Wall clock time and date at job start Tue Mar 31 2020 10:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47221 * 300.00199 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00116 * 3 2 1 7 7 C 1.38816 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 163.78855 * 7 2 1 9 9 N 1.36937 * 119.99549 * 343.51076 * 7 2 1 10 10 C 1.46941 * 120.67713 * 152.50923 * 9 7 2 11 11 C 1.53190 * 108.87535 * 125.92111 * 10 9 7 12 12 C 1.53125 * 109.29622 * 55.09281 * 11 10 9 13 13 C 1.52484 * 109.62630 * 299.51639 * 12 11 10 14 14 C 1.53824 * 110.26271 * 182.04354 * 13 12 11 15 15 C 1.54506 * 104.79242 * 118.80780 * 14 13 12 16 16 N 1.48183 * 104.63912 * 23.77416 * 15 14 13 17 17 C 1.34774 * 127.80730 * 140.73963 * 16 15 14 18 18 O 1.21552 * 120.00134 * 185.79012 * 17 16 15 19 19 C 1.47844 * 119.99736 * 5.79019 * 17 16 15 20 20 C 1.39585 * 120.14407 * 18.44965 * 19 17 16 21 21 C 1.37961 * 119.85105 * 179.74833 * 20 19 17 22 22 C 1.38362 * 120.14273 * 0.52863 * 21 20 19 23 23 C 1.38359 * 120.29387 * 359.74123 * 22 21 20 24 24 C 1.37959 * 120.14600 * 359.97438 * 23 22 21 25 25 C 1.48265 * 104.38979 * 320.70481 * 16 15 14 26 26 C 1.47024 * 120.68523 * 332.22850 * 9 7 2 27 27 H 0.96999 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.56556 * 245.73502 * 10 9 7 29 29 H 1.08995 * 109.57424 * 6.09779 * 10 9 7 30 30 H 1.08997 * 109.50009 * 175.03437 * 11 10 9 31 31 H 1.08997 * 109.49884 * 295.14530 * 11 10 9 32 32 H 1.09003 * 109.44991 * 59.56696 * 12 11 10 33 33 H 1.09005 * 109.44609 * 179.50569 * 12 11 10 34 34 H 1.09001 * 110.37220 * 237.63596 * 14 13 12 35 35 H 1.08999 * 110.37098 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.40019 * 142.56462 * 15 14 13 37 37 H 1.08995 * 110.40370 * 264.86353 * 15 14 13 38 38 H 1.07997 * 120.07287 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.92536 * 180.27762 * 21 20 19 40 40 H 1.07999 * 119.85028 * 179.76837 * 22 21 20 41 41 H 1.07997 * 119.92743 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.07182 * 179.97438 * 24 23 22 43 43 H 1.08995 * 110.42310 * 280.40843 * 25 16 15 44 44 H 1.08999 * 110.42352 * 157.92817 * 25 16 15 45 45 H 1.08996 * 109.58066 * 352.59704 * 26 9 7 46 46 H 1.09005 * 109.58170 * 113.00350 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0579 -1.2207 -0.2617 9 7 1.3677 -2.3638 0.3356 10 6 1.8234 -3.6544 -0.1992 11 6 2.0722 -4.6145 0.9683 12 6 0.8052 -4.7113 1.8227 13 6 0.4540 -3.3343 2.3757 14 6 -0.7884 -3.4238 3.2784 15 6 -0.3003 -2.9585 4.6685 16 7 0.8865 -2.1172 4.3865 17 6 1.2492 -0.9701 4.9938 18 8 2.1996 -0.3364 4.5781 19 6 0.4911 -0.4824 6.1656 20 6 -0.3311 -1.3545 6.8811 21 6 -1.0317 -0.8942 7.9768 22 6 -0.9293 0.4312 8.3603 23 6 -0.1204 1.3022 7.6521 24 6 0.5901 0.8534 6.5581 25 6 1.5853 -2.8231 3.2857 26 6 0.2115 -2.3460 1.2437 27 1 -0.4850 0.8400 0.0004 28 1 1.0579 -4.0683 -0.8555 29 1 2.7481 -3.5120 -0.7583 30 1 2.3256 -5.6011 0.5803 31 1 2.8946 -4.2404 1.5780 32 1 -0.0187 -5.0772 1.2100 33 1 0.9768 -5.4008 2.6494 34 1 -1.5730 -2.7625 2.9107 35 1 -1.1489 -4.4513 3.3270 36 1 -1.0727 -2.3716 5.1656 37 1 -0.0232 -3.8166 5.2808 38 1 -0.4156 -2.3881 6.5797 39 1 -1.6647 -1.5690 8.5338 40 1 -1.4828 0.7874 9.2166 41 1 -0.0451 2.3357 7.9565 42 1 1.2208 1.5343 6.0059 43 1 2.1655 -3.6586 3.6774 44 1 2.2299 -2.1337 2.7405 45 1 0.0858 -1.3447 1.6554 46 1 -0.6867 -2.6340 0.6973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040046613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:22 Heat of formation + Delta-G solvation = 29.902730 kcal Electronic energy + Delta-G solvation = -27443.491888 eV Core-core repulsion = 23912.898988 eV Total energy + Delta-G solvation = -3530.592900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.37871 -39.00984 -37.61953 -35.76708 -33.13295 -31.86478 -30.99586 -30.72743 -29.89040 -28.83200 -26.00871 -25.24928 -23.87398 -22.60323 -22.31457 -22.16134 -20.33302 -19.64117 -18.11094 -17.07868 -16.61826 -16.43344 -15.61260 -15.51205 -14.84470 -14.54428 -14.36688 -14.01785 -13.77314 -13.64046 -13.53548 -13.26284 -12.97316 -12.86741 -12.50272 -12.25368 -12.22200 -11.95873 -11.66118 -11.40131 -11.19819 -11.03403 -10.87591 -10.79719 -10.57911 -10.31729 -10.19157 -10.07032 -9.77686 -9.57530 -9.43073 -9.34455 -9.03136 -8.97377 -8.41055 -8.28167 -6.60857 -5.71994 -3.13735 0.90842 1.29968 3.06984 3.26274 3.47043 3.56179 3.58000 3.91228 4.57597 4.60591 4.74608 4.84162 4.92363 5.01272 5.12019 5.23164 5.33562 5.40939 5.43575 5.54723 5.57216 5.60975 5.66199 5.72387 5.82126 5.90777 5.98217 6.04820 6.14221 6.24786 6.26936 6.30710 6.34338 6.36686 6.43422 6.46934 6.50646 6.75803 6.79471 6.83687 6.88744 6.93995 7.02359 7.36961 7.70408 7.88179 7.92739 8.51509 8.52136 9.28410 9.92255 10.47282 11.36669 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005479 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.382138 B = 5109.373544 C = 6647.869770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.144 3.856 11 C -0.138 4.138 12 C -0.093 4.093 13 C -0.095 4.095 14 C -0.126 4.126 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.572 3.428 18 O -0.528 6.528 19 C -0.120 4.120 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.103 4.103 23 C -0.129 4.129 24 C -0.063 4.063 25 C 0.124 3.876 26 C 0.188 3.812 27 H 0.251 0.749 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.334 -7.156 15.336 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.177 4.177 12 C -0.131 4.131 13 C -0.098 4.098 14 C -0.165 4.165 15 C -0.034 4.034 16 N -0.345 5.345 17 C 0.361 3.639 18 O -0.405 6.405 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.147 4.147 24 C -0.081 4.081 25 C 0.002 3.998 26 C 0.062 3.938 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.861 -6.555 15.120 16.926 hybrid contribution 0.248 0.826 0.044 0.863 sum -3.613 -5.729 15.165 16.609 Atomic orbital electron populations 1.70015 1.05259 1.25238 1.54256 1.24957 0.95223 0.98264 1.00583 0.86284 0.79620 0.84247 0.77048 1.20203 1.21918 1.21439 1.19167 0.92303 0.84642 1.41811 0.91746 1.44049 1.34815 1.01521 1.50868 1.20906 0.97483 0.86996 0.92851 1.22072 0.97432 0.99022 0.99190 1.21374 0.98186 0.95123 0.98382 1.21779 0.93311 0.97515 0.97196 1.22593 0.98658 1.01364 0.93867 1.22813 0.88370 0.94045 0.98133 1.48811 1.26258 1.22669 1.36797 1.17849 0.84150 0.79303 0.82558 1.90815 1.29404 1.55211 1.65118 1.20028 0.99918 0.95162 0.97212 1.21985 0.94776 1.00687 0.94797 1.21107 1.00484 0.96049 0.97276 1.21327 0.97812 0.93712 0.99237 1.21138 0.97608 1.00075 0.95877 1.21333 0.96860 0.94515 0.95435 1.22434 0.95376 0.95710 0.86280 1.20667 0.88474 0.97486 0.87161 0.93867 0.96565 0.92932 0.93119 0.92321 0.92327 0.93444 0.90561 0.90832 0.89698 0.91310 0.83996 0.85623 0.85869 0.85495 0.84781 0.92570 0.87986 0.89158 0.96471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 11.16 55.49 0.62 -26.31 16 2 C 0.01 0.24 4.93 -17.43 -0.09 0.15 16 3 Si 0.90 23.38 29.58 -169.99 -5.03 18.35 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 7 C -0.25 -7.04 9.60 -15.06 -0.14 -7.19 16 8 H 0.06 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.77 2.51 -172.82 -0.43 -15.21 16 10 C 0.14 3.00 6.50 -3.70 -0.02 2.98 16 11 C -0.14 -2.33 5.89 -26.57 -0.16 -2.48 16 12 C -0.09 -1.45 4.34 -26.93 -0.12 -1.57 16 13 C -0.10 -1.71 0.68 -154.26 -0.11 -1.81 16 14 C -0.13 -1.82 6.29 -25.51 -0.16 -1.98 16 15 C 0.09 1.18 5.09 -2.33 -0.01 1.17 16 16 N -0.61 -10.85 3.32 -170.50 -0.57 -11.41 16 17 C 0.57 11.20 7.76 -12.33 -0.10 11.10 16 18 O -0.53 -12.65 16.76 5.32 0.09 -12.56 16 19 C -0.12 -1.89 5.80 -104.97 -0.61 -2.50 16 20 C -0.10 -1.27 8.07 -39.18 -0.32 -1.59 16 21 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 22 C -0.10 -1.02 10.04 -39.49 -0.40 -1.41 16 23 C -0.13 -1.48 10.03 -39.64 -0.40 -1.87 16 24 C -0.06 -0.92 9.59 -39.19 -0.38 -1.30 16 25 C 0.12 2.34 5.00 -2.59 -0.01 2.32 16 26 C 0.19 4.42 3.62 -4.15 -0.02 4.40 16 27 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.03 7.21 -51.93 -0.37 0.66 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 34 H 0.08 1.20 7.70 -51.93 -0.40 0.80 16 35 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 36 H 0.08 1.01 5.48 -51.93 -0.28 0.73 16 37 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 38 H 0.14 1.48 4.47 -52.49 -0.23 1.25 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 2.10 7.77 -52.49 -0.41 1.69 16 43 H 0.06 0.95 7.70 -51.93 -0.40 0.55 16 44 H 0.10 2.42 7.19 -51.93 -0.37 2.05 16 45 H 0.09 2.48 6.05 -51.93 -0.31 2.17 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -33.57 356.07 -10.32 -43.89 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.94 Total: 1.19 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -3.42 Total: -3.30 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.38 Total: -52.93 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.03 Total: 18.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.57 -10.32 -43.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040046613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.792 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds