Wall clock time and date at job start Tue Mar 31 2020 10:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47162 * 300.00219 * 3 2 1 6 6 H 1.48495 * 109.47458 * 60.00312 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.34769 * 120.00014 * 107.50467 * 15 13 12 17 17 O 1.21557 * 120.00118 * 359.97438 * 16 15 13 18 18 C 1.47851 * 120.00172 * 179.97438 * 16 15 13 19 19 C 1.39573 * 120.13954 * 359.71951 * 18 16 15 20 20 C 1.37964 * 119.84906 * 179.78933 * 19 18 16 21 21 C 1.38360 * 120.14659 * 0.49215 * 20 19 18 22 22 C 1.50688 * 119.85523 * 179.72099 * 21 20 19 23 23 C 1.53779 * 113.61717 * 39.15576 * 22 21 20 24 24 C 1.53960 * 87.02121 * 220.04924 * 23 22 21 25 25 C 1.53780 * 87.10947 * 25.36040 * 24 23 22 26 26 C 1.38363 * 120.28629 * 359.73693 * 21 20 19 27 27 C 1.37956 * 120.14933 * 0.02763 * 26 21 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 29 29 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 32 32 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 33 33 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 34 34 H 1.08001 * 120.07861 * 0.02562 * 19 18 16 35 35 H 1.07999 * 119.92593 * 180.22899 * 20 19 18 36 36 H 1.09000 * 112.85263 * 170.35308 * 22 21 20 37 37 H 1.08998 * 113.61533 * 334.56585 * 23 22 21 38 38 H 1.09000 * 113.61618 * 105.46940 * 23 22 21 39 39 H 1.08997 * 113.53206 * 270.80609 * 24 23 22 40 40 H 1.08997 * 113.74115 * 139.94049 * 24 23 22 41 41 H 1.08995 * 113.61115 * 220.09027 * 25 24 23 42 42 H 1.08999 * 113.68908 * 89.20081 * 25 24 23 43 43 H 1.08001 * 119.91869 * 180.02562 * 26 21 20 44 44 H 1.07996 * 120.06946 * 179.97438 * 27 26 21 45 45 H 1.09002 * 113.61445 * 139.98212 * 28 13 12 46 46 H 1.09002 * 113.61408 * 270.79943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1305 -6.4023 0.9530 15 7 3.1228 -6.3275 0.1765 16 6 3.5058 -7.4637 0.7918 17 8 2.7924 -7.9672 1.6374 18 6 4.7938 -8.0978 0.4382 19 6 5.6125 -7.5254 -0.5365 20 6 6.8152 -8.1198 -0.8586 21 6 7.2055 -9.2863 -0.2251 22 6 8.5175 -9.9333 -0.5865 23 6 9.6537 -8.9267 -0.8328 24 6 10.0890 -9.8268 -2.0036 25 6 8.6303 -10.3086 -2.0735 26 6 6.3962 -9.8613 0.7387 27 6 5.1934 -9.2745 1.0736 28 6 1.2597 -4.8285 -0.5971 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 1.1221 -4.1590 1.9401 32 1 2.9275 -4.3559 1.9127 33 1 3.6922 -5.9256 -0.4981 34 1 5.3071 -6.6172 -1.0347 35 1 7.4514 -7.6759 -1.6100 36 1 8.7907 -10.7431 0.0901 37 1 9.3049 -7.9424 -1.1450 38 1 10.3805 -8.8817 -0.0218 39 1 10.7932 -10.6068 -1.7143 40 1 10.4090 -9.2738 -2.8867 41 1 8.5323 -11.3775 -2.2628 42 1 8.0001 -9.7038 -2.7255 43 1 6.7069 -10.7717 1.2297 44 1 4.5625 -9.7247 1.8256 45 1 1.5905 -5.1205 -1.5938 46 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020216414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:47 Heat of formation + Delta-G solvation = 36.054864 kcal Electronic energy + Delta-G solvation = -24780.321765 eV Core-core repulsion = 21249.995642 eV Total energy + Delta-G solvation = -3530.326123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64795 -39.76562 -38.30197 -37.32073 -34.10868 -32.85897 -31.42705 -31.14835 -29.80566 -26.41978 -26.03005 -25.12621 -24.56640 -23.10433 -22.94810 -22.04733 -20.69695 -19.49736 -19.00435 -18.09412 -17.09594 -16.75733 -15.90596 -15.76829 -15.14994 -15.11826 -14.79104 -14.71343 -14.25429 -13.89020 -13.73227 -13.60848 -13.46044 -13.13458 -12.87331 -12.65257 -12.32818 -12.31026 -11.99464 -11.85641 -11.64602 -11.44276 -10.98905 -10.92821 -10.85003 -10.79611 -10.63202 -10.33157 -10.20640 -9.94121 -9.85817 -9.57427 -9.24147 -9.02007 -8.91507 -8.72931 -6.99610 -5.81433 -3.10443 0.63061 1.12565 2.76494 3.18688 3.40555 3.46202 3.48510 3.66143 4.16408 4.19234 4.30998 4.50915 4.56239 4.56726 4.62625 4.68612 4.83967 5.02231 5.09339 5.12317 5.21240 5.27469 5.32475 5.36739 5.43512 5.48051 5.50118 5.53997 5.57194 5.70515 5.76477 5.85753 5.90488 5.97260 6.05429 6.09144 6.19429 6.24784 6.31152 6.31925 6.49620 6.61223 6.64603 6.69068 7.07178 7.58880 7.66426 8.26262 8.36883 9.48277 10.05585 10.40040 11.40908 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002391 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.800853 B =11706.741219 C =12989.646435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.097 0.903 15 N -0.701 5.701 16 C 0.557 3.443 17 O -0.541 6.541 18 C -0.134 4.134 19 C -0.082 4.082 20 C -0.125 4.125 21 C -0.049 4.049 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.144 4.144 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.058 4.058 28 C -0.159 4.159 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.892 -22.660 -3.768 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.055 3.945 11 H 0.091 0.909 12 C -0.218 4.218 13 C 0.010 3.990 14 H 0.115 0.885 15 N -0.351 5.351 16 C 0.345 3.655 17 O -0.420 6.420 18 C -0.138 4.138 19 C -0.101 4.101 20 C -0.143 4.143 21 C -0.049 4.049 22 C -0.097 4.097 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.168 4.168 26 C -0.144 4.144 27 C -0.077 4.077 28 C -0.199 4.199 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.082 0.918 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.472 -22.809 -3.185 28.908 hybrid contribution 0.357 1.192 -0.228 1.265 sum 17.830 -21.618 -3.413 28.229 Atomic orbital electron populations 1.69668 1.05139 1.25675 1.57426 1.24776 0.95540 0.97825 1.02772 0.86117 0.78785 0.84057 0.77214 1.20532 1.21831 1.21813 1.19332 0.91078 0.84205 1.42945 0.91071 1.42404 1.05788 0.99842 1.86931 1.21644 0.95014 0.85194 0.92697 0.90911 1.24343 1.02060 0.95190 1.00254 1.21841 0.84819 0.94114 0.98241 0.88504 1.45632 1.22177 1.25369 1.41964 1.18264 0.85558 0.80438 0.81259 1.90757 1.54794 1.63766 1.32639 1.19999 0.95758 0.97905 1.00093 1.21338 0.93902 0.99099 0.95743 1.20919 0.96558 0.95933 1.00851 1.19945 0.95434 0.94546 0.95017 1.21620 0.91848 0.98646 0.97540 1.23079 0.97399 0.98058 0.98670 1.22872 0.96652 0.99644 0.98955 1.22988 0.96959 1.01625 0.95261 1.21029 0.94480 1.00547 0.98360 1.21271 0.95527 0.93326 0.97536 1.23865 1.01679 0.97196 0.97158 0.93466 0.77986 0.89518 0.92390 0.76528 0.85421 0.85425 0.88360 0.89512 0.91175 0.90138 0.91215 0.91246 0.89693 0.85521 0.84656 0.91766 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.54 5.40 -52.54 -0.28 -17.82 16 10 C 0.17 3.19 4.37 -67.02 -0.29 2.90 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 C -0.18 -3.15 7.68 -25.82 -0.20 -3.34 16 13 C 0.12 1.78 4.32 -67.12 -0.29 1.49 16 14 H 0.10 1.58 7.47 -51.93 -0.39 1.19 16 15 N -0.70 -9.49 5.21 -53.96 -0.28 -9.77 16 16 C 0.56 8.17 7.77 -12.33 -0.10 8.07 16 17 O -0.54 -9.78 15.95 5.32 0.08 -9.69 16 18 C -0.13 -1.60 5.87 -104.97 -0.62 -2.22 16 19 C -0.08 -0.79 9.54 -39.18 -0.37 -1.17 16 20 C -0.12 -1.05 8.51 -39.64 -0.34 -1.38 16 21 C -0.05 -0.40 5.30 -104.54 -0.55 -0.96 16 22 C -0.08 -0.49 3.97 -90.97 -0.36 -0.85 16 23 C -0.13 -0.77 7.47 -25.83 -0.19 -0.97 16 24 C -0.14 -0.72 8.09 -25.82 -0.21 -0.93 16 25 C -0.13 -0.74 7.54 -25.92 -0.20 -0.93 16 26 C -0.13 -1.11 9.69 -39.64 -0.38 -1.50 16 27 C -0.06 -0.63 9.60 -39.19 -0.38 -1.01 16 28 C -0.16 -2.52 7.57 -25.92 -0.20 -2.72 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.39 10.10 7.92 -40.82 -0.32 9.78 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 4.48 6.74 -40.82 -0.28 4.21 16 34 H 0.13 1.02 6.41 -52.49 -0.34 0.68 16 35 H 0.13 0.84 6.70 -52.49 -0.35 0.48 16 36 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.09 0.51 6.38 -51.93 -0.33 0.18 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.50 7.63 -51.93 -0.40 0.10 16 43 H 0.13 0.85 8.04 -52.49 -0.42 0.42 16 44 H 0.14 1.51 7.65 -52.49 -0.40 1.10 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -32.29 375.64 -11.03 -43.32 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.99 Total: 11.16 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -4.92 Total: -12.82 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.16 Total: -54.78 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.29 -11.03 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020216414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.379 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds