Wall clock time and date at job start Tue Mar 31 2020 11:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99717 * 2 1 4 4 H 1.48501 * 109.47360 * 95.59823 * 3 2 1 5 5 H 1.48511 * 109.47141 * 335.59809 * 3 2 1 6 6 H 1.48502 * 109.47400 * 215.60103 * 3 2 1 7 7 C 1.38811 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00260 * 28.42796 * 7 2 1 9 9 N 1.36941 * 119.99706 * 208.42564 * 7 2 1 10 10 C 1.47206 * 125.89287 * 9.53831 * 9 7 2 11 11 C 1.54758 * 107.22286 * 176.11998 * 10 9 7 12 12 C 1.54200 * 102.15377 * 338.85686 * 11 10 9 13 13 H 1.09004 * 109.50647 * 281.29431 * 12 11 10 14 14 C 1.50936 * 112.77242 * 159.91875 * 12 11 10 15 15 N 1.46715 * 111.13731 * 289.92296 * 14 12 11 16 16 C 1.34775 * 121.35590 * 127.81894 * 15 14 12 17 17 O 1.21279 * 120.00767 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99807 * 179.97438 * 16 15 14 19 19 C 1.50289 * 109.46660 * 300.01352 * 18 16 15 20 20 C 1.32313 * 121.60678 * 303.32632 * 19 18 16 21 21 C 1.45203 * 123.00108 * 1.01647 * 20 19 18 22 22 C 1.32936 * 125.19751 * 319.52335 * 21 20 19 23 23 C 1.45203 * 125.19964 * 0.02562 * 22 21 20 24 24 C 1.32293 * 123.02286 * 40.43502 * 23 22 21 25 25 C 1.47216 * 117.28152 * 307.79590 * 15 14 12 26 26 C 1.53054 * 108.18820 * 57.85308 * 25 15 14 27 27 C 1.48634 * 125.88446 * 189.83848 * 9 7 2 28 28 H 1.08991 * 112.01377 * 328.14262 * 27 9 7 29 29 H 0.97004 * 119.99727 * 184.38027 * 1 2 3 30 30 H 1.09001 * 109.88652 * 295.67318 * 10 9 7 31 31 H 1.09004 * 109.88689 * 56.85409 * 10 9 7 32 32 H 1.09002 * 111.06434 * 220.55049 * 11 10 9 33 33 H 1.09000 * 110.67994 * 96.99471 * 11 10 9 34 34 H 1.08998 * 109.14662 * 50.35296 * 14 12 11 35 35 H 1.09002 * 109.14344 * 169.55269 * 14 12 11 36 36 H 1.09004 * 109.46165 * 60.00108 * 18 16 15 37 37 H 1.08005 * 119.20158 * 123.31951 * 19 18 16 38 38 H 1.08001 * 118.50910 * 181.01826 * 20 19 18 39 39 H 1.07998 * 117.39664 * 139.55005 * 21 20 19 40 40 H 1.08001 * 117.40166 * 180.02562 * 22 21 20 41 41 H 1.08004 * 118.48890 * 220.40877 * 23 22 21 42 42 H 1.08000 * 119.20397 * 179.04557 * 24 23 22 43 43 H 1.08992 * 109.80268 * 177.65564 * 25 15 14 44 44 H 1.08996 * 109.79951 * 298.52722 * 25 15 14 45 45 H 1.08997 * 109.73078 * 182.29448 * 26 25 15 46 46 H 1.08999 * 108.82554 * 62.90167 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6159 1.9782 1.3934 5 1 1.3933 2.6840 -0.5785 6 1 3.4835 1.4774 -0.8150 7 6 2.0103 -1.2021 0.0005 8 1 1.5681 -2.0812 -0.4443 9 7 3.2559 -1.2732 0.5651 10 6 3.8979 -0.2243 1.3741 11 6 5.2483 -0.7923 1.8728 12 6 5.0244 -2.3134 1.7539 13 1 4.4289 -2.6607 2.5983 14 6 6.3164 -3.0928 1.7146 15 7 7.0299 -2.8709 0.4520 16 6 8.3229 -2.4911 0.4346 17 8 8.9205 -2.3254 1.4768 18 6 9.0263 -2.2724 -0.8802 19 6 9.0114 -3.5481 -1.6745 20 6 9.5121 -4.6728 -1.1896 21 6 10.0898 -4.7732 0.1388 22 6 10.8677 -3.8574 0.7074 23 6 11.2693 -2.6035 0.0951 24 6 10.4478 -1.8570 -0.6247 25 6 6.2760 -3.0806 -0.7949 26 6 5.0564 -2.1559 -0.7771 27 6 4.1952 -2.4205 0.4615 28 1 3.6704 -3.3733 0.3935 29 1 -0.4850 -0.8377 0.0642 30 1 4.0687 0.6624 0.7635 31 1 3.2658 0.0258 2.2262 32 1 5.4354 -0.5063 2.9078 33 1 6.0644 -0.4676 1.2273 34 1 6.9498 -2.7769 2.5435 35 1 6.0961 -4.1553 1.8180 36 1 8.5142 -1.4898 -1.4402 37 1 8.5815 -3.5470 -2.6653 38 1 9.4903 -5.5565 -1.8101 39 1 9.8702 -5.6630 0.7102 40 1 11.2300 -4.0623 1.7040 41 1 12.2852 -2.2644 0.2341 42 1 10.8076 -0.9268 -1.0391 43 1 6.9064 -2.8433 -1.6518 44 1 5.9437 -4.1168 -0.8557 45 1 4.4570 -2.3202 -1.6725 46 1 5.3995 -1.1215 -0.7610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036727443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:23 Heat of formation + Delta-G solvation = 41.574918 kcal Electronic energy + Delta-G solvation = -27564.102839 eV Core-core repulsion = 24034.016083 eV Total energy + Delta-G solvation = -3530.086756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.88666 -40.34507 -38.09057 -36.76103 -34.76158 -33.43508 -33.20918 -32.77655 -31.57847 -29.99531 -27.69509 -26.38402 -24.86345 -24.56033 -23.91199 -22.35171 -21.72817 -19.97258 -19.48720 -19.12160 -18.50909 -18.13804 -17.42342 -17.03357 -16.72599 -16.50479 -15.91240 -15.68660 -15.15655 -15.05761 -14.92251 -14.60782 -14.42645 -14.28778 -13.98652 -13.45522 -13.43814 -13.23905 -13.15678 -12.99827 -12.83901 -12.75543 -12.47093 -12.27878 -12.05885 -11.79328 -11.69210 -11.40572 -11.27450 -11.13118 -11.05518 -10.79515 -10.61512 -10.11966 -9.61454 -9.10393 -9.05753 -8.63926 -5.36168 0.37765 1.12197 1.39798 1.47803 1.67593 1.71080 2.13841 2.33061 2.53600 2.99654 3.28141 3.57858 3.69654 3.83633 3.87841 3.90127 4.02045 4.09417 4.12157 4.21919 4.24507 4.30563 4.36915 4.47873 4.51055 4.57875 4.62370 4.73439 4.77314 4.80111 4.85025 4.87824 4.91646 5.02919 5.04308 5.08955 5.21225 5.31175 5.49267 5.57253 5.61284 5.64357 5.70223 5.86979 5.89254 5.97543 6.13122 6.53088 6.83185 7.27809 7.49798 8.17730 8.87346 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025696 B = 0.003846 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.411509 B = 7279.478508 C = 7367.507684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 1.094 2.906 4 H -0.280 1.280 5 H -0.307 1.307 6 H -0.279 1.279 7 C -0.308 4.308 8 H 0.052 0.948 9 N -0.625 5.625 10 C 0.112 3.888 11 C -0.107 4.107 12 C -0.099 4.099 13 H 0.082 0.918 14 C 0.136 3.864 15 N -0.601 5.601 16 C 0.527 3.473 17 O -0.566 6.566 18 C -0.052 4.052 19 C -0.140 4.140 20 C -0.118 4.118 21 C -0.152 4.152 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.135 4.135 25 C 0.117 3.883 26 C -0.136 4.136 27 C 0.159 3.841 28 H 0.061 0.939 29 H 0.251 0.749 30 H 0.016 0.984 31 H 0.022 0.978 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.909 -9.496 -2.727 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.265 4.265 3 Si 0.923 3.077 4 H -0.207 1.207 5 H -0.236 1.236 6 H -0.206 1.206 7 C -0.437 4.437 8 H 0.070 0.930 9 N -0.351 5.351 10 C -0.013 4.013 11 C -0.144 4.144 12 C -0.119 4.119 13 H 0.100 0.900 14 C 0.012 3.988 15 N -0.333 5.333 16 C 0.316 3.684 17 O -0.445 6.445 18 C -0.073 4.073 19 C -0.158 4.158 20 C -0.136 4.136 21 C -0.170 4.170 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.153 4.153 25 C -0.005 4.005 26 C -0.176 4.176 27 C 0.054 3.946 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.168 0.832 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.940 -7.788 -2.256 25.275 hybrid contribution -0.740 -1.453 0.161 1.638 sum 23.200 -9.241 -2.095 25.060 Atomic orbital electron populations 1.70988 1.07358 1.28532 1.52900 1.26701 0.96134 1.03676 0.99953 0.83410 0.73415 0.73711 0.77122 1.20731 1.23613 1.20551 1.19918 0.91358 0.96536 1.35849 0.93004 1.45416 1.15144 1.15720 1.58824 1.21764 0.94084 0.91991 0.93429 1.22383 0.95005 0.95559 1.01495 1.21786 0.96378 0.95293 0.98468 0.89968 1.20801 0.91374 0.99524 0.87071 1.48028 1.10266 1.67330 1.07720 1.20782 0.81020 0.75125 0.91464 1.90650 1.65649 1.52745 1.35440 1.19335 0.95123 0.99185 0.93642 1.23097 1.01017 0.90691 1.01015 1.21293 0.98320 0.98996 0.94997 1.21180 0.99341 1.00323 0.96138 1.21132 0.97645 0.93660 0.98463 1.21209 1.00133 0.95009 0.97123 1.22961 0.93384 0.99833 0.99124 1.21939 0.92250 0.99934 0.86422 1.22367 0.96513 0.99584 0.99148 1.21479 0.89052 0.90637 0.93442 0.92105 0.94000 0.96647 0.96016 0.89678 0.91476 0.89862 0.90147 0.86276 0.83218 0.84420 0.87066 0.87655 0.85313 0.84614 0.87281 0.89671 0.91796 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.70 21.65 0.30 -60.87 16 2 C -0.07 -4.15 5.42 84.86 0.46 -3.69 16 3 Si 1.09 54.93 24.67 68.60 1.69 56.62 16 4 H -0.28 -13.27 6.64 99.48 0.66 -12.61 16 5 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.28 -13.09 6.78 99.48 0.67 -12.41 16 7 C -0.31 -17.46 10.44 84.03 0.88 -16.58 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.63 -29.37 2.77 -665.69 -1.84 -31.22 16 10 C 0.11 4.83 4.59 86.84 0.40 5.23 16 11 C -0.11 -3.53 5.90 31.60 0.19 -3.34 16 12 C -0.10 -3.00 2.89 -10.74 -0.03 -3.03 16 13 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 14 C 0.14 3.40 5.84 85.67 0.50 3.90 16 15 N -0.60 -14.27 2.81 -823.25 -2.31 -16.59 16 16 C 0.53 13.13 5.44 87.66 0.48 13.61 16 17 O -0.57 -17.54 13.14 -3.03 -0.04 -17.58 16 18 C -0.05 -0.98 2.12 -13.29 -0.03 -1.01 16 19 C -0.14 -2.08 6.79 24.48 0.17 -1.91 16 20 C -0.12 -1.87 9.58 22.99 0.22 -1.65 16 21 C -0.15 -2.94 8.53 22.89 0.20 -2.75 16 22 C -0.09 -1.93 7.35 22.89 0.17 -1.76 16 23 C -0.12 -2.32 9.09 22.99 0.21 -2.11 16 24 C -0.13 -2.55 8.78 24.49 0.21 -2.33 16 25 C 0.12 2.47 5.70 86.26 0.49 2.96 16 26 C -0.14 -4.11 5.28 30.67 0.16 -3.95 16 27 C 0.16 5.70 3.59 44.95 0.16 5.86 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.25 16.07 8.73 -92.70 -0.81 15.26 16 30 H 0.02 0.72 4.16 -2.39 -0.01 0.71 16 31 H 0.02 1.01 7.66 -2.39 -0.02 0.99 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.19 7.46 -2.39 -0.02 2.17 16 34 H 0.08 2.24 7.04 -2.39 -0.02 2.22 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.12 1.93 7.81 -2.38 -0.02 1.91 16 37 H 0.15 1.42 7.79 -2.91 -0.02 1.40 16 38 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.11 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 41 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.11 1.76 4.78 -2.39 -0.01 1.75 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 1.59 6.98 -2.39 -0.02 1.58 16 Total: -1.00 -72.27 344.57 3.46 -68.81 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.84 Total: 13.38 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.83 Total: -12.55 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -3.86 Total: -108.68 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.04 Total: -17.58 kcal Atomic # 14 Polarization: 54.93 SS G_CDS: 1.69 Total: 56.62 kcal Total: -72.27 3.46 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.384 kcal (2) G-P(sol) polarization free energy of solvation -72.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds