Wall clock time and date at job start Tue Mar 31 2020 11:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48505 * 109.46677 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47416 * 120.00100 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40142 * 0.02562 * 9 7 2 11 11 C 1.55290 * 107.03812 * 175.07689 * 10 9 7 12 12 C 1.53745 * 101.84456 * 337.52553 * 11 10 9 13 13 H 1.08997 * 111.30945 * 280.14986 * 12 11 10 14 14 C 1.52244 * 114.73956 * 152.74993 * 12 11 10 15 15 N 1.47721 * 106.36575 * 190.42805 * 14 12 11 16 16 C 1.34772 * 119.68272 * 232.08164 * 15 14 12 17 17 O 1.21286 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.50294 * 109.46244 * 300.02438 * 18 16 15 20 20 C 1.32266 * 121.58827 * 303.35958 * 19 18 16 21 21 C 1.45199 * 123.04379 * 0.94818 * 20 19 18 22 22 C 1.32939 * 125.20173 * 319.60543 * 21 20 19 23 23 C 1.45206 * 125.19415 * 359.97293 * 22 21 20 24 24 C 1.32295 * 123.02511 * 40.43742 * 23 22 21 25 25 C 1.46599 * 120.63075 * 52.05965 * 15 14 12 26 26 C 1.53950 * 110.57480 * 312.17365 * 25 15 14 27 27 C 1.45459 * 126.40667 * 179.71408 * 9 7 2 28 28 H 1.09004 * 109.26603 * 93.79526 * 27 9 7 29 29 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.92372 * 294.42500 * 10 9 7 31 31 H 1.08996 * 109.91942 * 55.53268 * 10 9 7 32 32 H 1.09005 * 110.95540 * 95.66377 * 11 10 9 33 33 H 1.09002 * 110.95696 * 219.38064 * 11 10 9 34 34 H 1.08997 * 110.07021 * 309.64323 * 14 12 11 35 35 H 1.08997 * 110.06988 * 71.11035 * 14 12 11 36 36 H 1.08998 * 109.47002 * 60.00676 * 18 16 15 37 37 H 1.08006 * 119.19780 * 123.32115 * 19 18 16 38 38 H 1.08002 * 118.47085 * 180.94088 * 20 19 18 39 39 H 1.08001 * 117.39931 * 139.57972 * 21 20 19 40 40 H 1.07994 * 117.40500 * 179.97438 * 22 21 20 41 41 H 1.07992 * 118.49067 * 220.40967 * 23 22 21 42 42 H 1.07995 * 119.20553 * 179.00162 * 24 23 22 43 43 H 1.09002 * 109.25587 * 72.46022 * 25 15 14 44 44 H 1.09000 * 109.24743 * 191.92978 * 25 15 14 45 45 H 1.08997 * 109.88246 * 170.51791 * 26 25 15 46 46 H 1.09004 * 109.88102 * 291.51865 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5534 -0.0005 11 6 -0.4338 -4.0742 -0.1275 12 6 0.8692 -4.5896 -0.7602 13 1 0.8869 -4.4074 -1.8347 14 6 1.2015 -6.0408 -0.4420 15 7 2.5836 -6.2644 -0.9133 16 6 2.8507 -7.3036 -1.7288 17 8 1.9585 -8.0501 -2.0719 18 6 4.2581 -7.5387 -2.2135 19 6 4.7283 -6.3390 -2.9872 20 6 4.0634 -5.8882 -4.0380 21 6 2.8315 -6.4916 -4.5140 22 6 2.5920 -7.7977 -4.5759 23 6 3.5226 -8.8390 -4.1783 24 6 4.2862 -8.7509 -3.1016 25 6 3.6672 -5.3664 -0.5028 26 6 3.2485 -3.8958 -0.6824 27 6 1.9079 -3.7211 -0.0048 28 1 1.9935 -4.0803 1.0208 29 1 -0.4850 0.8400 0.0004 30 1 -0.5638 -2.1733 0.9320 31 1 -0.5798 -2.0189 -0.8460 32 1 -0.5956 -4.5235 0.8524 33 1 -1.2847 -4.2569 -0.7837 34 1 1.1407 -6.2115 0.6328 35 1 0.5141 -6.7054 -0.9653 36 1 4.9147 -7.6995 -1.3585 37 1 5.6304 -5.8326 -2.6772 38 1 4.4550 -5.0314 -4.5662 39 1 2.0472 -5.8263 -4.8437 40 1 1.6287 -8.1092 -4.9519 41 1 3.5945 -9.7265 -4.7894 42 1 4.9454 -9.5698 -2.8546 43 1 3.9060 -5.5468 0.5453 44 1 4.5490 -5.5655 -1.1118 45 1 3.9880 -3.2410 -0.2216 46 1 3.1576 -3.6632 -1.7434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036727445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:31 Heat of formation + Delta-G solvation = 41.896971 kcal Electronic energy + Delta-G solvation = -27542.551881 eV Core-core repulsion = 24012.479090 eV Total energy + Delta-G solvation = -3530.072790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.88115 -40.19233 -38.09350 -36.78978 -34.63835 -33.30862 -33.19802 -32.96558 -31.21499 -29.67277 -27.46986 -26.60469 -24.84027 -24.55784 -23.65666 -21.91039 -21.56010 -20.70581 -19.37697 -18.51039 -18.36896 -18.13121 -17.16823 -16.88553 -16.74030 -16.09130 -15.95615 -15.63476 -15.27463 -15.12410 -14.82476 -14.38811 -14.29587 -14.07533 -13.73222 -13.44307 -13.27712 -13.19999 -13.07159 -12.92573 -12.80491 -12.62936 -12.43268 -12.06795 -11.98680 -11.83855 -11.72996 -11.58805 -11.47600 -11.13703 -10.98933 -10.80342 -10.68375 -10.09623 -9.59333 -9.07533 -8.85830 -7.81509 -5.16035 0.36444 1.10639 1.46935 1.49949 1.55889 1.70920 2.11717 2.32603 2.52279 3.37249 3.46526 3.65683 3.85952 3.89346 3.91762 4.00846 4.03676 4.11452 4.22425 4.25438 4.26158 4.33316 4.44175 4.53084 4.56593 4.67407 4.73746 4.78481 4.84053 4.88907 4.93992 5.03027 5.06477 5.07295 5.10556 5.24859 5.49125 5.56063 5.56432 5.61005 5.66121 5.69938 5.77130 5.85027 5.89433 5.96298 6.22107 6.51253 7.10616 7.27709 7.81452 8.50692 9.30394 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.003988 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.504587 B = 7019.831755 C = 7502.551048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.615 5.615 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.104 4.104 13 H 0.056 0.944 14 C 0.136 3.864 15 N -0.606 5.606 16 C 0.519 3.481 17 O -0.569 6.569 18 C -0.050 4.050 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.155 4.155 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.113 3.887 26 C -0.120 4.120 27 C 0.160 3.840 28 H 0.019 0.981 29 H 0.244 0.756 30 H 0.004 0.996 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.075 0.925 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.825 -17.572 -4.646 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.358 4.358 8 H 0.107 0.893 9 N -0.339 5.339 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.125 4.125 13 H 0.075 0.925 14 C 0.014 3.986 15 N -0.337 5.337 16 C 0.308 3.692 17 O -0.448 6.448 18 C -0.071 4.071 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.174 4.174 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.010 4.010 26 C -0.159 4.159 27 C 0.053 3.947 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.165 0.835 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.321 -17.723 -4.795 21.570 hybrid contribution -0.558 1.656 -0.159 1.755 sum 10.763 -16.067 -4.953 19.963 Atomic orbital electron populations 1.70167 1.06434 1.25096 1.58837 1.25628 0.96477 1.01007 1.03178 0.85204 0.77120 0.79066 0.78293 1.20264 1.22636 1.20119 1.19390 0.91075 0.83331 1.42003 0.89319 1.44488 1.02105 1.00940 1.86380 1.21277 0.83965 0.91463 0.97508 1.22589 0.97003 0.95700 1.00888 1.22338 0.96382 0.94975 0.98796 0.92525 1.21385 0.83018 0.94537 0.99695 1.48253 1.09159 1.28007 1.48329 1.21030 0.91556 0.79756 0.76887 1.90647 1.48770 1.47582 1.57790 1.19414 0.93603 0.94341 0.99693 1.23077 1.01555 0.94470 0.96390 1.21210 0.94731 1.00374 0.97945 1.21085 0.97472 0.95264 1.03544 1.21112 0.98195 0.93128 0.98102 1.21201 0.95708 0.98570 0.98328 1.23025 0.99664 0.96361 0.95499 1.22042 0.89655 0.87429 1.01855 1.21721 0.97301 0.96466 1.00460 1.20702 0.93404 0.84877 0.95725 0.96344 0.94689 0.97821 0.96657 0.90401 0.90819 0.90207 0.90080 0.84443 0.82661 0.85568 0.88695 0.88043 0.84976 0.83516 0.89955 0.86443 0.90598 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.08 10.43 21.65 0.23 -57.85 16 2 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 3 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.23 -12.46 9.88 84.03 0.83 -11.63 16 8 H 0.09 4.49 7.21 -2.91 -0.02 4.47 16 9 N -0.61 -30.96 3.35 -671.10 -2.25 -33.21 16 10 C 0.18 9.19 5.46 86.85 0.47 9.66 16 11 C -0.12 -4.63 6.54 31.63 0.21 -4.42 16 12 C -0.10 -3.70 2.85 -10.09 -0.03 -3.73 16 13 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 14 C 0.14 4.01 5.95 85.90 0.51 4.52 16 15 N -0.61 -15.86 3.00 -818.02 -2.45 -18.31 16 16 C 0.52 13.63 5.40 87.66 0.47 14.11 16 17 O -0.57 -18.67 13.03 -3.05 -0.04 -18.71 16 18 C -0.05 -0.91 2.11 -13.29 -0.03 -0.94 16 19 C -0.14 -2.40 6.57 24.51 0.16 -2.24 16 20 C -0.12 -2.73 9.58 23.01 0.22 -2.51 16 21 C -0.16 -4.04 8.53 22.89 0.20 -3.85 16 22 C -0.09 -2.21 7.35 22.89 0.17 -2.04 16 23 C -0.12 -2.53 9.09 23.00 0.21 -2.32 16 24 C -0.13 -2.32 8.78 24.49 0.21 -2.11 16 25 C 0.11 2.51 5.84 86.68 0.51 3.01 16 26 C -0.12 -3.75 5.48 30.33 0.17 -3.58 16 27 C 0.16 6.18 2.55 45.31 0.12 6.30 16 28 H 0.02 0.74 7.89 -2.38 -0.02 0.72 16 29 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.00 0.20 7.77 -2.39 -0.02 0.18 16 31 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 32 H 0.08 2.63 8.12 -2.38 -0.02 2.61 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.08 2.54 7.00 -2.39 -0.02 2.52 16 36 H 0.14 1.65 7.99 -2.39 -0.02 1.63 16 37 H 0.16 1.75 7.64 -2.91 -0.02 1.73 16 38 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.09 2.65 8.06 -2.91 -0.02 2.62 16 40 H 0.10 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.12 1.93 4.03 -2.39 -0.01 1.92 16 45 H 0.08 2.35 7.62 -2.39 -0.02 2.33 16 46 H 0.05 1.77 8.13 -2.38 -0.02 1.75 16 Total: -1.00 -71.48 349.86 3.33 -68.15 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.96 Total: 17.83 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.86 Total: -5.29 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -4.48 Total: -109.38 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.04 Total: -18.71 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.48 3.33 -68.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036727445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.051 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds