Wall clock time and date at job start Tue Mar 31 2020 11:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99846 * 2 1 4 4 C 1.38210 * 120.00010 * 179.76948 * 3 2 1 5 5 C 1.38255 * 119.99891 * 0.48861 * 4 3 2 6 6 C 1.50706 * 119.99917 * 179.76816 * 5 4 3 7 7 C 1.50699 * 109.46706 * 269.72234 * 6 5 4 8 8 O 1.21283 * 120.00595 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99930 * 179.97438 * 7 6 5 10 10 C 1.47863 * 126.94302 * 0.02562 * 9 7 6 11 11 C 1.56020 * 105.10629 * 182.00070 * 10 9 7 12 12 H 1.08996 * 116.89578 * 159.20615 * 11 10 9 13 13 C 1.57087 * 99.60394 * 32.80494 * 11 10 9 14 14 C 1.49285 * 126.94429 * 180.02562 * 9 7 6 15 15 H 1.08999 * 116.78921 * 16.30930 * 14 9 7 16 16 C 1.56019 * 104.09162 * 246.69764 * 14 9 7 17 17 N 1.47871 * 105.19451 * 288.71659 * 16 14 9 18 18 C 1.36936 * 126.94621 * 182.03671 * 17 16 14 19 19 H 1.08000 * 119.99885 * 173.67477 * 18 17 16 20 20 C 1.38803 * 120.00272 * 353.67512 * 18 17 16 21 21 N 1.31628 * 119.99954 * 6.42887 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 186.42683 * 20 18 17 23 23 H 1.48492 * 109.47224 * 94.98713 * 22 20 18 24 24 H 1.48500 * 109.46934 * 214.98644 * 22 20 18 25 25 H 1.48495 * 109.46820 * 334.98384 * 22 20 18 26 26 C 1.38215 * 120.00199 * 359.49112 * 5 4 3 27 27 C 1.38209 * 120.00171 * 179.97438 * 2 1 3 28 28 C 1.50698 * 120.00241 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46785 * 270.01695 * 1 2 3 30 30 H 1.08998 * 109.47621 * 30.02067 * 1 2 3 31 31 H 1.09001 * 109.46759 * 150.02198 * 1 2 3 32 32 H 1.08001 * 119.99814 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.00077 * 180.25726 * 4 3 2 34 34 H 1.09004 * 109.46945 * 149.72809 * 6 5 4 35 35 H 1.08994 * 109.47145 * 29.71856 * 6 5 4 36 36 H 1.08998 * 110.31857 * 63.08994 * 10 9 7 37 37 H 1.09005 * 110.40231 * 300.95600 * 10 9 7 38 38 H 1.08996 * 112.36408 * 191.71267 * 13 11 10 39 39 H 1.08997 * 112.36584 * 64.27803 * 13 11 10 40 40 H 1.08994 * 110.31741 * 47.67880 * 16 14 9 41 41 H 1.09002 * 110.31574 * 169.76602 * 16 14 9 42 42 H 0.96998 * 119.99891 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.00164 * 180.27544 * 26 5 4 44 44 H 1.08999 * 109.47515 * 269.98331 * 28 27 2 45 45 H 1.09004 * 109.46744 * 29.98066 * 28 27 2 46 46 H 1.09002 * 109.47190 * 149.97736 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0048 5 6 4.2717 0.0001 -0.0006 6 6 5.7787 0.0002 -0.0006 7 6 6.2809 -0.0003 -1.4215 8 8 5.4928 -0.0002 -2.3433 9 7 7.6060 0.0002 -1.6678 10 6 8.6958 0.0007 -0.6684 11 6 10.0129 0.0537 -1.5031 12 1 10.9075 0.4074 -0.9906 13 6 9.5169 0.9128 -2.7211 14 6 8.2701 0.0004 -3.0049 15 1 7.6521 0.2733 -3.8603 16 6 8.9757 -1.3891 -3.0787 17 7 10.1045 -1.3016 -2.1276 18 6 11.0416 -2.2667 -1.8714 19 1 11.8805 -2.0473 -1.2275 20 6 10.9134 -3.5268 -2.4391 21 7 9.9645 -3.7575 -3.3217 22 14 12.0874 -4.8952 -1.9506 23 1 11.4765 -5.7090 -0.8692 24 1 12.3577 -5.7592 -3.1278 25 1 13.3613 -4.3052 -1.4668 26 6 3.5807 -1.1969 -0.0002 27 6 2.1981 -1.1969 0.0005 28 6 1.4447 -2.5020 0.0017 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6582 2.1327 0.0004 33 1 4.1203 2.1327 0.0090 34 1 6.1421 -0.8897 0.5135 35 1 6.1420 0.8904 0.5128 36 1 8.6624 -0.9107 -0.0716 37 1 8.6203 0.8769 -0.0243 38 1 10.2285 0.9114 -3.5468 39 1 9.2332 1.9235 -2.4277 40 1 8.2879 -2.1794 -2.7781 41 1 9.3446 -1.5731 -4.0878 42 1 9.8752 -4.6380 -3.7187 43 1 4.1207 -2.1322 0.0001 44 1 1.2637 -2.8162 1.0296 45 1 0.4919 -2.3720 -0.5116 46 1 2.0334 -3.2619 -0.5122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032770888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:41 Heat of formation + Delta-G solvation = 37.950068 kcal Electronic energy + Delta-G solvation = -26142.791783 eV Core-core repulsion = 22612.547842 eV Total energy + Delta-G solvation = -3530.243941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19919 -39.50124 -37.72508 -34.10366 -33.60463 -32.23148 -31.61328 -29.81129 -28.80433 -28.48451 -27.19564 -25.35368 -25.11894 -23.37183 -22.07645 -20.97124 -19.89752 -19.72578 -18.36596 -17.17791 -16.31134 -16.06220 -15.88024 -15.50785 -14.93353 -14.70709 -14.44930 -14.25740 -13.91554 -13.37390 -13.27423 -13.08190 -12.87537 -12.69860 -12.65798 -12.22595 -11.97123 -11.95905 -11.72584 -11.62159 -11.57207 -11.33287 -11.03084 -10.92506 -10.87943 -10.82485 -10.76289 -10.58684 -10.24943 -10.08004 -9.65938 -9.41997 -8.70906 -8.63976 -8.33846 -7.96988 -6.93134 -5.79259 -3.13139 1.38519 1.48992 3.10268 3.35860 3.39726 3.40850 3.43740 3.86140 4.40356 4.71935 4.78068 4.88264 4.90759 5.02512 5.08292 5.19488 5.20744 5.30917 5.36052 5.41387 5.45738 5.55300 5.57231 5.57922 5.62126 5.65674 5.74816 5.76859 5.77715 5.85779 5.93164 6.15909 6.19280 6.24082 6.29524 6.40528 6.48112 6.51556 6.58870 6.66876 6.70076 6.72286 7.10425 7.39441 7.51380 7.71304 8.07947 8.14445 8.65467 9.08346 9.69437 10.39575 11.33053 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.003222 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.921881 B = 8689.047815 C = 9594.248907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.058 4.058 6 C -0.098 4.098 7 C 0.529 3.471 8 O -0.547 6.547 9 N -0.607 5.607 10 C 0.085 3.915 11 C 0.140 3.860 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.098 3.902 15 H 0.112 0.888 16 C 0.173 3.827 17 N -0.598 5.598 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C -0.100 4.100 27 C -0.087 4.087 28 C -0.116 4.116 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.254 0.746 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 9.719 8.670 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.059 4.059 6 C -0.138 4.138 7 C 0.317 3.683 8 O -0.426 6.426 9 N -0.341 5.341 10 C -0.041 4.041 11 C 0.031 3.969 12 H 0.124 0.876 13 C -0.192 4.192 14 C -0.004 4.004 15 H 0.130 0.870 16 C 0.048 3.952 17 N -0.322 5.322 18 C -0.361 4.361 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.118 4.118 27 C -0.087 4.087 28 C -0.173 4.173 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.479 9.420 8.121 18.341 hybrid contribution 0.722 -0.847 0.244 1.139 sum -12.757 8.573 8.365 17.499 Atomic orbital electron populations 1.20822 0.91611 1.02666 1.01971 1.19687 0.95712 0.92739 1.01285 1.20891 0.94011 0.97221 1.01444 1.20900 0.94138 0.97265 1.00325 1.19289 0.93776 0.93432 0.99353 1.20641 0.92731 1.04887 0.95543 1.19985 0.80827 0.76682 0.90758 1.90685 1.54413 1.51079 1.46380 1.49207 1.04226 1.71602 1.09088 1.23250 0.88927 1.00212 0.91676 1.23219 0.93789 0.87546 0.92346 0.87606 1.24168 0.97657 0.96991 1.00379 1.24285 0.91581 0.99119 0.85449 0.86976 1.21926 0.88587 0.90346 0.94303 1.45293 1.30731 1.11170 1.45018 1.19040 1.01720 0.89673 1.25629 0.90151 1.24849 0.98676 0.97553 0.99101 1.69942 1.34345 1.21756 1.30235 0.86120 0.79947 0.82223 0.77582 1.21626 1.21773 1.20570 1.20878 0.93459 0.97623 0.99853 1.19675 0.93537 0.94830 1.00661 1.20844 1.00057 0.94293 1.02069 0.91468 0.91846 0.91297 0.86354 0.86439 0.88227 0.88488 0.91064 0.92849 0.89860 0.91683 0.93211 0.93120 0.93586 0.86202 0.91360 0.91315 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.60 36.01 0.35 -0.66 16 2 C -0.09 -1.14 5.88 -104.62 -0.62 -1.75 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.11 -1.45 9.70 -39.59 -0.38 -1.83 16 5 C -0.06 -0.85 4.37 -104.62 -0.46 -1.30 16 6 C -0.10 -1.40 5.12 -29.03 -0.15 -1.55 16 7 C 0.53 9.75 7.89 -10.98 -0.09 9.66 16 8 O -0.55 -12.00 16.40 5.56 0.09 -11.90 16 9 N -0.61 -11.17 2.95 -156.79 -0.46 -11.64 16 10 C 0.08 1.41 6.01 -1.68 -0.01 1.40 16 11 C 0.14 2.54 5.54 -62.42 -0.35 2.20 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.15 -2.56 6.81 -22.30 -0.15 -2.72 16 14 C 0.10 1.92 5.23 -62.55 -0.33 1.59 16 15 H 0.11 2.16 8.08 -51.93 -0.42 1.74 16 16 C 0.17 4.17 4.76 -1.67 -0.01 4.17 16 17 N -0.60 -14.26 3.03 -156.17 -0.47 -14.73 16 18 C -0.23 -6.14 10.37 -15.06 -0.16 -6.30 16 19 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.68 10.61 55.49 0.59 -26.10 16 22 Si 0.91 21.58 29.56 -169.99 -5.02 16.56 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 C -0.10 -1.45 9.36 -39.58 -0.37 -1.82 16 27 C -0.09 -1.13 5.88 -104.63 -0.62 -1.74 16 28 C -0.12 -1.19 9.61 36.00 0.35 -0.84 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 35 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 1.39 7.53 -51.93 -0.39 0.99 16 41 H 0.05 1.34 7.63 -51.93 -0.40 0.95 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.61 5.95 -51.93 -0.31 0.30 16 46 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -32.52 369.96 -10.45 -42.96 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.28 Total: 2.81 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.46 Total: -3.54 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.35 Total: -52.46 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.52 -10.45 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032770888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.913 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds