Wall clock time and date at job start Tue Mar 31 2020 11:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00334 * 2 1 4 4 H 1.48500 * 109.47153 * 275.17493 * 3 2 1 5 5 H 1.48502 * 109.47028 * 35.17237 * 3 2 1 6 6 H 1.48501 * 109.47448 * 155.17449 * 3 2 1 7 7 C 1.38819 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99871 * 340.34412 * 7 2 1 9 9 N 1.36936 * 119.99830 * 160.33952 * 7 2 1 10 10 C 1.46894 * 120.26363 * 332.54699 * 9 7 2 11 11 C 1.53346 * 108.78846 * 236.73332 * 10 9 7 12 12 C 1.53185 * 108.88572 * 308.91193 * 11 10 9 13 13 C 1.52851 * 117.65763 * 269.89629 * 12 11 10 14 14 C 1.52815 * 117.71236 * 201.04197 * 12 11 10 15 15 H 1.09002 * 117.50550 * 0.11327 * 14 12 11 16 16 N 1.46499 * 117.50373 * 215.09784 * 14 12 11 17 17 C 1.34781 * 120.00167 * 154.99887 * 16 14 12 18 18 O 1.21287 * 119.99790 * 0.02562 * 17 16 14 19 19 C 1.50702 * 120.00128 * 180.02562 * 17 16 14 20 20 C 1.50285 * 109.46621 * 300.02949 * 19 17 16 21 21 C 1.32330 * 121.60024 * 303.32429 * 20 19 17 22 22 C 1.45199 * 123.00447 * 1.02092 * 21 20 19 23 23 C 1.32946 * 125.19686 * 319.52328 * 22 21 20 24 24 C 1.45198 * 125.19873 * 0.02562 * 23 22 21 25 25 C 1.32294 * 123.02261 * 40.42987 * 24 23 22 26 26 C 1.53179 * 115.07838 * 55.36991 * 12 11 10 27 27 C 1.46851 * 120.37995 * 152.60912 * 9 7 2 28 28 H 0.96994 * 119.99675 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47187 * 117.01288 * 10 9 7 30 30 H 1.09003 * 109.71418 * 356.59781 * 10 9 7 31 31 H 1.09001 * 109.58631 * 189.05598 * 11 10 9 32 32 H 1.09000 * 109.58993 * 68.76788 * 11 10 9 33 33 H 1.09001 * 117.50583 * 359.77146 * 13 12 11 34 34 H 1.09006 * 117.50213 * 144.81457 * 13 12 11 35 35 H 0.96999 * 120.00020 * 335.00735 * 16 14 12 36 36 H 1.09000 * 109.46447 * 60.01456 * 19 17 16 37 37 H 1.08000 * 119.20734 * 123.31879 * 20 19 17 38 38 H 1.07995 * 118.50633 * 181.02106 * 21 20 19 39 39 H 1.07996 * 117.40034 * 139.54633 * 22 21 20 40 40 H 1.08001 * 117.40054 * 180.02562 * 23 22 21 41 41 H 1.08001 * 118.48671 * 220.46015 * 24 23 22 42 42 H 1.08003 * 119.20080 * 178.99760 * 25 24 23 43 43 H 1.08995 * 109.58672 * 64.34040 * 26 12 11 44 44 H 1.09003 * 109.58976 * 184.62150 * 26 12 11 45 45 H 1.08994 * 109.58180 * 3.31923 * 27 9 7 46 46 H 1.08999 * 109.58000 * 242.91119 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3885 2.1094 -1.3944 5 1 1.5067 2.6186 0.8065 6 1 3.5983 1.4110 0.5878 7 6 2.0103 -1.2022 0.0005 8 1 1.5174 -2.1101 0.3156 9 7 3.3198 -1.2370 -0.3984 10 6 3.8289 -0.2450 -1.3548 11 6 4.4209 -0.9817 -2.5624 12 6 5.4048 -2.0438 -2.0617 13 6 6.8668 -1.6321 -1.8906 14 6 6.4599 -2.5537 -3.0425 15 1 6.4580 -2.1326 -4.0478 16 7 6.8452 -3.9640 -2.9489 17 6 7.3455 -4.5990 -4.0273 18 8 7.4773 -4.0026 -5.0752 19 6 7.7413 -6.0499 -3.9312 20 6 8.8102 -6.2094 -2.8869 21 6 9.9481 -5.5369 -2.9510 22 6 10.2467 -4.5866 -4.0074 23 6 9.9516 -4.7522 -5.2931 24 6 9.2809 -5.9108 -5.8553 25 6 8.2654 -6.5151 -5.2606 26 6 4.8251 -3.0431 -1.0558 27 6 4.2282 -2.2659 0.1237 28 1 -0.4849 0.8400 -0.0004 29 1 4.6032 0.3556 -0.8777 30 1 3.0143 0.4002 -1.6839 31 1 4.9443 -0.2718 -3.2029 32 1 3.6208 -1.4616 -3.1260 33 1 7.1327 -0.6044 -2.1379 34 1 7.4210 -2.0752 -1.0630 35 1 6.7400 -4.4410 -2.1108 36 1 6.8716 -6.6461 -3.6548 37 1 8.6457 -6.8892 -2.0640 38 1 10.6886 -5.7024 -2.1825 39 1 10.7488 -3.6726 -3.7264 40 1 10.2331 -3.9621 -5.9734 41 1 9.6275 -6.2974 -6.8024 42 1 7.8014 -7.3631 -5.7424 43 1 4.0453 -3.6342 -1.5361 44 1 5.6160 -3.7027 -0.6988 45 1 3.6748 -2.9486 0.7684 46 1 5.0289 -1.7921 0.6916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016642642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:43 Heat of formation + Delta-G solvation = 72.000919 kcal Electronic energy + Delta-G solvation = -26415.965202 eV Core-core repulsion = 22887.197817 eV Total energy + Delta-G solvation = -3528.767385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63029 -39.08698 -37.20144 -35.68267 -33.50369 -32.50362 -32.24987 -31.57740 -30.51017 -28.68035 -26.69776 -24.19891 -23.80251 -23.06125 -22.55271 -21.21235 -20.64111 -18.96417 -18.34601 -17.75725 -17.41217 -16.85881 -16.36759 -16.05447 -15.20598 -14.89063 -14.50742 -14.29441 -14.24724 -13.98798 -13.69896 -13.59163 -12.94940 -12.87231 -12.73167 -12.43252 -12.30648 -12.17698 -12.12427 -11.88685 -11.68679 -11.19202 -11.12427 -10.80919 -10.60342 -10.42964 -10.26837 -10.06433 -9.91311 -9.80233 -9.52107 -9.44706 -9.41470 -8.74135 -8.47583 -8.34308 -6.94695 -5.93932 -3.29961 1.04052 1.78037 2.56039 2.98678 3.18912 3.32366 3.48879 3.51612 4.06843 4.48440 4.53230 4.55218 4.69545 4.83036 4.85617 4.87672 4.95899 4.98840 5.02608 5.14868 5.21301 5.31946 5.40884 5.43873 5.68853 5.74013 5.75620 5.86048 5.93683 6.01252 6.05914 6.15788 6.21645 6.30441 6.32322 6.37493 6.43884 6.52367 6.55617 6.56684 6.60974 6.65230 6.70443 6.71178 6.95913 7.51884 7.97912 8.24656 8.33722 8.95707 9.73199 10.10839 11.22147 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.002983 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.239937 B = 9385.007095 C = 9513.645175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.131 3.869 11 C -0.098 4.098 12 C -0.102 4.102 13 C -0.185 4.185 14 C 0.079 3.921 15 H 0.131 0.869 16 N -0.693 5.693 17 C 0.526 3.474 18 O -0.531 6.531 19 C -0.048 4.048 20 C -0.150 4.150 21 C -0.105 4.105 22 C -0.149 4.149 23 C -0.073 4.073 24 C -0.104 4.104 25 C -0.126 4.126 26 C -0.098 4.098 27 C 0.154 3.846 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.400 0.600 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.755 -12.779 -7.189 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.006 3.994 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.223 4.223 14 C -0.027 4.027 15 H 0.149 0.851 16 N -0.342 5.342 17 C 0.312 3.688 18 O -0.407 6.407 19 C -0.070 4.070 20 C -0.168 4.168 21 C -0.123 4.123 22 C -0.167 4.167 23 C -0.091 4.091 24 C -0.122 4.122 25 C -0.145 4.145 26 C -0.137 4.137 27 C 0.028 3.972 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 20.687 -12.265 -7.926 25.323 hybrid contribution 0.416 0.806 0.432 1.005 sum 21.103 -11.459 -7.494 25.156 Atomic orbital electron populations 1.69828 1.05732 1.26510 1.53259 1.25284 0.95240 0.97618 0.99562 0.86919 0.80135 0.84599 0.76808 1.21734 1.23292 1.19418 1.18947 0.84615 0.94652 1.40644 0.89754 1.44284 1.08191 1.32736 1.47587 1.21306 0.96984 0.91889 0.89238 1.21678 0.97297 0.96074 0.98742 1.21903 0.89960 0.99470 0.99043 1.23545 0.98260 1.00084 1.00426 1.21795 1.03141 0.81043 0.96726 0.85118 1.45324 1.64245 1.11028 1.13613 1.20352 0.76392 0.88451 0.83562 1.90681 1.53518 1.67605 1.28897 1.19228 0.98816 0.94343 0.94599 1.22932 0.95079 1.01173 0.97616 1.21144 0.97111 0.95998 0.98011 1.21006 1.03899 0.98939 0.92838 1.21044 0.96174 0.96278 0.95569 1.21018 0.96682 0.95094 0.99422 1.22693 0.98043 1.00476 0.93256 1.21609 0.99002 0.96193 0.96902 1.20843 0.92576 0.90966 0.92807 0.92797 0.95496 0.91046 0.92630 0.91173 0.88522 0.88936 0.76487 0.87432 0.85896 0.86403 0.87117 0.87001 0.86535 0.86208 0.91331 0.93199 0.91792 0.95880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 2 C 0.02 0.63 5.26 -17.43 -0.09 0.53 16 3 Si 0.88 22.44 24.35 -169.99 -4.14 18.30 16 4 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.27 -6.67 6.45 56.52 0.36 -6.31 16 7 C -0.26 -7.23 10.02 -15.06 -0.15 -7.38 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.60 -14.16 2.73 -172.22 -0.47 -14.63 16 10 C 0.13 2.85 4.20 -3.65 -0.02 2.84 16 11 C -0.10 -1.76 5.82 -26.46 -0.15 -1.92 16 12 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 13 C -0.18 -2.46 9.87 -26.79 -0.26 -2.73 16 14 C 0.08 1.08 6.14 -68.01 -0.42 0.67 16 15 H 0.13 1.99 7.40 -51.93 -0.38 1.61 16 16 N -0.69 -8.24 5.24 -53.88 -0.28 -8.53 16 17 C 0.53 6.61 5.48 -10.98 -0.06 6.55 16 18 O -0.53 -8.39 13.24 5.55 0.07 -8.32 16 19 C -0.05 -0.46 2.89 -94.48 -0.27 -0.73 16 20 C -0.15 -1.21 8.89 -36.44 -0.32 -1.53 16 21 C -0.10 -0.91 9.58 -38.75 -0.37 -1.29 16 22 C -0.15 -1.51 8.53 -38.65 -0.33 -1.84 16 23 C -0.07 -0.78 7.35 -38.65 -0.28 -1.06 16 24 C -0.10 -1.04 9.09 -38.75 -0.35 -1.39 16 25 C -0.13 -1.21 8.77 -36.44 -0.32 -1.53 16 26 C -0.10 -1.51 5.38 -26.46 -0.14 -1.65 16 27 C 0.15 2.92 6.52 -3.67 -0.02 2.90 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.03 0.58 7.15 -51.93 -0.37 0.21 16 30 H 0.07 1.71 4.17 -51.93 -0.22 1.50 16 31 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.02 7.00 -40.82 -0.29 3.73 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 39 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.61 6.74 -51.93 -0.35 0.26 16 45 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -32.69 357.57 -9.66 -42.35 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.13 Total: 4.05 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.87 Total: -11.43 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.02 Total: -50.35 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.69 -9.66 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016642642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.355 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds