -0.7619 21 9 -2.8367 -7.1509 -2.1220 22 6 -4.6107 -6.6397 -0.5958 23 6 -5.4822 -7.7748 -1.1395 24 8 -5.1671 -8.9870 -0.4513 25 6 -3.8121 -9.4125 -0.6097 26 6 -2.8735 -8.3431 -0.0448 27 6 1.1806 -4.7519 -0.6111 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 2.9679 -4.9803 1.4342 31 1 3.0484 -3.2560 1.8690 32 1 1.4056 -4.4556 3.2868 33 1 0.6005 -3.2417 2.2640 34 1 -0.6421 -5.3876 2.2441 35 1 0.8130 -6.2248 1.6529 36 1 -0.5359 -6.6531 -0.8997 37 1 -4.8182 -5.7240 -1.1496 38 1 -4.8315 -6.4846 0.4602 39 1 -5.2909 -7.9016 -2.2051 40 1 -6.5335 -7.5320 -0.9850 41 1 -3.6603 -10.3493 -0.0736 42 1 -3.5990 -9.5607 -1.6683 43 1 -1.8386 -8.6457 -0.2044 44 1 -3.0574 -8.2230 1.0228 45 1 1.7257 -5.6958 -0.6119 46 1 0.9206 -4.4812 -1.6344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981131171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:59 Heat of formation + Delta-G solvation = -135.049363 kcal Electronic energy + Delta-G solvation = -27753.382406 eV Core-core repulsion = 23784.867422 eV Total energy + Delta-G solvation = -3968.514984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.21638 -40.12136 -39.03819 -37.96315 -34.59687 -33.45004 -33.00051 -31.58829 -30.95485 -29.38609 -28.07949 -26.08886 -24.12467 -23.66277 -22.32391 -21.90404 -20.96007 -20.10136 -18.85131 -17.77525 -17.30455 -16.88168 -16.43502 -16.13606 -15.71797 -15.40144 -15.04850 -14.88454 -14.61252 -14.33872 -14.07547 -13.59294 -13.57521 -13.23054 -12.98551 -12.88076 -12.80471 -12.65163 -12.35389 -12.07399 -11.78724 -11.76150 -11.42310 -11.07108 -10.92177 -10.89488 -10.82661 -10.73803 -10.27307 -10.21532 -10.13072 -10.09397 -9.86403 -9.53923 -9.41832 -8.96475 -8.79867 -6.93669 -5.73254 -3.02665 2.43149 2.94927 3.44795 3.49839 3.50308 3.51847 3.92751 4.03654 4.34328 4.40281 4.51379 4.60961 4.83495 4.97979 5.06555 5.09863 5.17431 5.22787 5.29766 5.33763 5.45043 5.52382 5.59912 5.66686 5.69667 5.70984 5.81602 5.86804 5.87943 6.05084 6.08611 6.16222 6.32466 6.40292 6.58774 6.61465 6.77671 6.78798 6.82999 6.99966 7.09296 7.46189 7.72295 8.12393 8.44489 9.55583 10.12849 10.47010 11.48925 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.003225 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.919313 B = 8680.323395 C = 9322.241395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.179 3.821 11 H 0.052 0.948 12 C -0.135 4.135 13 C -0.110 4.110 14 C -0.119 4.119 15 C 0.143 3.857 16 H 0.100 0.900 17 N -0.713 5.713 18 C 0.498 3.502 19 O -0.512 6.512 20 C 0.106 3.894 21 F -0.193 7.193 22 C -0.162 4.162 23 C 0.060 3.940 24 O -0.380 6.380 25 C 0.063 3.937 26 C -0.173 4.173 27 C -0.128 4.128 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.397 0.603 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -21.230 -1.294 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.040 3.960 16 H 0.118 0.882 17 N -0.362 5.362 18 C 0.281 3.719 19 O -0.387 6.387 20 C 0.084 3.916 21 F -0.174 7.174 22 C -0.200 4.200 23 C -0.016 4.016 24 O -0.298 6.298 25 C -0.014 4.014 26 C -0.211 4.211 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.939 -20.521 -0.742 21.376 hybrid contribution 0.702 0.842 -0.494 1.203 sum -5.236 -19.679 -1.236 20.402 Atomic orbital electron populations 1.69664 1.05048 1.25641 1.57473 1.24739 0.95459 0.97617 1.03046 0.86230 0.78639 0.84096 0.77439 1.21824 1.21844 1.20827 1.19220 0.90945 0.84132 1.42811 0.91214 1.42509 1.05764 0.99627 1.88528 1.20158 0.93965 0.85930 0.93077 0.93040 1.22181 0.96872 0.99493 0.99019 1.21358 0.96731 0.99248 0.97436 1.21839 0.99636 0.98832 0.95495 1.21157 0.91220 0.91147 0.92467 0.88171 1.46154 1.06596 1.30160 1.53336 1.20579 0.83258 0.86271 0.81817 1.90791 1.73234 1.35815 1.38860 1.21243 0.96763 0.96035 0.77518 1.92897 1.94560 1.96874 1.33026 1.22597 0.91234 1.00524 1.05631 1.22647 0.99776 0.83304 0.95921 1.87955 1.27471 1.40977 1.73434 1.22559 0.81426 0.96630 1.00822 1.22789 1.02298 0.93704 1.02318 1.22084 0.95329 0.99644 0.99627 0.93502 0.78070 0.93867 0.91932 0.93204 0.90298 0.92341 0.92720 0.76868 0.88785 0.88015 0.92355 0.87772 0.87898 0.92235 0.89078 0.88449 0.91993 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.63 4.28 -53.42 -0.23 -17.86 16 10 C 0.18 3.41 3.10 -67.93 -0.21 3.20 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.33 5.61 -26.73 -0.15 -2.48 16 13 C -0.11 -1.87 5.77 -26.73 -0.15 -2.03 16 14 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 15 C 0.14 2.32 2.28 -67.93 -0.15 2.16 16 16 H 0.10 2.09 5.94 -51.93 -0.31 1.78 16 17 N -0.71 -9.54 5.05 -53.81 -0.27 -9.81 16 18 C 0.50 7.30 6.77 -10.99 -0.07 7.23 16 19 O -0.51 -9.63 15.59 5.56 0.09 -9.54 16 20 C 0.11 1.20 1.07 -91.58 -0.10 1.10 16 21 F -0.19 -2.26 16.00 2.25 0.04 -2.22 16 22 C -0.16 -1.76 4.61 -26.59 -0.12 -1.88 16 23 C 0.06 0.54 6.72 37.20 0.25 0.79 16 24 O -0.38 -3.76 10.77 -35.23 -0.38 -4.14 16 25 C 0.06 0.49 6.72 37.20 0.25 0.74 16 26 C -0.17 -1.48 5.19 -26.59 -0.14 -1.62 16 27 C -0.13 -2.00 5.08 -26.73 -0.14 -2.14 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.17 6.06 -40.82 -0.25 9.92 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.65 7.60 -51.93 -0.39 1.25 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 4.17 8.57 -40.82 -0.35 3.82 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.10 1.17 7.90 -51.93 -0.41 0.76 16 39 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -32.35 363.31 -8.28 -40.63 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.57 Total: 11.70 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.13 Total: -4.06 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.22 Total: -55.30 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.29 Total: -13.67 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.35 -8.28 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981131171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.417 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds