Wall clock time and date at job start Tue Mar 31 2020 11:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48500 * 109.47516 * 270.00197 * 3 2 1 5 5 H 1.48502 * 109.47091 * 30.00340 * 3 2 1 6 6 H 1.48506 * 109.47000 * 150.00167 * 3 2 1 7 7 C 1.38814 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99760 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99697 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47172 * 325.00093 * 10 9 7 12 12 C 1.53003 * 109.47068 * 85.00275 * 10 9 7 13 13 C 1.52999 * 109.47337 * 59.99453 * 12 10 9 14 14 C 1.53001 * 109.46847 * 60.00156 * 13 12 10 15 15 C 1.52996 * 109.47229 * 300.00206 * 14 13 12 16 16 H 1.08999 * 109.47290 * 299.99725 * 15 14 13 17 17 N 1.46508 * 109.47086 * 180.02562 * 15 14 13 18 18 C 1.34770 * 119.99802 * 84.99796 * 17 15 14 19 19 O 1.21282 * 120.00175 * 359.97438 * 18 17 15 20 20 C 1.50697 * 119.99846 * 179.97438 * 18 17 15 21 21 F 1.39901 * 109.54541 * 310.17972 * 20 18 17 22 22 C 1.53181 * 109.54628 * 189.99653 * 20 18 17 23 23 C 1.53090 * 109.16481 * 183.06170 * 22 20 18 24 24 O 1.42905 * 109.41466 * 57.61337 * 23 22 20 25 25 C 1.42905 * 114.09831 * 298.84306 * 24 23 22 26 26 C 1.53087 * 109.41504 * 61.15479 * 25 24 23 27 27 C 1.52999 * 109.47373 * 60.00116 * 15 14 13 28 28 H 0.96992 * 120.00202 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00106 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47532 * 179.97438 * 12 10 9 31 31 H 1.09000 * 109.46594 * 299.99675 * 12 10 9 32 32 H 1.09001 * 109.47142 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47232 * 300.00701 * 13 12 10 34 34 H 1.09002 * 109.47227 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47175 * 59.99966 * 14 13 12 36 36 H 0.97001 * 119.99732 * 264.99846 * 17 15 14 37 37 H 1.09007 * 109.52008 * 63.16261 * 22 20 18 38 38 H 1.08997 * 109.57581 * 303.00593 * 22 20 18 39 39 H 1.08998 * 109.48371 * 297.63244 * 23 22 20 40 40 H 1.09004 * 109.48242 * 177.59100 * 23 22 20 41 41 H 1.08994 * 109.48072 * 181.14100 * 25 24 23 42 42 H 1.09001 * 109.47741 * 301.17313 * 25 24 23 43 43 H 1.09001 * 109.52122 * 182.48887 * 26 25 24 44 44 H 1.08995 * 109.57446 * 62.33001 * 26 25 24 45 45 H 1.08991 * 109.47472 * 59.99723 * 27 15 14 46 46 H 1.09001 * 109.47142 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9685 -3.5502 -0.5918 12 6 2.4232 -4.0362 1.4349 13 6 1.1456 -4.1857 2.2632 14 6 0.2679 -5.2808 1.6538 15 6 -0.0970 -4.9014 0.2172 16 1 -0.6421 -3.9575 0.2180 17 7 -0.9379 -5.9498 -0.3661 18 6 -2.2699 -5.9370 -0.1614 19 8 -2.7724 -5.0579 0.5062 20 6 -3.1349 -7.0150 -0.7619 21 9 -2.8367 -7.1509 -2.1220 22 6 -4.6107 -6.6397 -0.5958 23 6 -5.4822 -7.7748 -1.1395 24 8 -5.1671 -8.9870 -0.4513 25 6 -3.8121 -9.4125 -0.6097 26 6 -2.8735 -8.3431 -0.0448 27 6 1.1806 -4.7519 -0.6111 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 2.9679 -4.9803 1.4342 31 1 3.0484 -3.2560 1.8690 32 1 1.4056 -4.4556 3.2868 33 1 0.6005 -3.2417 2.2640 34 1 -0.6421 -5.3876 2.2441 35 1 0.8130 -6.2248 1.6529 36 1 -0.5359 -6.6531 -0.8997 37 1 -4.8182 -5.7240 -1.1496 38 1 -4.8315 -6.4846 0.4602 39 1 -5.2909 -7.9016 -2.2051 40 1 -6.5335 -7.5320 -0.9850 41 1 -3.6603 -10.3493 -0.0736 42 1 -3.5990 -9.5607 -1.6683 43 1 -1.8386 -8.6457 -0.2044 44 1 -3.0574 -8.2230 1.0228 45 1 1.7257 -5.6958 -0.6119 46 1 0.9206 -4.4812 -1.6344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981131171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:58 Heat of formation + Delta-G solvation = -157.675343 kcal Electronic energy + Delta-G solvation = -27754.363542 eV Core-core repulsion = 23784.867422 eV Total energy + Delta-G solvation = -3969.496120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.15145 -41.30805 -39.95754 -39.23233 -36.12844 -34.82581 -34.19530 -32.72000 -32.30700 -30.74627 -29.72601 -26.99275 -25.69626 -24.83805 -23.48944 -23.31933 -22.08820 -21.10674 -20.20665 -19.26457 -18.91934 -17.85794 -17.36822 -17.02327 -16.72509 -16.57595 -16.26190 -16.19761 -15.81053 -15.48358 -15.37475 -15.31902 -15.13510 -14.76707 -14.02875 -13.72778 -13.64535 -13.62038 -13.51661 -13.44950 -13.36816 -12.89660 -12.84462 -12.60822 -12.49977 -12.22105 -12.16641 -11.84794 -11.81845 -11.68460 -11.60434 -11.44546 -11.21536 -10.95708 -10.84764 -10.51262 -10.14745 -8.97113 -7.91795 -5.19674 1.27340 1.45297 1.47025 1.55278 1.83770 2.56811 2.85486 3.07144 3.18815 3.37576 3.42168 3.56586 3.73370 3.79566 3.88916 4.04503 4.15272 4.15669 4.26138 4.33289 4.42714 4.45122 4.51572 4.55728 4.56328 4.66739 4.72308 4.73177 4.79445 4.88502 4.93164 4.99625 5.05668 5.08256 5.15505 5.28086 5.38046 5.41483 5.51226 5.60174 5.66409 6.13502 6.29964 6.34837 7.02366 7.35427 8.14702 8.35027 9.31764 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.003225 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.919313 B = 8680.323395 C = 9322.241395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.267 1.267 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.735 5.735 10 C 0.167 3.833 11 H 0.054 0.946 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.108 4.108 15 C 0.150 3.850 16 H 0.043 0.957 17 N -0.698 5.698 18 C 0.492 3.508 19 O -0.563 6.563 20 C 0.112 3.888 21 F -0.193 7.193 22 C -0.164 4.164 23 C 0.066 3.934 24 O -0.394 6.394 25 C 0.059 3.941 26 C -0.167 4.167 27 C -0.116 4.116 28 H 0.247 0.753 29 H 0.370 0.630 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.416 0.584 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.128 0.872 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 -24.543 -1.630 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.273 4.273 3 Si 0.799 3.201 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.059 3.941 11 H 0.072 0.928 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.146 4.146 15 C 0.045 3.955 16 H 0.062 0.938 17 N -0.348 5.348 18 C 0.276 3.724 19 O -0.441 6.441 20 C 0.090 3.910 21 F -0.174 7.174 22 C -0.203 4.203 23 C -0.011 4.011 24 O -0.313 6.313 25 C -0.017 4.017 26 C -0.205 4.205 27 C -0.154 4.154 28 H 0.056 0.944 29 H 0.202 0.798 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.146 0.854 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.112 0.888 45 H 0.129 0.871 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.084 -23.911 -1.102 24.282 hybrid contribution 0.193 1.810 -0.392 1.862 sum -3.892 -22.101 -1.494 22.491 Atomic orbital electron populations 1.69852 1.06754 1.25685 1.60195 1.25544 0.96209 1.01096 1.04457 0.85187 0.77733 0.79854 0.77302 1.21575 1.22813 1.19209 1.19657 0.91458 0.85303 1.39915 0.90348 1.42754 1.05341 1.01051 1.88468 1.20502 0.94143 0.84774 0.94708 0.92772 1.22054 0.96678 1.00895 0.96945 1.21295 0.96579 0.97594 0.99044 1.21739 0.99145 0.99675 0.94073 1.20846 0.91115 0.89715 0.93794 0.93826 1.45945 1.06164 1.29763 1.52963 1.21270 0.83688 0.86323 0.81076 1.90776 1.74167 1.37955 1.41216 1.21205 0.95872 0.96381 0.77499 1.92898 1.94524 1.96848 1.33083 1.22612 0.91763 1.01031 1.04857 1.22665 1.00091 0.82338 0.96005 1.87943 1.28776 1.40885 1.73657 1.22776 0.80154 0.97065 1.01693 1.22838 1.04105 0.91931 1.01653 1.21969 0.94715 1.00492 0.98263 0.94422 0.79768 0.89416 0.94103 0.91158 0.95445 0.93660 0.88636 0.74618 0.90181 0.89185 0.91662 0.86359 0.85424 0.91458 0.86647 0.88768 0.87085 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.23 13.06 21.65 0.28 -61.94 16 2 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 3 Si 0.97 47.34 29.55 68.60 2.03 49.36 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.23 -12.87 9.93 84.03 0.83 -12.04 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -36.90 4.28 -322.92 -1.38 -38.29 16 10 C 0.17 6.16 3.10 44.99 0.14 6.30 16 11 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 12 C -0.13 -4.06 5.61 30.59 0.17 -3.89 16 13 C -0.11 -3.58 5.77 30.59 0.18 -3.40 16 14 C -0.11 -3.10 5.49 30.59 0.17 -2.94 16 15 C 0.15 4.77 2.28 44.99 0.10 4.87 16 16 H 0.04 1.93 5.94 -2.39 -0.01 1.92 16 17 N -0.70 -17.73 5.05 -442.54 -2.23 -19.96 16 18 C 0.49 14.46 6.77 87.66 0.59 15.05 16 19 O -0.56 -22.34 15.59 -3.04 -0.05 -22.39 16 20 C 0.11 2.42 1.07 -11.42 -0.01 2.41 16 21 F -0.19 -4.19 16.00 44.97 0.72 -3.47 16 22 C -0.16 -3.61 4.61 30.68 0.14 -3.47 16 23 C 0.07 1.10 6.72 72.01 0.48 1.58 16 24 O -0.39 -6.98 10.77 -148.98 -1.60 -8.58 16 25 C 0.06 0.75 6.72 72.01 0.48 1.23 16 26 C -0.17 -2.42 5.19 30.69 0.16 -2.26 16 27 C -0.12 -3.38 5.08 30.60 0.16 -3.22 16 28 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.37 20.72 6.06 -92.71 -0.56 20.15 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.03 1.19 7.60 -2.39 -0.02 1.17 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.42 7.39 8.57 -92.71 -0.79 6.60 16 37 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.09 2.17 7.90 -2.39 -0.02 2.15 16 39 H 0.07 1.01 7.93 -2.39 -0.02 0.99 16 40 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.76 7.93 -2.39 -0.02 0.75 16 43 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -75.28 363.31 1.46 -73.83 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.37 Total: 35.53 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.06 Total: -4.09 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.33 Total: -120.19 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.65 Total: -30.97 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.72 Total: -3.47 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -75.28 1.46 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981131171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.849 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds