Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50689 * 115.55465 * 2 1 4 4 C 1.37979 * 120.07663 * 99.68780 * 3 2 1 5 5 C 1.38337 * 120.14493 * 180.02562 * 4 3 2 6 6 C 1.38376 * 120.29741 * 359.97287 * 5 4 3 7 7 C 1.37942 * 120.14394 * 359.75194 * 6 5 4 8 8 C 1.39562 * 120.07353 * 279.66844 * 3 2 1 9 9 C 1.47842 * 120.14329 * 359.97438 * 8 3 2 10 10 O 1.21553 * 120.00149 * 5.24637 * 9 8 3 11 11 N 1.34782 * 119.99881 * 185.23847 * 9 8 3 12 12 C 1.46499 * 119.99571 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47208 * 180.02562 * 12 11 9 14 14 H 1.08999 * 112.77575 * 303.72793 * 13 12 11 15 15 C 1.53494 * 113.47085 * 172.93969 * 13 12 11 16 16 C 1.53498 * 83.34185 * 219.15145 * 15 13 12 17 17 N 1.47062 * 87.99007 * 26.06752 * 16 15 13 18 18 C 1.36937 * 136.06021 * 153.12672 * 17 16 15 19 19 H 1.08006 * 120.00067 * 179.62767 * 18 17 16 20 20 C 1.38808 * 119.99940 * 359.64107 * 18 17 16 21 21 N 1.31622 * 120.00074 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00076 * 179.97438 * 20 18 17 23 23 H 1.48511 * 109.46863 * 59.99969 * 22 20 18 24 24 H 1.48500 * 109.47174 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47342 * 300.00047 * 22 20 18 26 26 C 1.53003 * 117.51218 * 145.70369 * 2 1 3 27 27 C 1.53002 * 60.00061 * 107.47880 * 26 2 1 28 28 H 1.09001 * 109.47009 * 55.42540 * 1 2 3 29 29 H 1.09000 * 109.47806 * 175.43046 * 1 2 3 30 30 H 1.09000 * 109.46947 * 295.42982 * 1 2 3 31 31 H 1.07999 * 119.92339 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.85124 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.92953 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.07531 * 180.27670 * 7 6 5 35 35 H 0.96994 * 119.99946 * 0.02562 * 11 9 8 36 36 H 1.08999 * 109.47399 * 60.00633 * 12 11 9 37 37 H 1.09000 * 109.47448 * 300.00353 * 12 11 9 38 38 H 1.08998 * 114.20613 * 332.73749 * 15 13 12 39 39 H 1.09000 * 114.20341 * 105.37013 * 15 13 12 40 40 H 1.08997 * 113.46877 * 271.28786 * 16 15 13 41 41 H 1.09000 * 113.46484 * 140.84686 * 16 15 13 42 42 H 0.97001 * 119.99719 * 180.02562 * 21 20 18 43 43 H 1.09004 * 117.49305 * 214.96323 * 26 2 1 44 44 H 1.08992 * 117.50142 * 359.97438 * 26 2 1 45 45 H 1.09003 * 117.49604 * 252.50662 * 27 26 2 46 46 H 1.08999 * 117.51594 * 107.48111 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3595 0.0000 4 6 2.6596 1.8966 1.1770 5 6 3.2561 3.1448 1.1787 6 6 3.3766 3.8625 0.0018 7 6 2.9065 3.3346 -1.1827 8 6 2.2987 2.0779 -1.1906 9 6 1.7880 1.5081 -2.4556 10 8 1.1791 0.4561 -2.4463 11 7 1.9975 2.1552 -3.6192 12 6 1.4910 1.5908 -4.8726 13 6 1.8620 2.5144 -6.0346 14 1 1.4995 3.5330 -5.8963 15 6 1.5265 1.9280 -7.4128 16 6 2.8635 2.5675 -7.8122 17 7 3.2827 2.4441 -6.4081 18 6 4.4727 2.3229 -5.7413 19 1 4.4832 2.2540 -4.6635 20 6 5.6653 2.2890 -6.4506 21 7 5.6525 2.3728 -7.7641 22 14 7.2886 2.1244 -5.5411 23 1 7.2957 0.8574 -4.7664 24 1 8.4054 2.1118 -6.5198 25 1 7.4552 3.2723 -4.6139 26 6 2.2368 -1.1211 0.7646 27 6 2.2364 -1.1208 -0.7654 28 1 -0.3633 0.5832 -0.8462 29 1 -0.3635 -1.0244 -0.0819 30 1 -0.3633 0.4413 0.9281 31 1 2.5683 1.3418 2.0990 32 1 3.6302 3.5605 2.1026 33 1 3.8437 4.8362 0.0099 34 1 3.0052 3.8938 -2.1014 35 1 2.4836 2.9945 -3.6267 36 1 0.4066 1.4952 -4.8161 37 1 1.9344 0.6082 -5.0341 38 1 1.5244 0.8385 -7.4465 39 1 0.6537 2.3754 -7.8885 40 1 2.7677 3.6003 -8.1474 41 1 3.4507 1.9546 -8.4960 42 1 6.4860 2.3487 -8.2597 43 1 3.1720 -0.8751 1.2676 44 1 1.6118 -1.8585 1.2681 45 1 1.6111 -1.8584 -1.2686 46 1 3.1711 -0.8747 -1.2692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038689246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = 59.064702 kcal Electronic energy + Delta-G solvation = -26621.468029 eV Core-core repulsion = 23092.139687 eV Total energy + Delta-G solvation = -3529.328342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55873 -40.16532 -39.11774 -38.11057 -35.40033 -34.25578 -32.33046 -31.63240 -29.96686 -29.39765 -28.93385 -25.40142 -25.07051 -24.10288 -23.43819 -23.03595 -21.41692 -20.98178 -20.35015 -19.00174 -18.27280 -17.16103 -17.08833 -16.93657 -16.26385 -15.99195 -15.83097 -15.61070 -15.57413 -15.16768 -15.12215 -14.76210 -14.26624 -13.83135 -13.74957 -13.43494 -13.27150 -13.15620 -13.06981 -12.95762 -12.71766 -12.59913 -12.46326 -12.36068 -12.35342 -11.92872 -11.84143 -11.65624 -11.39897 -11.07839 -10.88931 -10.82439 -10.29643 -10.03115 -9.84288 -9.63640 -8.89652 -7.88368 -5.19716 -0.08312 0.38517 1.41191 1.43851 1.49266 1.97079 2.27363 2.46340 2.86289 2.92035 3.33529 3.43519 3.60490 3.77435 3.91171 3.93608 3.98145 4.07911 4.17346 4.19211 4.25861 4.34028 4.49483 4.52045 4.64940 4.68866 4.77505 4.81148 4.88134 4.91497 4.92359 5.00284 5.04754 5.06298 5.09892 5.17322 5.27110 5.31776 5.34530 5.43313 5.49986 5.50910 5.56542 5.60929 5.74006 5.95986 5.96764 6.62154 6.93263 7.30927 7.63429 8.63392 9.29018 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012890 B = 0.004406 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.686586 B = 6353.502799 C = 7204.428666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.079 4.079 3 C -0.009 4.009 4 C -0.125 4.125 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.096 4.096 8 C -0.150 4.150 9 C 0.542 3.458 10 O -0.547 6.547 11 N -0.714 5.714 12 C 0.136 3.864 13 C 0.132 3.868 14 H 0.068 0.932 15 C -0.134 4.134 16 C 0.143 3.857 17 N -0.628 5.628 18 C -0.206 4.206 19 H 0.083 0.917 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.964 3.036 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.273 1.273 26 C -0.159 4.159 27 C -0.151 4.151 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.245 0.755 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 1.152 18.539 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.010 4.010 4 C -0.143 4.143 5 C -0.106 4.106 6 C -0.150 4.150 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.331 3.669 10 O -0.426 6.426 11 N -0.365 5.365 12 C 0.011 3.989 13 C 0.026 3.974 14 H 0.085 0.915 15 C -0.172 4.172 16 C 0.018 3.982 17 N -0.354 5.354 18 C -0.334 4.334 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.793 3.207 23 H -0.213 1.213 24 H -0.222 1.222 25 H -0.199 1.199 26 C -0.196 4.196 27 C -0.188 4.188 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.178 0.822 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.821 0.373 18.548 20.991 hybrid contribution 1.571 0.373 -0.542 1.703 sum -8.250 0.747 18.006 19.820 Atomic orbital electron populations 1.21112 0.90828 1.01809 1.01069 1.19929 0.94995 0.87303 1.05648 1.19349 0.95394 0.94054 0.92158 1.21272 0.98930 0.96582 0.97485 1.21728 0.95925 0.93638 0.99265 1.21447 1.00116 1.01498 0.91909 1.21529 0.96149 0.93995 0.99832 1.19913 1.05054 0.97005 0.93329 1.18633 0.79877 0.84304 0.84127 1.90732 1.42042 1.22624 1.87226 1.45915 1.57640 1.26445 1.06470 1.21530 0.98260 0.96612 0.82462 1.22569 0.84630 0.96913 0.93324 0.91517 1.23464 0.97755 1.00560 0.95447 1.22042 0.91644 0.96512 0.88042 1.45979 1.00525 1.84726 1.04159 1.19106 0.82755 1.40815 0.90763 0.89958 1.25479 1.00407 1.03823 0.96368 1.69995 1.25731 1.58517 1.05952 0.85366 0.79988 0.78038 0.77304 1.21343 1.22155 1.19883 1.23337 1.02351 1.00220 0.93712 1.22602 1.00700 1.01223 0.94308 0.93682 0.92205 0.91569 0.83182 0.82152 0.83030 0.85463 0.76225 0.90379 0.94193 0.90372 0.88185 0.95925 0.94582 0.94554 0.88165 0.86929 0.89722 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.17 71.98 0.66 -1.60 16 2 C -0.08 -2.05 1.16 -52.93 -0.06 -2.12 16 3 C -0.01 -0.23 5.05 -19.61 -0.10 -0.32 16 4 C -0.12 -2.49 9.31 22.23 0.21 -2.28 16 5 C -0.09 -1.49 10.04 22.33 0.22 -1.27 16 6 C -0.13 -2.60 10.03 22.23 0.22 -2.38 16 7 C -0.10 -2.47 9.53 22.53 0.21 -2.25 16 8 C -0.15 -4.49 5.87 -20.09 -0.12 -4.60 16 9 C 0.54 18.92 7.62 86.78 0.66 19.58 16 10 O -0.55 -20.81 10.85 -3.88 -0.04 -20.85 16 11 N -0.71 -24.68 5.29 -465.97 -2.46 -27.14 16 12 C 0.14 4.87 5.52 86.38 0.48 5.35 16 13 C 0.13 4.91 4.10 41.78 0.17 5.08 16 14 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 15 C -0.13 -4.64 8.03 30.93 0.25 -4.39 16 16 C 0.14 6.59 7.40 83.17 0.62 7.21 16 17 N -0.63 -30.59 3.65 -713.93 -2.61 -33.20 16 18 C -0.21 -11.15 10.55 84.03 0.89 -10.26 16 19 H 0.08 4.28 7.50 -2.91 -0.02 4.26 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.95 -57.55 11.51 21.65 0.25 -57.30 16 22 Si 0.96 46.18 29.55 68.60 2.03 48.21 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.16 -3.43 9.57 30.60 0.29 -3.14 16 27 C -0.15 -4.46 7.55 30.60 0.23 -4.23 16 28 H 0.04 1.33 6.72 -2.39 -0.02 1.31 16 29 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.15 2.22 7.93 -2.91 -0.02 2.19 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.13 3.15 6.44 -2.91 -0.02 3.13 16 35 H 0.40 13.38 6.42 -92.71 -0.60 12.79 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 39 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.04 1.90 7.12 -2.39 -0.02 1.89 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.10 1.94 8.01 -2.38 -0.02 1.92 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.28 372.23 2.84 -66.44 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.38 Total: 28.87 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.30 Total: -5.03 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.82 Total: -117.64 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.04 Total: -20.85 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -69.28 2.84 -66.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038689246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.502 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds