Wall clock time and date at job start Tue Mar 31 2020 10:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00618 * 2 1 4 4 H 1.48502 * 109.46965 * 270.00020 * 3 2 1 5 5 H 1.48504 * 109.46805 * 29.99515 * 3 2 1 6 6 H 1.48493 * 109.47328 * 149.99702 * 3 2 1 7 7 C 1.38816 * 119.99479 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00168 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99952 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00234 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.90451 * 27.04073 * 10 9 7 12 12 C 1.53776 * 113.61813 * 158.29584 * 10 9 7 13 13 C 1.53781 * 87.17461 * 89.15974 * 12 10 9 14 14 H 1.08999 * 113.61295 * 139.94053 * 13 12 10 15 15 N 1.46501 * 113.61280 * 270.76211 * 13 12 10 16 16 C 1.34776 * 120.00044 * 276.71310 * 15 13 12 17 17 O 1.21555 * 119.99963 * 359.97438 * 16 15 13 18 18 C 1.47844 * 120.00411 * 180.02562 * 16 15 13 19 19 C 1.39581 * 120.14009 * 359.72125 * 18 16 15 20 20 C 1.37953 * 119.84833 * 179.79083 * 19 18 16 21 21 C 1.38365 * 120.14921 * 0.48847 * 20 19 18 22 22 C 1.50700 * 119.85734 * 179.72279 * 21 20 19 23 23 C 1.53780 * 113.61502 * 39.15285 * 22 21 20 24 24 C 1.53953 * 87.02371 * 220.05117 * 23 22 21 25 25 C 1.53779 * 87.10926 * 25.36451 * 24 23 22 26 26 C 1.38356 * 120.29060 * 359.74319 * 21 20 19 27 27 C 1.37963 * 120.14558 * 0.02562 * 26 21 20 28 28 C 1.53776 * 87.07966 * 25.39184 * 13 12 10 29 29 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99754 * 0.02562 * 9 7 2 31 31 H 1.09004 * 113.61094 * 334.56869 * 12 10 9 32 32 H 1.08993 * 113.61549 * 203.75111 * 12 10 9 33 33 H 0.96997 * 120.00402 * 96.71092 * 15 13 12 34 34 H 1.07995 * 120.07226 * 0.02562 * 19 18 16 35 35 H 1.08005 * 119.92885 * 180.23290 * 20 19 18 36 36 H 1.08992 * 112.85144 * 170.35673 * 22 21 20 37 37 H 1.09005 * 113.61604 * 334.57331 * 23 22 21 38 38 H 1.09003 * 113.61034 * 105.46910 * 23 22 21 39 39 H 1.08997 * 113.53484 * 270.81637 * 24 23 22 40 40 H 1.08998 * 113.74348 * 139.94422 * 24 23 22 41 41 H 1.09004 * 113.61946 * 220.08973 * 25 24 23 42 42 H 1.09003 * 113.61574 * 89.18503 * 25 24 23 43 43 H 1.07998 * 119.93010 * 179.97438 * 26 21 20 44 44 H 1.07996 * 120.07595 * 179.97438 * 27 26 21 45 45 H 1.09000 * 113.61471 * 89.11938 * 28 13 12 46 46 H 1.09007 * 113.61491 * 219.93655 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4701 -2.1376 0.0005 9 7 3.3795 -1.2024 0.0011 10 6 4.1120 -2.4711 0.0011 11 1 3.5497 -3.2855 -0.4558 12 6 5.5539 -2.3501 -0.5194 13 6 5.9711 -2.0503 0.9301 14 1 6.9076 -2.5255 1.2220 15 7 5.9249 -0.6264 1.2715 16 6 6.9629 0.1751 0.9607 17 8 7.9376 -0.2836 0.3976 18 6 6.9167 1.6120 1.3057 19 6 5.7969 2.1428 1.9481 20 6 5.7620 3.4835 2.2712 21 6 6.8293 4.3036 1.9507 22 6 6.7815 5.7686 2.3011 23 6 6.1425 6.0539 3.6704 24 6 5.4607 7.2660 3.0099 25 6 5.5902 6.5130 1.6753 26 6 7.9402 3.7847 1.3097 27 6 7.9900 2.4447 0.9852 28 6 4.7211 -2.8316 1.3683 29 1 -0.4850 0.8401 -0.0004 30 1 3.8645 -0.3624 0.0014 31 1 5.7037 -1.5113 -1.1992 32 1 5.9586 -3.2854 -0.9057 33 1 5.1473 -0.2604 1.7212 34 1 4.9615 1.5046 2.1951 35 1 4.8978 3.8949 2.7716 36 1 7.7372 6.2708 2.1520 37 1 5.4435 5.2832 3.9952 38 1 6.8643 6.3241 4.4412 39 1 6.0554 8.1783 3.0559 40 1 4.4291 7.4165 3.3280 41 1 5.8667 7.1534 0.8376 42 1 4.7399 5.8680 1.4536 43 1 8.7698 4.4302 1.0619 44 1 8.8575 2.0410 0.4845 45 1 4.8970 -3.8994 1.4986 46 1 4.1994 -2.3823 2.2134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022167727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:54 Heat of formation + Delta-G solvation = 25.977576 kcal Electronic energy + Delta-G solvation = -26232.056006 eV Core-core repulsion = 22701.292899 eV Total energy + Delta-G solvation = -3530.763107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67983 -40.77183 -39.49985 -38.24508 -35.62396 -34.41893 -32.73076 -32.05706 -31.90620 -27.32403 -26.60856 -26.50474 -26.14259 -24.47887 -23.81606 -23.13963 -21.44669 -20.77671 -20.04510 -19.50970 -18.97758 -17.60239 -17.04258 -16.77456 -16.45089 -16.26214 -16.10512 -15.84358 -15.55865 -15.35528 -14.98975 -14.78109 -14.43974 -14.15658 -14.01558 -13.79533 -13.54790 -13.37349 -13.19334 -12.96976 -12.92935 -12.81274 -12.58115 -12.22988 -12.02281 -11.94996 -11.81451 -11.51254 -11.33936 -11.25420 -11.13432 -11.00176 -10.95677 -10.12453 -10.03297 -9.69065 -9.33869 -8.04901 -5.38950 -0.25316 0.31923 1.28471 1.37128 1.41860 1.73403 2.08744 2.43584 2.75664 3.24917 3.43801 3.55434 3.61339 3.66074 3.73577 3.83210 3.84364 3.86686 3.93361 4.05421 4.18108 4.19653 4.29451 4.33134 4.40878 4.73926 4.77774 4.78797 4.84665 4.86400 4.86939 4.95217 4.97542 5.00913 5.07393 5.09977 5.18453 5.21166 5.24927 5.26124 5.30853 5.45906 5.57417 5.66358 5.79021 5.85024 6.19817 6.41353 7.04098 7.07982 7.80630 7.99399 9.15875 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004795 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.568875 B = 5837.982818 C = 7783.267374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.941 3.059 4 H -0.296 1.296 5 H -0.291 1.291 6 H -0.237 1.237 7 C -0.230 4.230 8 H 0.063 0.937 9 N -0.734 5.734 10 C 0.147 3.853 11 H 0.068 0.932 12 C -0.156 4.156 13 C 0.125 3.875 14 H 0.097 0.903 15 N -0.703 5.703 16 C 0.556 3.444 17 O -0.571 6.571 18 C -0.162 4.162 19 C -0.092 4.092 20 C -0.133 4.133 21 C -0.042 4.042 22 C -0.076 4.076 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.064 4.064 28 C -0.156 4.156 29 H 0.257 0.743 30 H 0.364 0.636 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.404 0.596 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.158 0.842 44 H 0.135 0.865 45 H 0.122 0.878 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 11.111 7.833 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.769 3.231 4 H -0.224 1.224 5 H -0.217 1.217 6 H -0.161 1.161 7 C -0.361 4.361 8 H 0.081 0.919 9 N -0.377 5.377 10 C 0.038 3.962 11 H 0.086 0.914 12 C -0.196 4.196 13 C 0.020 3.980 14 H 0.115 0.885 15 N -0.354 5.354 16 C 0.345 3.655 17 O -0.452 6.452 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.151 4.151 21 C -0.042 4.042 22 C -0.094 4.094 23 C -0.172 4.172 24 C -0.174 4.174 25 C -0.177 4.177 26 C -0.140 4.140 27 C -0.083 4.083 28 C -0.196 4.196 29 H 0.066 0.934 30 H 0.198 0.802 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.241 0.759 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.176 0.824 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.942 10.674 7.444 22.165 hybrid contribution -0.692 0.843 -0.143 1.100 sum 17.250 11.517 7.302 21.989 Atomic orbital electron populations 1.69867 1.06989 1.26542 1.59589 1.25409 0.95995 1.00820 1.02779 0.85671 0.79367 0.80383 0.77632 1.22378 1.21738 1.16112 1.19085 0.82313 0.93641 1.41075 0.91916 1.42555 1.02395 1.03439 1.89273 1.21486 0.91199 0.88156 0.95395 0.91390 1.23818 0.96729 1.02675 0.96342 1.21884 0.99536 0.80239 0.96354 0.88540 1.45867 1.19932 1.09514 1.60122 1.18592 0.82265 0.86674 0.77977 1.90697 1.33912 1.76866 1.43764 1.19968 0.97772 0.92962 1.05776 1.21503 0.96390 0.96732 0.96428 1.21146 0.99781 0.92687 1.01471 1.20274 0.92928 0.96301 0.94691 1.21749 1.00289 0.89574 0.97801 1.23081 0.99998 0.98454 0.95709 1.22863 1.01482 0.97658 0.95361 1.23029 0.97392 0.99011 0.98266 1.21328 0.99144 0.94400 0.99132 1.21374 0.97042 0.93656 0.96264 1.23993 0.94780 1.01361 0.99481 0.93380 0.80192 0.93633 0.86216 0.75851 0.85959 0.84414 0.86256 0.90334 0.90028 0.88566 0.91326 0.90432 0.91311 0.82403 0.84690 0.85956 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.64 13.97 21.65 0.30 -61.34 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 3 Si 0.94 44.25 27.74 68.60 1.90 46.15 16 4 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.24 -9.53 4.81 99.48 0.48 -9.05 16 7 C -0.23 -12.72 10.46 84.03 0.88 -11.84 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.73 -33.13 4.84 -320.17 -1.55 -34.68 16 10 C 0.15 5.34 4.56 45.58 0.21 5.55 16 11 H 0.07 2.51 8.12 -2.39 -0.02 2.50 16 12 C -0.16 -4.92 7.61 31.12 0.24 -4.68 16 13 C 0.12 3.73 3.97 45.52 0.18 3.91 16 14 H 0.10 2.69 8.09 -2.39 -0.02 2.67 16 15 N -0.70 -22.71 4.25 -442.91 -1.88 -24.59 16 16 C 0.56 18.96 7.77 86.79 0.67 19.63 16 17 O -0.57 -21.98 16.31 -3.89 -0.06 -22.05 16 18 C -0.16 -4.88 5.87 -20.09 -0.12 -5.00 16 19 C -0.09 -2.61 8.97 22.53 0.20 -2.41 16 20 C -0.13 -3.21 8.51 22.23 0.19 -3.02 16 21 C -0.04 -0.85 5.30 -19.81 -0.10 -0.96 16 22 C -0.08 -1.13 3.97 -11.01 -0.04 -1.18 16 23 C -0.14 -1.85 7.47 31.18 0.23 -1.62 16 24 C -0.14 -1.72 8.09 31.18 0.25 -1.47 16 25 C -0.14 -2.18 7.54 31.12 0.23 -1.95 16 26 C -0.12 -2.49 9.69 22.23 0.22 -2.27 16 27 C -0.06 -1.67 9.60 22.53 0.22 -1.46 16 28 C -0.16 -4.53 7.58 31.18 0.24 -4.29 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.36 16.02 4.31 -92.71 -0.40 15.62 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.40 13.07 5.99 -92.71 -0.56 12.52 16 34 H 0.12 3.55 5.36 -2.91 -0.02 3.54 16 35 H 0.14 2.96 6.70 -2.91 -0.02 2.94 16 36 H 0.12 1.32 8.08 -2.39 -0.02 1.30 16 37 H 0.08 1.21 6.38 -2.38 -0.02 1.19 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.32 7.63 -2.39 -0.02 1.30 16 43 H 0.16 2.17 8.04 -2.91 -0.02 2.15 16 44 H 0.14 3.43 7.65 -2.91 -0.02 3.40 16 45 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.06 2.06 8.13 -2.38 -0.02 2.04 16 Total: -1.00 -70.11 366.44 2.68 -67.42 By element: Atomic # 1 Polarization: 45.22 SS G_CDS: -0.18 Total: 45.03 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 4.16 Total: -15.95 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -3.13 Total: -120.62 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.06 Total: -22.05 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Total: -70.11 2.68 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022167727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.401 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds