Wall clock time and date at job start Tue Mar 31 2020 11:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 115.56246 * 2 1 4 4 C 1.37978 * 120.07474 * 261.52618 * 3 2 1 5 5 C 1.38345 * 120.14293 * 179.72370 * 4 3 2 6 6 C 1.38376 * 120.29321 * 0.54403 * 5 4 3 7 7 C 1.37937 * 120.14688 * 359.73107 * 6 5 4 8 8 C 1.39563 * 120.07226 * 81.79172 * 3 2 1 9 9 C 1.47841 * 120.14491 * 359.97438 * 8 3 2 10 10 O 1.21550 * 120.00065 * 353.98692 * 9 8 3 11 11 N 1.34778 * 119.99872 * 173.98492 * 9 8 3 12 12 C 1.46500 * 120.00124 * 180.02562 * 11 9 8 13 13 H 1.09009 * 112.84699 * 334.66590 * 12 11 9 14 14 C 1.53775 * 113.61759 * 105.86122 * 12 11 9 15 15 C 1.54047 * 86.98628 * 89.16585 * 14 12 11 16 16 H 1.09007 * 113.68676 * 270.87918 * 15 14 12 17 17 N 1.46497 * 113.62235 * 139.97958 * 15 14 12 18 18 C 1.36937 * 119.99862 * 107.50393 * 17 15 14 19 19 H 1.08004 * 120.00487 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99882 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00318 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47006 * 59.99939 * 22 20 18 24 24 H 1.48498 * 109.47252 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47124 * 300.00264 * 22 20 18 26 26 C 1.53772 * 113.61702 * 203.47455 * 12 11 9 27 27 C 1.52998 * 117.49754 * 145.68288 * 2 1 3 28 28 C 1.53004 * 60.02994 * 107.50487 * 27 2 1 29 29 H 1.08995 * 109.46883 * 268.55330 * 1 2 3 30 30 H 1.08999 * 109.46582 * 28.54878 * 1 2 3 31 31 H 1.08993 * 109.46688 * 148.54835 * 1 2 3 32 32 H 1.07992 * 119.92640 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.85132 * 180.25615 * 5 4 3 34 34 H 1.07997 * 119.92824 * 179.74743 * 6 5 4 35 35 H 1.07999 * 120.07395 * 180.02562 * 7 6 5 36 36 H 0.96999 * 120.00253 * 359.97438 * 11 9 8 37 37 H 1.09005 * 113.61411 * 203.66639 * 14 12 11 38 38 H 1.09000 * 113.61254 * 334.57036 * 14 12 11 39 39 H 0.96998 * 120.00256 * 287.50559 * 17 15 14 40 40 H 0.96997 * 120.00549 * 179.97438 * 21 20 18 41 41 H 1.09005 * 113.61794 * 25.42488 * 26 12 11 42 42 H 1.08997 * 113.61974 * 156.33178 * 26 12 11 43 43 H 1.09007 * 117.49914 * 0.02562 * 27 2 1 44 44 H 1.09001 * 117.50356 * 215.00331 * 27 2 1 45 45 H 1.08995 * 117.49825 * 107.47701 * 28 27 2 46 46 H 1.09003 * 117.50114 * 252.47442 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1803 1.3595 0.0000 4 6 2.6374 1.9073 -1.1810 5 6 3.2294 3.1577 -1.1835 6 6 3.3775 3.8622 -0.0017 7 6 2.9300 3.3236 1.1866 8 6 2.3265 2.0648 1.1954 9 6 1.8439 1.4816 2.4653 10 8 1.2218 0.4374 2.4569 11 7 2.0938 2.1078 3.6323 12 6 1.6160 1.5297 4.8908 13 1 0.7450 0.8879 4.7580 14 6 2.7294 0.8897 5.7367 15 6 2.9216 2.2743 6.3840 16 1 3.6340 2.9091 5.8569 17 7 3.1684 2.2185 7.8270 18 6 4.4186 2.4840 8.3185 19 1 5.2227 2.7349 7.6425 20 6 4.6523 2.4316 9.6858 21 7 3.6722 2.1274 10.5098 22 14 6.3576 2.7945 10.3565 23 1 6.7555 4.1739 9.9771 24 1 6.3436 2.6733 11.8365 25 1 7.3292 1.8253 9.7891 26 6 1.4550 2.5605 6.0204 27 6 2.2365 -1.1209 0.7651 28 6 2.2372 -1.1216 -0.7649 29 1 -0.3633 -0.0259 1.0273 30 1 -0.3632 0.9027 -0.4911 31 1 -0.3632 -0.8766 -0.5362 32 1 2.5291 1.3606 -2.1060 33 1 3.5818 3.5838 -2.1112 34 1 3.8442 4.8361 -0.0099 35 1 3.0457 3.8747 2.1082 36 1 2.5906 2.9409 3.6391 37 1 2.3689 0.1298 6.4301 38 1 3.5864 0.5573 5.1509 39 1 2.4462 1.9935 8.4342 40 1 3.8356 2.0904 11.4652 41 1 1.2839 3.5762 5.6636 42 1 0.7468 2.2567 6.7912 43 1 1.6112 -1.8586 1.2682 44 1 3.1714 -0.8750 1.2688 45 1 3.1724 -0.8756 -1.2678 46 1 1.6128 -1.8597 -1.2682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020575244.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:53 Heat of formation + Delta-G solvation = 34.169975 kcal Electronic energy + Delta-G solvation = -25854.769657 eV Core-core repulsion = 22324.361799 eV Total energy + Delta-G solvation = -3530.407858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67341 -40.33143 -38.72999 -38.08067 -35.73746 -34.17400 -32.30909 -31.62597 -31.35645 -29.31336 -26.64317 -26.47851 -25.17100 -24.11961 -23.64776 -23.15683 -21.66592 -20.52777 -20.14360 -19.18923 -18.62788 -17.36173 -16.87687 -16.73001 -16.14231 -15.99592 -15.78399 -15.70818 -15.47626 -15.33857 -15.11131 -14.65307 -14.18649 -13.76686 -13.74667 -13.43257 -13.34072 -13.28708 -13.18550 -13.09451 -12.77522 -12.59259 -12.46561 -12.31858 -12.21529 -11.89308 -11.84251 -11.73550 -11.30998 -11.18125 -10.92965 -10.84106 -10.30143 -10.02821 -9.84474 -9.64969 -8.99494 -7.95276 -5.23984 -0.07938 0.40790 1.47274 1.50026 1.56093 1.95111 2.16821 2.56197 2.87415 2.91733 3.35996 3.60443 3.68156 3.76945 3.86006 3.94004 3.96309 3.99829 4.09431 4.21629 4.25943 4.31140 4.32127 4.49783 4.54045 4.72635 4.77524 4.83731 4.90348 4.90805 4.93242 4.93852 5.00997 5.07851 5.12599 5.18383 5.20938 5.24498 5.28895 5.38261 5.45351 5.50130 5.53117 5.57141 5.74757 5.97481 6.26605 6.61571 7.31186 7.32849 8.09299 8.32046 9.27846 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019318 B = 0.002827 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.052691 B = 9903.321437 C =10474.059608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.080 4.080 3 C -0.009 4.009 4 C -0.126 4.126 5 C -0.089 4.089 6 C -0.131 4.131 7 C -0.092 4.092 8 C -0.149 4.149 9 C 0.548 3.452 10 O -0.543 6.543 11 N -0.699 5.699 12 C 0.140 3.860 13 H 0.091 0.909 14 C -0.171 4.171 15 C 0.153 3.847 16 H 0.081 0.919 17 N -0.727 5.727 18 C -0.246 4.246 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.280 1.280 26 C -0.142 4.142 27 C -0.146 4.146 28 C -0.164 4.164 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.408 0.592 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 2.051 -28.566 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 C -0.010 4.010 4 C -0.144 4.144 5 C -0.107 4.107 6 C -0.149 4.149 7 C -0.110 4.110 8 C -0.152 4.152 9 C 0.337 3.663 10 O -0.422 6.422 11 N -0.351 5.351 12 C 0.034 3.966 13 H 0.109 0.891 14 C -0.214 4.214 15 C 0.043 3.957 16 H 0.099 0.901 17 N -0.364 5.364 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.801 3.199 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.206 1.206 26 C -0.182 4.182 27 C -0.183 4.183 28 C -0.201 4.201 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.836 1.372 -28.519 28.809 hybrid contribution 0.799 0.146 1.459 1.670 sum -3.037 1.518 -27.060 27.272 Atomic orbital electron populations 1.21218 0.91178 1.01597 1.01724 1.19950 0.94776 0.87516 1.05801 1.19341 0.95325 0.94039 0.92331 1.21239 0.99179 0.96572 0.97433 1.21734 0.95807 0.93636 0.99516 1.21473 1.00119 1.01465 0.91809 1.21580 0.95788 0.93516 1.00155 1.19838 1.05386 0.97172 0.92781 1.18624 0.79502 0.84147 0.84049 1.90748 1.40926 1.23201 1.87314 1.45552 1.57530 1.27111 1.04938 1.21432 0.96830 0.95975 0.82357 0.89081 1.24179 0.98452 1.00055 0.98678 1.22000 0.95175 0.94528 0.83954 0.90118 1.42584 1.09217 1.82329 1.02313 1.19670 0.89065 1.37971 0.91116 0.90463 1.25571 1.01233 1.03405 0.96562 1.69801 1.32827 1.57038 1.02384 0.85234 0.79757 0.78322 0.76595 1.20065 1.22312 1.20608 1.23664 0.98078 0.99527 0.96902 1.22590 1.00770 1.00962 0.94007 1.23420 1.02437 1.00130 0.94067 0.92916 0.92661 0.91486 0.83709 0.82527 0.82777 0.84207 0.75510 0.91267 0.93053 0.79364 0.94003 0.89585 0.89440 0.89952 0.91609 0.88133 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 9.57 71.98 0.69 -1.50 16 2 C -0.08 -1.78 1.16 -52.90 -0.06 -1.84 16 3 C -0.01 -0.20 4.98 -19.61 -0.10 -0.30 16 4 C -0.13 -1.97 9.35 22.23 0.21 -1.76 16 5 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16 6 C -0.13 -1.72 10.03 22.23 0.22 -1.49 16 7 C -0.09 -1.59 9.53 22.53 0.21 -1.38 16 8 C -0.15 -3.39 5.86 -20.09 -0.12 -3.51 16 9 C 0.55 15.10 7.59 86.79 0.66 15.76 16 10 O -0.54 -17.58 10.38 -3.87 -0.04 -17.62 16 11 N -0.70 -17.83 5.21 -442.93 -2.31 -20.14 16 12 C 0.14 4.17 4.29 45.51 0.20 4.36 16 13 H 0.09 2.86 7.50 -2.38 -0.02 2.85 16 14 C -0.17 -6.13 7.70 31.21 0.24 -5.89 16 15 C 0.15 5.82 4.37 45.61 0.20 6.02 16 16 H 0.08 2.92 8.10 -2.38 -0.02 2.90 16 17 N -0.73 -36.27 5.40 -320.01 -1.73 -38.00 16 18 C -0.25 -13.56 9.97 84.03 0.84 -12.72 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 21 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 22 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 26 C -0.14 -4.35 7.57 31.12 0.24 -4.11 16 27 C -0.15 -3.64 7.45 30.59 0.23 -3.41 16 28 C -0.16 -2.97 9.53 30.62 0.29 -2.68 16 29 H 0.05 1.42 6.47 -2.39 -0.02 1.40 16 30 H 0.05 1.11 8.03 -2.39 -0.02 1.10 16 31 H 0.07 1.22 7.88 -2.39 -0.02 1.20 16 32 H 0.15 1.68 7.96 -2.91 -0.02 1.65 16 33 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.93 6.45 -2.91 -0.02 1.92 16 36 H 0.41 8.53 6.78 -92.71 -0.63 7.90 16 37 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.37 20.11 7.92 -92.71 -0.73 19.37 16 40 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.09 2.80 8.12 -2.39 -0.02 2.78 16 43 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 1.59 8.04 -2.39 -0.02 1.57 16 46 H 0.11 1.62 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -68.52 373.66 2.50 -66.03 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.37 Total: 40.11 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.63 Total: -19.16 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -3.76 Total: -117.24 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.04 Total: -17.62 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.52 2.50 -66.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020575244.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.197 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds