Wall clock time and date at job start Tue Mar 31 2020 11:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 115.56246 * 2 1 4 4 C 1.37978 * 120.07474 * 261.52618 * 3 2 1 5 5 C 1.38345 * 120.14293 * 179.72370 * 4 3 2 6 6 C 1.38376 * 120.29321 * 0.54403 * 5 4 3 7 7 C 1.37937 * 120.14688 * 359.73107 * 6 5 4 8 8 C 1.39563 * 120.07226 * 81.79172 * 3 2 1 9 9 C 1.47841 * 120.14491 * 359.97438 * 8 3 2 10 10 O 1.21550 * 120.00065 * 353.98692 * 9 8 3 11 11 N 1.34778 * 119.99872 * 173.98492 * 9 8 3 12 12 C 1.46500 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.09009 * 112.84699 * 334.66590 * 12 11 9 14 14 C 1.53775 * 113.61759 * 105.86122 * 12 11 9 15 15 C 1.54047 * 86.98628 * 89.16585 * 14 12 11 16 16 H 1.09007 * 113.68676 * 270.87918 * 15 14 12 17 17 N 1.46497 * 113.62235 * 139.97958 * 15 14 12 18 18 C 1.36937 * 119.99862 * 107.50393 * 17 15 14 19 19 H 1.08004 * 120.00487 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00318 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47006 * 59.99939 * 22 20 18 24 24 H 1.48498 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47124 * 300.00264 * 22 20 18 26 26 C 1.53772 * 113.61702 * 203.47455 * 12 11 9 27 27 C 1.52998 * 117.49754 * 145.68288 * 2 1 3 28 28 C 1.53004 * 60.02994 * 107.50487 * 27 2 1 29 29 H 1.08995 * 109.46883 * 268.55330 * 1 2 3 30 30 H 1.08999 * 109.46582 * 28.54878 * 1 2 3 31 31 H 1.08993 * 109.46688 * 148.54835 * 1 2 3 32 32 H 1.07992 * 119.92640 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.85132 * 180.25615 * 5 4 3 34 34 H 1.07997 * 119.92824 * 179.74743 * 6 5 4 35 35 H 1.07999 * 120.07395 * 180.02562 * 7 6 5 36 36 H 0.96999 * 120.00253 * 359.97438 * 11 9 8 37 37 H 1.09005 * 113.61411 * 203.66639 * 14 12 11 38 38 H 1.09000 * 113.61254 * 334.57036 * 14 12 11 39 39 H 0.96998 * 120.00256 * 287.50559 * 17 15 14 40 40 H 0.96997 * 120.00549 * 179.97438 * 21 20 18 41 41 H 1.09005 * 113.61794 * 25.42488 * 26 12 11 42 42 H 1.08997 * 113.61974 * 156.33178 * 26 12 11 43 43 H 1.09007 * 117.49914 * 0.02562 * 27 2 1 44 44 H 1.09001 * 117.50356 * 215.00331 * 27 2 1 45 45 H 1.08995 * 117.49825 * 107.47701 * 28 27 2 46 46 H 1.09003 * 117.50114 * 252.47442 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 6 2.6374 1.9073 -1.1810 5 6 3.2294 3.1577 -1.1835 6 6 3.3775 3.8622 -0.0017 7 6 2.9300 3.3236 1.1866 8 6 2.3265 2.0648 1.1954 9 6 1.8439 1.4816 2.4653 10 8 1.2218 0.4374 2.4569 11 7 2.0938 2.1078 3.6323 12 6 1.6160 1.5297 4.8908 13 1 0.7450 0.8879 4.7580 14 6 2.7294 0.8897 5.7367 15 6 2.9216 2.2743 6.3840 16 1 3.6340 2.9091 5.8569 17 7 3.1684 2.2185 7.8270 18 6 4.4186 2.4840 8.3185 19 1 5.2227 2.7349 7.6425 20 6 4.6523 2.4316 9.6858 21 7 3.6722 2.1274 10.5098 22 14 6.3576 2.7945 10.3565 23 1 6.7555 4.1739 9.9771 24 1 6.3436 2.6733 11.8365 25 1 7.3292 1.8253 9.7891 26 6 1.4550 2.5605 6.0204 27 6 2.2365 -1.1209 0.7651 28 6 2.2372 -1.1216 -0.7649 29 1 -0.3633 -0.0259 1.0273 30 1 -0.3632 0.9027 -0.4911 31 1 -0.3632 -0.8766 -0.5362 32 1 2.5291 1.3606 -2.1060 33 1 3.5818 3.5838 -2.1112 34 1 3.8442 4.8361 -0.0099 35 1 3.0457 3.8747 2.1082 36 1 2.5906 2.9409 3.6391 37 1 2.3689 0.1298 6.4301 38 1 3.5864 0.5573 5.1509 39 1 2.4462 1.9935 8.4342 40 1 3.8356 2.0904 11.4652 41 1 1.2839 3.5762 5.6636 42 1 0.7468 2.2567 6.7912 43 1 1.6112 -1.8586 1.2682 44 1 3.1714 -0.8750 1.2688 45 1 3.1724 -0.8756 -1.2678 46 1 1.6128 -1.8597 -1.2682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020575244.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:54 Heat of formation + Delta-G solvation = 51.579319 kcal Electronic energy + Delta-G solvation = -25854.014732 eV Core-core repulsion = 22324.361799 eV Total energy + Delta-G solvation = -3529.652932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73072 -39.17684 -37.56670 -37.25786 -34.02010 -32.77271 -31.16803 -30.89550 -29.74603 -28.44867 -25.12787 -24.98142 -23.94306 -23.33386 -22.36564 -22.07607 -20.67313 -19.57239 -18.85459 -17.83039 -17.08386 -16.30943 -15.90397 -15.26463 -15.14498 -14.88731 -14.81544 -14.60836 -14.31040 -14.03831 -13.76538 -13.40743 -12.98692 -12.71967 -12.61762 -12.44686 -12.35060 -11.98821 -11.84946 -11.81346 -11.61405 -11.46572 -11.12064 -10.89910 -10.78907 -10.42795 -10.28808 -10.24544 -9.99768 -9.91587 -9.55855 -9.35685 -9.19445 -8.98851 -8.90143 -8.66855 -6.99137 -5.80773 -3.09847 0.69072 1.09740 2.86753 3.23515 3.41563 3.46212 3.47165 3.68475 3.75212 4.37585 4.56748 4.59907 4.62820 4.77106 4.83325 4.93374 5.03751 5.09117 5.18912 5.21447 5.23949 5.44620 5.48995 5.53115 5.59731 5.64402 5.76847 5.85461 5.86708 5.88145 5.92585 6.03277 6.09409 6.13375 6.17325 6.20997 6.24991 6.28755 6.32257 6.35124 6.55352 6.62547 6.66036 6.70915 7.09487 7.64922 7.66005 8.35707 8.37704 9.48819 10.06275 10.40684 11.41514 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002827 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.052691 B = 9903.321437 C =10474.059608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.076 4.076 3 C 0.009 3.991 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.131 4.131 7 C -0.087 4.087 8 C -0.125 4.125 9 C 0.553 3.447 10 O -0.518 6.518 11 N -0.705 5.705 12 C 0.119 3.881 13 H 0.096 0.904 14 C -0.175 4.175 15 C 0.166 3.834 16 H 0.072 0.928 17 N -0.712 5.712 18 C -0.246 4.246 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.160 4.160 27 C -0.126 4.126 28 C -0.189 4.189 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.397 0.603 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 0.475 -25.569 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C 0.008 3.992 4 C -0.141 4.141 5 C -0.115 4.115 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.128 4.128 9 C 0.340 3.660 10 O -0.395 6.395 11 N -0.356 5.356 12 C 0.014 3.986 13 H 0.114 0.886 14 C -0.218 4.218 15 C 0.054 3.946 16 H 0.090 0.910 17 N -0.350 5.350 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.199 4.199 27 C -0.163 4.163 28 C -0.226 4.226 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.232 0.768 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.815 -0.226 -25.452 25.905 hybrid contribution 1.106 0.639 0.660 1.438 sum -3.709 0.413 -24.792 25.071 Atomic orbital electron populations 1.21278 0.91007 1.00720 1.03120 1.19886 0.94764 0.87049 1.05892 1.19178 0.94467 0.93989 0.91593 1.20996 0.99549 0.95864 0.97657 1.21322 0.97476 0.94427 0.98306 1.21105 1.00907 1.00475 0.92374 1.21365 0.96180 0.94263 0.98730 1.19900 1.03316 0.95817 0.93729 1.18178 0.80065 0.84474 0.83304 1.90752 1.39814 1.22053 1.86882 1.45664 1.57376 1.26746 1.05772 1.21782 0.98257 0.96729 0.81842 0.88639 1.24335 0.97587 1.01256 0.98578 1.21670 0.92723 0.93548 0.86645 0.90961 1.42391 1.10326 1.82015 1.00254 1.19247 0.87873 1.39802 0.90810 0.91191 1.24763 0.97627 1.02340 0.96053 1.69641 1.30854 1.54909 1.02590 0.86269 0.83952 0.78097 0.77871 1.21226 1.21648 1.21204 1.23856 1.00917 0.98076 0.97092 1.22752 1.01458 0.99912 0.92216 1.23370 1.02107 1.01036 0.96044 0.90391 0.93167 0.92839 0.85457 0.85644 0.85422 0.85429 0.76784 0.89644 0.92481 0.78004 0.93354 0.91831 0.89021 0.88535 0.89694 0.89303 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.57 37.16 0.36 -0.80 16 2 C -0.08 -0.86 1.16 -155.62 -0.18 -1.04 16 3 C 0.01 0.10 4.98 -104.22 -0.52 -0.42 16 4 C -0.12 -1.13 9.35 -39.64 -0.37 -1.50 16 5 C -0.10 -0.78 10.04 -39.49 -0.40 -1.17 16 6 C -0.13 -1.08 10.03 -39.64 -0.40 -1.48 16 7 C -0.09 -0.84 9.53 -39.18 -0.37 -1.22 16 8 C -0.12 -1.48 5.86 -104.97 -0.62 -2.10 16 9 C 0.55 7.61 7.59 -12.33 -0.09 7.52 16 10 O -0.52 -8.13 10.38 5.32 0.06 -8.07 16 11 N -0.70 -9.22 5.21 -53.97 -0.28 -9.50 16 12 C 0.12 1.78 4.29 -67.13 -0.29 1.50 16 13 H 0.10 1.49 7.50 -51.92 -0.39 1.10 16 14 C -0.18 -3.08 7.70 -25.78 -0.20 -3.28 16 15 C 0.17 3.18 4.37 -66.98 -0.29 2.89 16 16 H 0.07 1.35 8.10 -51.92 -0.42 0.93 16 17 N -0.71 -17.56 5.40 -52.50 -0.28 -17.84 16 18 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 19 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 22 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.16 -2.50 7.57 -25.92 -0.20 -2.70 16 27 C -0.13 -1.53 7.45 -26.73 -0.20 -1.73 16 28 C -0.19 -1.84 9.53 -26.69 -0.25 -2.10 16 29 H 0.08 1.01 6.47 -51.93 -0.34 0.68 16 30 H 0.05 0.52 8.03 -51.93 -0.42 0.11 16 31 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 32 H 0.13 0.96 7.96 -52.49 -0.42 0.54 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.13 1.03 6.45 -52.49 -0.34 0.69 16 36 H 0.40 4.44 6.78 -40.82 -0.28 4.16 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.39 10.10 7.92 -40.82 -0.32 9.77 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 43 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 0.80 8.04 -51.93 -0.42 0.39 16 46 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -31.12 373.66 -10.53 -41.65 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.09 Total: 13.16 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -4.27 Total: -14.97 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.16 Total: -54.56 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.06 Total: -8.07 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.12 -10.53 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020575244.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.232 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds