Wall clock time and date at job start Tue Mar 31 2020 11:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 115.54822 * 2 1 4 4 C 1.37979 * 120.07172 * 114.05708 * 3 2 1 5 5 C 1.38339 * 120.14153 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.29350 * 359.97438 * 5 4 3 7 7 C 1.37935 * 120.14227 * 359.97438 * 6 5 4 8 8 C 1.39556 * 120.07178 * 293.77923 * 3 2 1 9 9 C 1.47847 * 120.14478 * 359.97438 * 8 3 2 10 10 O 1.21551 * 120.00132 * 354.03988 * 9 8 3 11 11 N 1.34779 * 120.00041 * 174.03596 * 9 8 3 12 12 C 1.46498 * 119.99974 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.88902 * 328.88227 * 12 11 9 14 14 C 1.55153 * 111.00409 * 205.00482 * 12 11 9 15 15 C 1.54324 * 102.94042 * 277.42868 * 14 12 11 16 16 N 1.47016 * 107.27262 * 337.80563 * 15 14 12 17 17 C 1.36936 * 125.64821 * 178.98653 * 16 15 14 18 18 H 1.08003 * 119.99948 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00414 * 359.97438 * 17 16 15 20 20 N 1.31625 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00551 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47004 * 59.99811 * 21 19 17 23 23 H 1.48501 * 109.47480 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47152 * 300.00175 * 21 19 17 25 25 C 1.47423 * 108.70130 * 358.94306 * 16 15 14 26 26 C 1.52998 * 117.49919 * 214.29273 * 2 1 3 27 27 C 1.52998 * 117.50341 * 145.66753 * 2 1 3 28 28 H 1.09006 * 109.46947 * 271.24945 * 1 2 3 29 29 H 1.08998 * 109.47229 * 151.24779 * 1 2 3 30 30 H 1.09003 * 109.47238 * 31.24521 * 1 2 3 31 31 H 1.07991 * 119.93347 * 0.02562 * 4 3 2 32 32 H 1.07993 * 119.85438 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.92570 * 179.97438 * 6 5 4 34 34 H 1.08004 * 120.07162 * 180.02562 * 7 6 5 35 35 H 0.97001 * 119.99733 * 0.02562 * 11 9 8 36 36 H 1.09002 * 110.72036 * 35.79163 * 14 12 11 37 37 H 1.09000 * 110.72223 * 159.06826 * 14 12 11 38 38 H 1.09004 * 109.88374 * 97.22752 * 15 14 12 39 39 H 1.09007 * 109.88386 * 218.38866 * 15 14 12 40 40 H 0.97000 * 120.00206 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36472 * 265.28691 * 25 16 15 42 42 H 1.08998 * 110.36393 * 142.96728 * 25 16 15 43 43 H 1.08998 * 117.49902 * 359.97438 * 26 2 1 44 44 H 1.08999 * 117.49787 * 145.01949 * 26 2 1 45 45 H 1.08999 * 117.50536 * 214.98295 * 27 2 1 46 46 H 1.09008 * 117.49751 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.9172 1.7736 1.0903 5 6 3.5140 3.0216 1.0921 6 6 3.3766 3.8626 0.0018 7 6 2.6430 3.4606 -1.0950 8 6 2.0421 2.2006 -1.1052 9 6 1.2591 1.7610 -2.2797 10 8 0.8250 0.6268 -2.3307 11 7 1.0265 2.6178 -3.2937 12 6 0.2501 2.1823 -4.4572 13 1 0.3939 1.1181 -4.6441 14 6 0.6106 3.0209 -5.7118 15 6 -0.2512 4.2893 -5.5390 16 7 -1.3662 3.9412 -4.6463 17 6 -2.3489 4.7971 -4.2256 18 1 -3.1282 4.4427 -3.5672 19 6 -2.3435 6.1202 -4.6454 20 7 -1.3940 6.5520 -5.4482 21 14 -3.6836 7.2879 -4.0711 22 1 -3.6568 7.3816 -2.5893 23 1 -3.4528 8.6328 -4.6569 24 1 -5.0070 6.7774 -4.5109 25 6 -1.2516 2.5179 -4.2798 26 6 2.2364 -1.1212 -0.7646 27 6 2.2365 -1.1206 0.7654 28 1 -0.3633 0.0224 1.0275 29 1 -0.3633 -0.9009 -0.4943 30 1 -0.3634 0.8786 -0.5331 31 1 3.0287 1.1219 1.9442 32 1 4.0905 3.3407 1.9478 33 1 3.8447 4.8359 0.0096 34 1 2.5368 4.1177 -1.9455 35 1 1.3733 3.5228 -3.2531 36 1 1.6711 3.2727 -5.7158 37 1 0.3360 2.4893 -6.6230 38 1 0.3458 5.0852 -5.0936 39 1 -0.6373 4.6100 -6.5066 40 1 -1.3900 7.4767 -5.7413 41 1 -1.8587 1.9047 -4.9458 42 1 -1.5541 2.3675 -3.2435 43 1 1.6112 -1.8591 -1.2673 44 1 3.1715 -0.8755 -1.2680 45 1 3.1716 -0.8747 1.2686 46 1 1.6113 -1.8583 1.2686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015691176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:00 Heat of formation + Delta-G solvation = 30.388906 kcal Electronic energy + Delta-G solvation = -26759.446208 eV Core-core repulsion = 23228.874390 eV Total energy + Delta-G solvation = -3530.571818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60349 -39.98216 -38.52214 -38.06431 -35.35669 -33.74138 -32.12590 -31.57300 -30.88672 -29.35374 -28.87908 -26.51952 -24.98719 -24.04641 -23.17299 -22.12301 -21.84791 -21.07890 -20.30631 -19.05238 -18.54398 -17.45268 -16.88752 -16.67663 -16.05972 -16.04134 -15.96037 -15.64184 -15.48971 -15.08442 -14.98628 -14.44245 -14.15007 -13.95329 -13.78650 -13.55021 -13.28242 -13.17072 -13.13793 -12.87796 -12.79243 -12.44667 -12.26487 -12.26239 -12.10706 -12.04758 -11.92014 -11.81431 -11.58857 -11.25327 -10.90821 -10.71805 -10.38128 -10.05255 -9.85352 -9.59187 -8.86358 -7.85468 -5.19675 -0.07063 0.40151 1.44838 1.47048 1.53521 1.97028 2.27264 2.48737 2.82916 3.01186 3.33224 3.61796 3.67563 3.71859 3.86381 3.93238 4.01107 4.08578 4.11393 4.20509 4.27318 4.31628 4.49855 4.53306 4.67328 4.74122 4.80625 4.81601 4.89613 4.91535 4.95675 4.99108 5.00155 5.03584 5.07834 5.19071 5.31723 5.36697 5.42727 5.43220 5.51803 5.56657 5.62344 5.69347 5.75786 5.97558 6.19312 6.64038 7.11288 7.31362 7.76750 8.41159 9.24226 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003864 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.014879 B = 7243.899039 C = 7735.617945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.085 4.085 3 C -0.006 4.006 4 C -0.128 4.128 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.095 4.095 8 C -0.150 4.150 9 C 0.548 3.452 10 O -0.544 6.544 11 N -0.704 5.704 12 C 0.145 3.855 13 H 0.104 0.896 14 C -0.135 4.135 15 C 0.185 3.815 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.124 3.876 26 C -0.147 4.147 27 C -0.159 4.159 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.127 0.873 35 H 0.402 0.598 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.019 0.981 39 H 0.009 0.991 40 H 0.248 0.752 41 H 0.030 0.970 42 H 0.025 0.975 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.538 -10.724 12.703 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.007 4.007 4 C -0.146 4.146 5 C -0.105 4.105 6 C -0.151 4.151 7 C -0.114 4.114 8 C -0.153 4.153 9 C 0.337 3.663 10 O -0.423 6.423 11 N -0.354 5.354 12 C 0.039 3.961 13 H 0.122 0.878 14 C -0.173 4.173 15 C 0.060 3.940 16 N -0.347 5.347 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.594 5.594 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.002 4.002 26 C -0.184 4.184 27 C -0.196 4.196 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.169 0.831 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.145 0.855 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.154 -11.328 12.601 21.450 hybrid contribution -1.030 1.491 -0.366 1.849 sum 12.124 -9.836 12.235 19.836 Atomic orbital electron populations 1.21083 0.92006 1.01185 0.99975 1.19867 0.94172 0.87634 1.06876 1.19350 0.95063 0.93718 0.92588 1.21298 0.97784 0.97581 0.97939 1.21726 0.97219 0.92917 0.98646 1.21438 0.99199 1.01309 0.93162 1.21523 0.96042 0.94121 0.99668 1.19869 1.03273 0.96712 0.95402 1.18566 0.79899 0.85067 0.82818 1.90743 1.52350 1.19637 1.79547 1.45789 1.54494 1.15783 1.19367 1.21904 0.89958 0.98987 0.85217 0.87835 1.23085 1.00752 0.96555 0.96947 1.20941 0.87521 0.92938 0.92554 1.44687 1.28684 1.05772 1.55540 1.19300 1.03262 0.90974 1.23722 0.91070 1.25509 1.00869 0.98421 1.00268 1.70141 1.35116 1.15461 1.38695 0.85236 0.78856 0.77983 0.77736 1.20613 1.21629 1.20703 1.22039 0.95423 0.85688 0.97050 1.22786 1.01150 1.00055 0.94433 1.23308 1.02484 0.99812 0.94007 0.92366 0.92837 0.94973 0.83143 0.82228 0.83116 0.85483 0.76269 0.89060 0.89145 0.96242 0.97266 0.94311 0.95202 0.95651 0.89544 0.90313 0.87243 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 8.41 71.98 0.61 -1.80 16 2 C -0.09 -2.15 1.25 -52.93 -0.07 -2.22 16 3 C -0.01 -0.16 5.13 -19.61 -0.10 -0.26 16 4 C -0.13 -2.47 9.22 22.23 0.20 -2.27 16 5 C -0.09 -1.44 10.04 22.33 0.22 -1.22 16 6 C -0.13 -2.56 10.03 22.23 0.22 -2.34 16 7 C -0.09 -2.36 9.53 22.53 0.21 -2.15 16 8 C -0.15 -4.33 5.78 -20.09 -0.12 -4.44 16 9 C 0.55 18.40 7.09 86.79 0.62 19.01 16 10 O -0.54 -19.76 10.91 -3.88 -0.04 -19.81 16 11 N -0.70 -23.76 5.14 -438.84 -2.25 -26.02 16 12 C 0.15 5.15 3.43 46.38 0.16 5.31 16 13 H 0.10 3.47 7.54 -2.39 -0.02 3.46 16 14 C -0.13 -4.67 6.55 31.78 0.21 -4.46 16 15 C 0.19 8.80 5.36 86.73 0.47 9.26 16 16 N -0.62 -31.91 3.39 -692.01 -2.35 -34.26 16 17 C -0.24 -13.87 10.28 84.03 0.86 -13.00 16 18 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 19 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 20 N -0.95 -55.67 10.31 21.65 0.22 -55.45 16 21 Si 0.97 45.98 29.55 68.60 2.03 48.00 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 25 C 0.12 5.41 6.93 86.85 0.60 6.01 16 26 C -0.15 -3.58 8.52 30.59 0.26 -3.32 16 27 C -0.16 -2.96 9.44 30.59 0.29 -2.68 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.51 7.88 -2.39 -0.02 1.50 16 30 H 0.03 1.09 6.30 -2.39 -0.02 1.08 16 31 H 0.15 2.11 7.04 -2.92 -0.02 2.09 16 32 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.13 3.07 6.45 -2.91 -0.02 3.05 16 35 H 0.40 13.21 6.74 -92.71 -0.62 12.59 16 36 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.02 1.01 7.38 -2.38 -0.02 0.99 16 39 H 0.01 0.49 7.50 -2.38 -0.02 0.47 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 1.63 7.16 -2.39 -0.02 1.61 16 46 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -68.26 364.39 3.08 -65.18 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.36 Total: 25.68 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.12 Total: -3.33 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -4.38 Total: -115.72 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.04 Total: -19.81 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -68.26 3.08 -65.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015691176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.570 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds