Wall clock time and date at job start Tue Mar 31 2020 10:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47162 * 300.00219 * 3 2 1 6 6 H 1.48495 * 109.47458 * 60.00312 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.09001 * 113.61250 * 220.08565 * 13 12 10 15 15 N 1.46501 * 113.61142 * 89.18830 * 13 12 10 16 16 C 1.34769 * 120.00014 * 107.50467 * 15 13 12 17 17 O 1.21557 * 120.00118 * 359.97438 * 16 15 13 18 18 C 1.47851 * 120.00172 * 179.97438 * 16 15 13 19 19 C 1.39573 * 120.13954 * 359.71951 * 18 16 15 20 20 C 1.37964 * 119.84906 * 179.78933 * 19 18 16 21 21 C 1.38360 * 120.14659 * 0.49215 * 20 19 18 22 22 C 1.50688 * 119.85523 * 179.72099 * 21 20 19 23 23 C 1.53779 * 113.61717 * 39.15576 * 22 21 20 24 24 C 1.53960 * 87.02121 * 220.04924 * 23 22 21 25 25 C 1.53780 * 87.10947 * 25.36040 * 24 23 22 26 26 C 1.38363 * 120.28629 * 359.73693 * 21 20 19 27 27 C 1.37956 * 120.14933 * 0.02763 * 26 21 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 29 29 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 31 31 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 32 32 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 33 33 H 0.97001 * 119.99973 * 287.49325 * 15 13 12 34 34 H 1.08001 * 120.07861 * 0.02562 * 19 18 16 35 35 H 1.07999 * 119.92593 * 180.22899 * 20 19 18 36 36 H 1.09000 * 112.85263 * 170.35308 * 22 21 20 37 37 H 1.08998 * 113.61533 * 334.56585 * 23 22 21 38 38 H 1.09000 * 113.61618 * 105.46940 * 23 22 21 39 39 H 1.08997 * 113.53206 * 270.80609 * 24 23 22 40 40 H 1.08997 * 113.74115 * 139.94049 * 24 23 22 41 41 H 1.08995 * 113.61115 * 220.09027 * 25 24 23 42 42 H 1.08999 * 113.68908 * 89.20081 * 25 24 23 43 43 H 1.08001 * 119.91869 * 180.02562 * 26 21 20 44 44 H 1.07996 * 120.06946 * 179.97438 * 27 26 21 45 45 H 1.09002 * 113.61445 * 139.98212 * 28 13 12 46 46 H 1.09002 * 113.61408 * 270.79943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 1.1305 -6.4023 0.9530 15 7 3.1228 -6.3275 0.1765 16 6 3.5058 -7.4637 0.7918 17 8 2.7924 -7.9672 1.6374 18 6 4.7938 -8.0978 0.4382 19 6 5.6125 -7.5254 -0.5365 20 6 6.8152 -8.1198 -0.8586 21 6 7.2055 -9.2863 -0.2251 22 6 8.5175 -9.9333 -0.5865 23 6 9.6537 -8.9267 -0.8328 24 6 10.0890 -9.8268 -2.0036 25 6 8.6303 -10.3086 -2.0735 26 6 6.3962 -9.8613 0.7387 27 6 5.1934 -9.2745 1.0736 28 6 1.2597 -4.8285 -0.5971 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 1.1221 -4.1590 1.9401 32 1 2.9275 -4.3559 1.9127 33 1 3.6922 -5.9256 -0.4981 34 1 5.3071 -6.6172 -1.0347 35 1 7.4514 -7.6759 -1.6100 36 1 8.7907 -10.7431 0.0901 37 1 9.3049 -7.9424 -1.1450 38 1 10.3805 -8.8817 -0.0218 39 1 10.7932 -10.6068 -1.7143 40 1 10.4090 -9.2738 -2.8867 41 1 8.5323 -11.3775 -2.2628 42 1 8.0001 -9.7038 -2.7255 43 1 6.7069 -10.7717 1.2297 44 1 4.5625 -9.7247 1.8256 45 1 1.5905 -5.1205 -1.5938 46 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020216414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:46 Heat of formation + Delta-G solvation = 17.686013 kcal Electronic energy + Delta-G solvation = -24781.118299 eV Core-core repulsion = 21249.995642 eV Total energy + Delta-G solvation = -3531.122656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57404 -40.66168 -39.43612 -38.20038 -35.81260 -34.32353 -32.45170 -31.90577 -31.51071 -27.22886 -26.56477 -26.44091 -26.23251 -24.25290 -23.69961 -23.32233 -21.65330 -20.42615 -19.98836 -19.32817 -18.84167 -17.60821 -16.98440 -16.74365 -16.25314 -16.10108 -16.07351 -15.66798 -15.62015 -15.28397 -15.00617 -14.48829 -14.19529 -14.13157 -13.87836 -13.58721 -13.42664 -13.33439 -13.29677 -12.91187 -12.85492 -12.74510 -12.60197 -12.11112 -12.10254 -11.86055 -11.76427 -11.45803 -11.28839 -11.21993 -11.16840 -10.98958 -10.85988 -10.14057 -9.96056 -9.63204 -8.99542 -7.95061 -5.23644 -0.18335 0.40871 1.48043 1.48714 1.58525 1.78573 2.06841 2.56417 2.82702 3.36392 3.57084 3.66484 3.70468 3.79771 3.84151 3.89201 3.91798 3.95332 4.01968 4.11517 4.24565 4.30487 4.31074 4.41682 4.47790 4.69837 4.81150 4.83904 4.89363 4.89639 4.91486 4.92550 5.05374 5.11243 5.14343 5.15444 5.18031 5.21877 5.27474 5.32359 5.39051 5.50728 5.53722 5.67436 5.72040 5.92100 6.26966 6.49867 7.14970 7.33279 8.09410 8.32093 9.28351 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.002391 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.800853 B =11706.741219 C =12989.646435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.727 5.727 10 C 0.155 3.845 11 H 0.084 0.916 12 C -0.173 4.173 13 C 0.132 3.868 14 H 0.090 0.910 15 N -0.692 5.692 16 C 0.556 3.444 17 O -0.584 6.584 18 C -0.157 4.157 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.043 4.043 22 C -0.081 4.081 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.072 4.072 28 C -0.141 4.141 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.696 -23.622 -5.057 31.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.045 3.955 11 H 0.102 0.898 12 C -0.215 4.215 13 C 0.026 3.974 14 H 0.108 0.892 15 N -0.343 5.343 16 C 0.346 3.654 17 O -0.465 6.465 18 C -0.160 4.160 19 C -0.099 4.099 20 C -0.143 4.143 21 C -0.043 4.043 22 C -0.099 4.099 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.145 4.145 27 C -0.091 4.091 28 C -0.181 4.181 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.165 0.835 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 20.340 -23.808 -4.496 31.635 hybrid contribution -0.414 1.363 0.181 1.436 sum 19.926 -22.445 -4.316 30.322 Atomic orbital electron populations 1.69822 1.06649 1.25972 1.59602 1.25585 0.96384 1.01194 1.03843 0.85090 0.78368 0.79890 0.76517 1.18814 1.22030 1.22428 1.19738 0.91595 0.85277 1.40777 0.90312 1.42597 1.05463 1.01026 1.87291 1.21973 0.95657 0.83999 0.93911 0.89801 1.24201 1.01235 0.96529 0.99571 1.21538 0.85621 0.93008 0.97243 0.89163 1.45504 1.21597 1.25096 1.42083 1.18736 0.86134 0.80165 0.80383 1.90730 1.56280 1.64918 1.34565 1.19860 0.95158 0.98875 1.02121 1.21520 0.93940 0.99525 0.94955 1.21200 0.96217 0.95854 1.01017 1.20262 0.95909 0.94208 0.93958 1.21728 0.90842 0.99072 0.98227 1.23106 0.97174 0.98005 0.99099 1.22864 0.96389 0.99613 0.98771 1.22996 0.97381 1.01929 0.94518 1.21256 0.93622 1.01144 0.98503 1.21326 0.96460 0.93527 0.97740 1.23676 1.01087 0.94988 0.98347 0.94070 0.79349 0.91061 0.92726 0.74945 0.83826 0.83260 0.87417 0.89543 0.90980 0.89424 0.90842 0.90825 0.89901 0.83480 0.85770 0.89392 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.17 9.97 84.03 0.84 -12.34 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -35.83 5.40 -320.15 -1.73 -37.56 16 10 C 0.15 5.78 4.37 45.58 0.20 5.98 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.17 -6.16 7.68 31.18 0.24 -5.93 16 13 C 0.13 3.99 4.32 45.52 0.20 4.19 16 14 H 0.09 2.93 7.47 -2.39 -0.02 2.91 16 15 N -0.69 -17.92 5.21 -442.90 -2.31 -20.23 16 16 C 0.56 16.16 7.77 86.79 0.67 16.84 16 17 O -0.58 -21.52 15.95 -3.89 -0.06 -21.59 16 18 C -0.16 -3.63 5.87 -20.09 -0.12 -3.75 16 19 C -0.08 -1.40 9.54 22.53 0.21 -1.18 16 20 C -0.13 -1.77 8.51 22.23 0.19 -1.58 16 21 C -0.04 -0.60 5.30 -19.81 -0.10 -0.71 16 22 C -0.08 -0.78 3.97 -11.02 -0.04 -0.82 16 23 C -0.14 -1.19 7.47 31.18 0.23 -0.95 16 24 C -0.14 -1.00 8.09 31.18 0.25 -0.74 16 25 C -0.13 -1.11 7.54 31.12 0.23 -0.87 16 26 C -0.13 -2.04 9.69 22.23 0.22 -1.83 16 27 C -0.07 -1.55 9.60 22.52 0.22 -1.33 16 28 C -0.14 -4.30 7.57 31.12 0.24 -4.06 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 19.94 7.92 -92.71 -0.73 19.21 16 31 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.41 8.39 6.74 -92.71 -0.62 7.76 16 34 H 0.14 1.90 6.41 -2.91 -0.02 1.89 16 35 H 0.15 1.45 6.70 -2.91 -0.02 1.43 16 36 H 0.11 0.86 8.08 -2.39 -0.02 0.85 16 37 H 0.09 0.76 6.38 -2.39 -0.02 0.74 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.75 7.63 -2.39 -0.02 0.73 16 43 H 0.15 1.67 8.04 -2.91 -0.02 1.64 16 44 H 0.12 2.87 7.65 -2.91 -0.02 2.85 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.09 2.82 8.12 -2.39 -0.02 2.80 16 Total: -1.00 -69.94 375.64 1.99 -67.95 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.36 Total: 35.63 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.14 Total: -13.06 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -3.76 Total: -116.63 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.94 1.99 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020216414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.639 kcal (2) G-P(sol) polarization free energy of solvation -69.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds