Wall clock time and date at job start Tue Mar 31 2020 11:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48505 * 109.46677 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47416 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40142 * 0.02562 * 9 7 2 11 11 C 1.55290 * 107.03812 * 175.07689 * 10 9 7 12 12 C 1.53745 * 101.84456 * 337.52553 * 11 10 9 13 13 H 1.08997 * 111.30945 * 280.14986 * 12 11 10 14 14 C 1.52244 * 114.73956 * 152.74993 * 12 11 10 15 15 N 1.47721 * 106.36575 * 190.42805 * 14 12 11 16 16 C 1.34772 * 119.68272 * 232.08164 * 15 14 12 17 17 O 1.21286 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.50294 * 109.46244 * 300.02438 * 18 16 15 20 20 C 1.32266 * 121.58827 * 303.35958 * 19 18 16 21 21 C 1.45199 * 123.04379 * 0.94818 * 20 19 18 22 22 C 1.32939 * 125.20173 * 319.60543 * 21 20 19 23 23 C 1.45206 * 125.19415 * 359.97293 * 22 21 20 24 24 C 1.32295 * 123.02511 * 40.43742 * 23 22 21 25 25 C 1.46599 * 120.63075 * 52.05965 * 15 14 12 26 26 C 1.53950 * 110.57480 * 312.17365 * 25 15 14 27 27 C 1.45459 * 126.40667 * 179.71408 * 9 7 2 28 28 H 1.09004 * 109.26603 * 93.79526 * 27 9 7 29 29 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.92372 * 294.42500 * 10 9 7 31 31 H 1.08996 * 109.91942 * 55.53268 * 10 9 7 32 32 H 1.09005 * 110.95540 * 95.66377 * 11 10 9 33 33 H 1.09002 * 110.95696 * 219.38064 * 11 10 9 34 34 H 1.08997 * 110.07021 * 309.64323 * 14 12 11 35 35 H 1.08997 * 110.06988 * 71.11035 * 14 12 11 36 36 H 1.08998 * 109.47002 * 60.00676 * 18 16 15 37 37 H 1.08006 * 119.19780 * 123.32115 * 19 18 16 38 38 H 1.08002 * 118.47085 * 180.94088 * 20 19 18 39 39 H 1.08001 * 117.39931 * 139.57972 * 21 20 19 40 40 H 1.07994 * 117.40500 * 179.97438 * 22 21 20 41 41 H 1.07992 * 118.49067 * 220.40967 * 23 22 21 42 42 H 1.07995 * 119.20553 * 179.00162 * 24 23 22 43 43 H 1.09002 * 109.25587 * 72.46022 * 25 15 14 44 44 H 1.09000 * 109.24743 * 191.92978 * 25 15 14 45 45 H 1.08997 * 109.88246 * 170.51791 * 26 25 15 46 46 H 1.09004 * 109.88102 * 291.51865 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5534 -0.0005 11 6 -0.4338 -4.0742 -0.1275 12 6 0.8692 -4.5896 -0.7602 13 1 0.8869 -4.4074 -1.8347 14 6 1.2015 -6.0408 -0.4420 15 7 2.5836 -6.2644 -0.9133 16 6 2.8507 -7.3036 -1.7288 17 8 1.9585 -8.0501 -2.0719 18 6 4.2581 -7.5387 -2.2135 19 6 4.7283 -6.3390 -2.9872 20 6 4.0634 -5.8882 -4.0380 21 6 2.8315 -6.4916 -4.5140 22 6 2.5920 -7.7977 -4.5759 23 6 3.5226 -8.8390 -4.1783 24 6 4.2862 -8.7509 -3.1016 25 6 3.6672 -5.3664 -0.5028 26 6 3.2485 -3.8958 -0.6824 27 6 1.9079 -3.7211 -0.0048 28 1 1.9935 -4.0803 1.0208 29 1 -0.4850 0.8400 0.0004 30 1 -0.5638 -2.1733 0.9320 31 1 -0.5798 -2.0189 -0.8460 32 1 -0.5956 -4.5235 0.8524 33 1 -1.2847 -4.2569 -0.7837 34 1 1.1407 -6.2115 0.6328 35 1 0.5141 -6.7054 -0.9653 36 1 4.9147 -7.6995 -1.3585 37 1 5.6304 -5.8326 -2.6772 38 1 4.4550 -5.0314 -4.5662 39 1 2.0472 -5.8263 -4.8437 40 1 1.6287 -8.1092 -4.9519 41 1 3.5945 -9.7265 -4.7894 42 1 4.9454 -9.5698 -2.8546 43 1 3.9060 -5.5468 0.5453 44 1 4.5490 -5.5655 -1.1118 45 1 3.9880 -3.2410 -0.2216 46 1 3.1576 -3.6632 -1.7434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036727445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:32 Heat of formation + Delta-G solvation = 59.238588 kcal Electronic energy + Delta-G solvation = -27541.799892 eV Core-core repulsion = 24012.479090 eV Total energy + Delta-G solvation = -3529.320802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76511 -38.79833 -36.99067 -35.39355 -32.98549 -32.34108 -32.11474 -31.51467 -29.54857 -28.12819 -26.44506 -24.83391 -23.65388 -23.39847 -22.28981 -20.40445 -20.01798 -19.38306 -18.23468 -17.58657 -17.26532 -16.58409 -15.98101 -15.61961 -15.03667 -14.84723 -14.47257 -14.33265 -13.99720 -13.86671 -13.52077 -13.00483 -12.93805 -12.72618 -12.53482 -12.22914 -12.12628 -11.92678 -11.61318 -11.43717 -11.37788 -10.94050 -10.80896 -10.77676 -10.64746 -10.23370 -10.15619 -10.08212 -9.85027 -9.70910 -9.61856 -9.46870 -9.21230 -8.61879 -8.42440 -8.13347 -6.83020 -5.71270 -3.04360 1.24835 1.98250 2.77107 3.17192 3.29463 3.39309 3.43636 3.45160 4.48913 4.58424 4.69384 4.85635 4.94025 5.06798 5.08521 5.11577 5.19559 5.30336 5.39001 5.40620 5.56259 5.57532 5.63487 5.66805 5.84025 5.89510 5.92681 5.94650 6.07603 6.19135 6.22415 6.27935 6.38827 6.42848 6.48306 6.56876 6.64760 6.67476 6.72877 6.77350 6.85488 6.89987 7.09722 7.55431 7.60606 7.63303 7.81268 8.24988 8.38230 9.19605 9.83413 10.51960 11.41189 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.003988 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.504587 B = 7019.831755 C = 7502.551048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.120 4.120 13 H 0.078 0.922 14 C 0.128 3.872 15 N -0.602 5.602 16 C 0.522 3.478 17 O -0.538 6.538 18 C -0.047 4.047 19 C -0.147 4.147 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.080 4.080 23 C -0.101 4.101 24 C -0.130 4.130 25 C 0.105 3.895 26 C -0.127 4.127 27 C 0.169 3.831 28 H 0.016 0.984 29 H 0.252 0.748 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 -15.738 -5.297 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.141 4.141 13 H 0.096 0.904 14 C 0.006 3.994 15 N -0.335 5.335 16 C 0.310 3.690 17 O -0.415 6.415 18 C -0.068 4.068 19 C -0.165 4.165 20 C -0.123 4.123 21 C -0.158 4.158 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.149 4.149 25 C -0.018 4.018 26 C -0.167 4.167 27 C 0.061 3.939 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.098 -15.856 -5.444 18.618 hybrid contribution 0.479 1.122 0.053 1.221 sum 8.577 -14.734 -5.391 17.881 Atomic orbital electron populations 1.69928 1.04889 1.25119 1.56973 1.24782 0.95653 0.97585 1.02358 0.86245 0.78494 0.83450 0.77839 1.21237 1.21637 1.21210 1.18942 0.90295 0.82343 1.43798 0.90481 1.44196 1.01636 0.99460 1.86558 1.21522 0.83954 0.88303 1.00928 1.22715 0.95855 0.99668 0.99287 1.22531 0.97641 0.93407 1.00498 0.90408 1.21571 0.81935 0.97006 0.98925 1.48188 1.09519 1.27576 1.48192 1.20400 0.90358 0.80461 0.77796 1.90653 1.47400 1.46462 1.56983 1.19231 0.95392 0.93843 0.98345 1.22785 1.01086 0.95100 0.97505 1.21083 0.94832 0.99541 0.96828 1.21027 0.96863 0.95218 1.02687 1.20987 0.97975 0.92644 0.98190 1.20988 0.95436 0.98220 0.97246 1.22680 0.99935 0.95869 0.96368 1.21970 0.89456 0.90481 0.99898 1.21802 0.99291 0.93555 1.02015 1.20466 0.91192 0.87150 0.95109 0.96643 0.93729 0.94434 0.92760 0.92399 0.92160 0.91653 0.89448 0.87871 0.85855 0.86349 0.87078 0.87132 0.86773 0.86482 0.92017 0.89475 0.90754 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.43 55.49 0.58 -26.28 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 8 H 0.08 1.98 7.21 -52.49 -0.38 1.60 16 9 N -0.59 -14.73 3.35 -163.47 -0.55 -15.28 16 10 C 0.18 4.27 5.46 -1.92 -0.01 4.26 16 11 C -0.14 -2.56 6.54 -25.13 -0.16 -2.72 16 12 C -0.12 -2.16 2.85 -89.54 -0.26 -2.42 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 14 C 0.13 2.00 5.95 -3.76 -0.02 1.98 16 15 N -0.60 -8.74 3.00 -172.49 -0.52 -9.26 16 16 C 0.52 7.59 5.40 -10.99 -0.06 7.53 16 17 O -0.54 -9.25 13.03 5.55 0.07 -9.18 16 18 C -0.05 -0.53 2.11 -94.47 -0.20 -0.73 16 19 C -0.15 -1.57 6.57 -36.43 -0.24 -1.80 16 20 C -0.10 -1.24 9.58 -38.75 -0.37 -1.61 16 21 C -0.14 -1.82 8.53 -38.65 -0.33 -2.15 16 22 C -0.08 -1.02 7.35 -38.65 -0.28 -1.31 16 23 C -0.10 -1.16 9.09 -38.74 -0.35 -1.52 16 24 C -0.13 -1.42 8.78 -36.43 -0.32 -1.74 16 25 C 0.11 1.38 5.84 -3.49 -0.02 1.36 16 26 C -0.13 -2.12 5.48 -27.13 -0.15 -2.27 16 27 C 0.17 3.35 2.55 -68.31 -0.17 3.18 16 28 H 0.02 0.33 7.89 -51.93 -0.41 -0.08 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 30 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 31 H 0.05 1.46 7.20 -51.93 -0.37 1.08 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 36 H 0.10 0.94 7.99 -51.93 -0.42 0.53 16 37 H 0.12 1.04 7.64 -52.48 -0.40 0.64 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.94 4.03 -51.93 -0.21 0.73 16 45 H 0.07 1.24 7.62 -51.93 -0.40 0.85 16 46 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -31.45 349.86 -10.49 -41.94 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.13 Total: 2.52 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.20 Total: -6.50 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.49 Total: -50.81 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.45 -10.49 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.182 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds