Wall clock time and date at job start Tue Mar 31 2020 10:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47221 * 300.00199 * 3 2 1 6 6 H 1.48503 * 109.46910 * 60.00116 * 3 2 1 7 7 C 1.38816 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 163.78855 * 7 2 1 9 9 N 1.36937 * 119.99549 * 343.51076 * 7 2 1 10 10 C 1.46941 * 120.67713 * 152.50923 * 9 7 2 11 11 C 1.53190 * 108.87535 * 125.92111 * 10 9 7 12 12 C 1.53125 * 109.29622 * 55.09281 * 11 10 9 13 13 C 1.52484 * 109.62630 * 299.51639 * 12 11 10 14 14 C 1.53824 * 110.26271 * 182.04354 * 13 12 11 15 15 C 1.54506 * 104.79242 * 118.80780 * 14 13 12 16 16 N 1.48183 * 104.63912 * 23.77416 * 15 14 13 17 17 C 1.34774 * 127.80730 * 140.73963 * 16 15 14 18 18 O 1.21552 * 120.00134 * 185.79012 * 17 16 15 19 19 C 1.47844 * 119.99736 * 5.79019 * 17 16 15 20 20 C 1.39585 * 120.14407 * 18.44965 * 19 17 16 21 21 C 1.37961 * 119.85105 * 179.74833 * 20 19 17 22 22 C 1.38362 * 120.14273 * 0.52863 * 21 20 19 23 23 C 1.38359 * 120.29387 * 359.74123 * 22 21 20 24 24 C 1.37959 * 120.14600 * 359.97438 * 23 22 21 25 25 C 1.48265 * 104.38979 * 320.70481 * 16 15 14 26 26 C 1.47024 * 120.68523 * 332.22850 * 9 7 2 27 27 H 0.96999 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.56556 * 245.73502 * 10 9 7 29 29 H 1.08995 * 109.57424 * 6.09779 * 10 9 7 30 30 H 1.08997 * 109.50009 * 175.03437 * 11 10 9 31 31 H 1.08997 * 109.49884 * 295.14530 * 11 10 9 32 32 H 1.09003 * 109.44991 * 59.56696 * 12 11 10 33 33 H 1.09005 * 109.44609 * 179.50569 * 12 11 10 34 34 H 1.09001 * 110.37220 * 237.63596 * 14 13 12 35 35 H 1.08999 * 110.37098 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.40019 * 142.56462 * 15 14 13 37 37 H 1.08995 * 110.40370 * 264.86353 * 15 14 13 38 38 H 1.07997 * 120.07287 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.92536 * 180.27762 * 21 20 19 40 40 H 1.07999 * 119.85028 * 179.76837 * 22 21 20 41 41 H 1.07997 * 119.92743 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.07182 * 179.97438 * 24 23 22 43 43 H 1.08995 * 110.42310 * 280.40843 * 25 16 15 44 44 H 1.08999 * 110.42352 * 157.92817 * 25 16 15 45 45 H 1.08996 * 109.58066 * 352.59704 * 26 9 7 46 46 H 1.09005 * 109.58170 * 113.00350 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0579 -1.2207 -0.2617 9 7 1.3677 -2.3638 0.3356 10 6 1.8234 -3.6544 -0.1992 11 6 2.0722 -4.6145 0.9683 12 6 0.8052 -4.7113 1.8227 13 6 0.4540 -3.3343 2.3757 14 6 -0.7884 -3.4238 3.2784 15 6 -0.3003 -2.9585 4.6685 16 7 0.8865 -2.1172 4.3865 17 6 1.2492 -0.9701 4.9938 18 8 2.1996 -0.3364 4.5781 19 6 0.4911 -0.4824 6.1656 20 6 -0.3311 -1.3545 6.8811 21 6 -1.0317 -0.8942 7.9768 22 6 -0.9293 0.4312 8.3603 23 6 -0.1204 1.3022 7.6521 24 6 0.5901 0.8534 6.5581 25 6 1.5853 -2.8231 3.2857 26 6 0.2115 -2.3460 1.2437 27 1 -0.4850 0.8400 0.0004 28 1 1.0579 -4.0683 -0.8555 29 1 2.7481 -3.5120 -0.7583 30 1 2.3256 -5.6011 0.5803 31 1 2.8946 -4.2404 1.5780 32 1 -0.0187 -5.0772 1.2100 33 1 0.9768 -5.4008 2.6494 34 1 -1.5730 -2.7625 2.9107 35 1 -1.1489 -4.4513 3.3270 36 1 -1.0727 -2.3716 5.1656 37 1 -0.0232 -3.8166 5.2808 38 1 -0.4156 -2.3881 6.5797 39 1 -1.6647 -1.5690 8.5338 40 1 -1.4828 0.7874 9.2166 41 1 -0.0451 2.3357 7.9565 42 1 1.2208 1.5343 6.0059 43 1 2.1655 -3.6586 3.6774 44 1 2.2299 -2.1337 2.7405 45 1 0.0858 -1.3447 1.6554 46 1 -0.6867 -2.6340 0.6973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040046613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:20 Heat of formation + Delta-G solvation = 9.031381 kcal Electronic energy + Delta-G solvation = -27444.396937 eV Core-core repulsion = 23912.898988 eV Total energy + Delta-G solvation = -3531.497949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70247 -40.26194 -38.95302 -37.37687 -34.97438 -33.31391 -32.01834 -31.92567 -31.64550 -30.16331 -27.61037 -27.09965 -25.13435 -23.95970 -23.65691 -23.35767 -21.88593 -20.85973 -19.71553 -18.56582 -18.32580 -17.55412 -16.91917 -16.85554 -16.71510 -15.84541 -15.65461 -15.47355 -15.26876 -15.19459 -14.75136 -14.65112 -14.41203 -14.31733 -13.85417 -13.59808 -13.57324 -13.25422 -13.13481 -12.90323 -12.87383 -12.60065 -12.56075 -12.36456 -12.18672 -11.91320 -11.86606 -11.73942 -11.40356 -11.02633 -10.98558 -10.95731 -10.58325 -10.02662 -9.93080 -9.65676 -8.69106 -7.94149 -5.35879 -0.11352 0.39558 1.28995 1.36896 1.42187 1.77897 1.98759 2.41890 2.86999 3.21957 3.40856 3.64673 3.71315 3.88960 3.94473 3.99727 4.03647 4.20033 4.28895 4.32948 4.38452 4.44176 4.47157 4.52225 4.57235 4.68268 4.80615 4.84966 4.93401 4.95434 4.98463 5.04509 5.10326 5.12914 5.19358 5.23050 5.36932 5.40232 5.40621 5.48540 5.49314 5.50923 5.56244 5.69990 5.77556 5.96171 6.34469 6.56475 7.08981 7.11601 7.85808 8.32952 9.10925 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.005479 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.382138 B = 5109.373544 C = 6647.869770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.305 1.305 7 C -0.250 4.250 8 H 0.058 0.942 9 N -0.609 5.609 10 C 0.137 3.863 11 C -0.129 4.129 12 C -0.087 4.087 13 C -0.089 4.089 14 C -0.120 4.120 15 C 0.088 3.912 16 N -0.616 5.616 17 C 0.558 3.442 18 O -0.599 6.599 19 C -0.151 4.151 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.094 4.094 25 C 0.127 3.873 26 C 0.200 3.800 27 H 0.246 0.754 28 H 0.018 0.982 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.039 0.961 46 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 -10.581 18.677 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.233 1.233 7 C -0.381 4.381 8 H 0.075 0.925 9 N -0.332 5.332 10 C 0.011 3.989 11 C -0.168 4.168 12 C -0.125 4.125 13 C -0.092 4.092 14 C -0.159 4.159 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.349 3.651 18 O -0.481 6.481 19 C -0.154 4.154 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.108 4.108 23 C -0.148 4.148 24 C -0.113 4.113 25 C 0.004 3.996 26 C 0.074 3.926 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.134 0.866 38 H 0.181 0.819 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.166 0.834 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -5.862 -10.044 18.455 21.813 hybrid contribution 0.855 1.878 -0.986 2.287 sum -5.007 -8.166 17.469 19.923 Atomic orbital electron populations 1.70132 1.06127 1.25126 1.56120 1.25506 0.95915 1.00577 1.01754 0.85528 0.78983 0.81579 0.76448 1.19587 1.20658 1.23325 1.19391 0.92228 0.86300 1.40145 0.92476 1.44297 1.34937 1.02150 1.51801 1.21119 0.96905 0.86026 0.94800 1.21964 0.98038 0.99309 0.97451 1.21396 0.97553 0.93889 0.99629 1.21603 0.94903 0.97293 0.95356 1.22615 0.96209 1.03684 0.93367 1.23194 0.86997 0.94919 0.98139 1.48985 1.27390 1.22522 1.35879 1.18682 0.83737 0.79171 0.83472 1.90752 1.32576 1.57312 1.67475 1.19895 1.02106 0.96255 0.97159 1.22205 0.93738 1.00970 0.94894 1.21624 0.99435 0.96729 0.96046 1.21845 0.96209 0.93411 0.99317 1.21403 0.97062 1.01668 0.94631 1.21314 0.98391 0.94341 0.97273 1.22288 0.95366 0.95108 0.86792 1.20390 0.87160 0.96643 0.88384 0.94510 0.96407 0.93679 0.89377 0.93320 0.91391 0.88957 0.92645 0.86268 0.88118 0.86618 0.81919 0.81297 0.81843 0.83442 0.88009 0.89635 0.94127 0.94202 0.98783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.93 11.16 21.65 0.24 -58.69 16 2 C -0.04 -2.58 4.93 84.86 0.42 -2.16 16 3 Si 0.94 51.13 29.58 68.60 2.03 53.16 16 4 H -0.27 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.31 -17.27 7.11 99.48 0.71 -16.56 16 7 C -0.25 -14.94 9.60 84.03 0.81 -14.14 16 8 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.61 -31.86 2.51 -700.68 -1.76 -33.62 16 10 C 0.14 5.73 6.50 86.36 0.56 6.29 16 11 C -0.13 -4.04 5.89 30.70 0.18 -3.86 16 12 C -0.09 -2.40 4.34 30.47 0.13 -2.26 16 13 C -0.09 -3.10 0.68 -52.02 -0.04 -3.13 16 14 C -0.12 -3.13 6.29 31.38 0.20 -2.93 16 15 C 0.09 2.03 5.09 86.57 0.44 2.47 16 16 N -0.62 -22.02 3.32 -811.63 -2.69 -24.71 16 17 C 0.56 23.27 7.76 86.79 0.67 23.95 16 18 O -0.60 -31.81 16.76 -3.88 -0.07 -31.87 16 19 C -0.15 -4.88 5.80 -20.09 -0.12 -4.99 16 20 C -0.10 -2.15 8.07 22.53 0.18 -1.97 16 21 C -0.12 -1.83 10.03 22.23 0.22 -1.61 16 22 C -0.09 -1.40 10.04 22.33 0.22 -1.18 16 23 C -0.13 -2.81 10.03 22.23 0.22 -2.59 16 24 C -0.09 -2.95 9.59 22.53 0.22 -2.73 16 25 C 0.13 4.84 5.00 86.35 0.43 5.27 16 26 C 0.20 9.82 3.62 86.02 0.31 10.13 16 27 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.64 7.21 -2.39 -0.02 1.62 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.85 8.13 -2.38 -0.02 1.83 16 34 H 0.05 1.69 7.70 -2.39 -0.02 1.67 16 35 H 0.12 2.08 7.70 -2.39 -0.02 2.06 16 36 H 0.10 2.04 5.48 -2.39 -0.01 2.03 16 37 H 0.12 1.70 7.89 -2.39 -0.02 1.68 16 38 H 0.16 2.67 4.47 -2.91 -0.01 2.65 16 39 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.10 3.70 7.77 -2.91 -0.02 3.68 16 43 H 0.09 2.73 7.70 -2.39 -0.02 2.71 16 44 H 0.04 2.06 7.19 -2.39 -0.02 2.04 16 45 H 0.04 2.35 6.05 -2.39 -0.01 2.34 16 46 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 Total: -1.00 -85.58 356.07 3.79 -81.79 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.97 Total: 9.38 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.07 Total: 4.56 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -4.21 Total: -117.02 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.07 Total: -31.87 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.03 Total: 53.16 kcal Total: -85.58 3.79 -81.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040046613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.823 kcal (2) G-P(sol) polarization free energy of solvation -85.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds