Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47116 * 125.76654 * 359.69183 * 9 7 2 11 11 C 1.54595 * 107.23862 * 177.31652 * 10 9 7 12 12 C 1.54414 * 102.52514 * 338.65809 * 11 10 9 13 13 H 1.09006 * 110.71418 * 279.24622 * 12 11 10 14 14 C 1.48209 * 125.76670 * 179.97438 * 9 7 2 15 15 H 1.09004 * 111.52410 * 326.98358 * 14 9 7 16 16 C 1.53014 * 107.11855 * 89.10081 * 14 9 7 17 17 C 1.52734 * 110.79816 * 168.08349 * 16 14 9 18 18 C 1.53458 * 108.44005 * 296.22623 * 17 16 14 19 19 N 1.45123 * 111.61367 * 156.39126 * 12 11 10 20 20 C 1.34768 * 119.57652 * 111.32744 * 19 12 11 21 21 O 1.21285 * 120.00422 * 0.02562 * 20 19 12 22 22 C 1.50708 * 120.00142 * 180.02562 * 20 19 12 23 23 C 1.50291 * 109.46231 * 300.01516 * 22 20 19 24 24 C 1.32313 * 121.60891 * 303.32875 * 23 22 20 25 25 C 1.45202 * 123.00411 * 1.01187 * 24 23 22 26 26 C 1.32946 * 125.19598 * 319.53320 * 25 24 23 27 27 C 1.45196 * 125.19945 * 0.02562 * 26 25 24 28 28 C 1.32297 * 123.02576 * 40.43598 * 27 26 25 29 29 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.88404 * 296.84986 * 10 9 7 31 31 H 1.09002 * 109.88940 * 58.03037 * 10 9 7 32 32 H 1.08994 * 110.94212 * 220.31059 * 11 10 9 33 33 H 1.09001 * 110.77549 * 96.91989 * 11 10 9 34 34 H 1.09000 * 109.21250 * 288.42439 * 16 14 9 35 35 H 1.08999 * 109.20735 * 47.78764 * 16 14 9 36 36 H 1.09006 * 109.64396 * 55.90787 * 17 16 14 37 37 H 1.08997 * 109.64187 * 176.33106 * 17 16 14 38 38 H 1.09004 * 109.83490 * 177.59756 * 18 17 16 39 39 H 1.08998 * 109.83587 * 298.55020 * 18 17 16 40 40 H 1.09002 * 109.46250 * 60.00223 * 22 20 19 41 41 H 1.07996 * 119.20155 * 123.31951 * 23 22 20 42 42 H 1.08005 * 118.50802 * 181.02249 * 24 23 22 43 43 H 1.07994 * 117.39776 * 139.54858 * 25 24 23 44 44 H 1.08004 * 117.39536 * 179.97438 * 26 25 24 45 45 H 1.07998 * 118.48962 * 220.45916 * 27 26 25 46 46 H 1.07994 * 119.20604 * 179.00259 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0064 11 6 -0.4460 -4.0492 -0.0651 12 6 0.8582 -4.6288 -0.6546 13 1 0.8808 -4.5042 -1.7373 14 6 1.9340 -3.7395 0.0005 15 1 2.8735 -3.7552 -0.5520 16 6 2.1398 -4.1408 1.4627 17 6 2.4861 -5.6242 1.5744 18 6 1.2893 -6.4414 1.0696 19 7 1.0228 -6.0297 -0.3134 20 6 0.9299 -6.9649 -1.2793 21 8 0.7106 -6.6336 -2.4252 22 6 1.0986 -8.4226 -0.9356 23 6 2.4632 -8.6434 -0.3459 24 6 3.5636 -8.3052 -0.9982 25 6 3.5457 -7.6820 -2.3095 26 6 2.7261 -8.0112 -3.3033 27 6 1.7119 -9.0484 -3.2429 28 6 0.9499 -9.2509 -2.1805 29 1 -0.4850 0.8401 0.0004 30 1 -0.5496 -2.1148 0.9238 31 1 -0.5653 -2.0311 -0.8601 32 1 -1.2901 -4.2441 -0.7265 33 1 -0.6342 -4.4529 0.9297 34 1 2.9521 -3.5500 1.8859 35 1 1.2245 -3.9437 2.0209 36 1 3.3625 -5.8428 0.9642 37 1 2.6922 -5.8750 2.6149 38 1 1.5284 -7.5045 1.0995 39 1 0.4160 -6.2403 1.6901 40 1 0.3382 -8.7153 -0.2115 41 1 2.5478 -9.0888 0.6343 42 1 4.5189 -8.5018 -0.5342 43 1 4.2546 -6.8881 -2.4922 44 1 2.8220 -7.4628 -4.2288 45 1 1.5733 -9.6842 -4.1049 46 1 0.2030 -10.0303 -2.2086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049500531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = 41.335873 kcal Electronic energy + Delta-G solvation = -27781.874351 eV Core-core repulsion = 24251.777229 eV Total energy + Delta-G solvation = -3530.097122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99995 -40.10879 -37.93283 -36.79993 -34.34130 -33.71331 -33.15273 -33.04154 -30.81521 -29.74944 -27.63651 -26.24339 -25.68167 -24.47910 -23.26423 -22.26586 -21.81270 -19.93951 -19.24163 -18.75855 -18.50554 -18.14383 -17.35509 -16.85184 -16.77612 -16.05761 -15.83123 -15.29561 -15.23219 -15.15456 -14.84335 -14.49404 -14.24132 -14.03746 -13.77432 -13.48938 -13.25657 -13.16415 -13.04789 -12.84037 -12.76496 -12.58635 -12.32017 -12.25379 -12.06477 -11.89268 -11.77132 -11.58909 -11.50044 -11.17049 -11.09993 -10.77332 -10.72376 -10.07874 -9.52075 -9.05592 -8.88934 -7.85218 -5.21085 0.38725 1.12845 1.43655 1.45855 1.54290 1.72491 2.12435 2.33547 2.49388 3.32506 3.54843 3.63797 3.87187 3.90196 3.96322 4.04113 4.09200 4.12399 4.18545 4.21158 4.25938 4.35993 4.39549 4.57630 4.59985 4.65811 4.69271 4.80707 4.85640 4.88109 4.99987 5.04554 5.08979 5.11501 5.21887 5.38965 5.40586 5.56630 5.57831 5.64439 5.68191 5.72824 5.75122 5.89103 5.91926 5.97533 6.17327 6.57798 7.07943 7.32497 7.74410 8.40168 9.24813 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.003952 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.053694 B = 7083.406435 C = 7149.618263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.296 1.296 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.619 5.619 10 C 0.193 3.807 11 C -0.133 4.133 12 C 0.152 3.848 13 H 0.061 0.939 14 C 0.153 3.847 15 H 0.042 0.958 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.098 3.902 19 N -0.588 5.588 20 C 0.513 3.487 21 O -0.576 6.576 22 C -0.047 4.047 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.154 4.154 26 C -0.095 4.095 27 C -0.121 4.121 28 C -0.129 4.129 29 H 0.246 0.754 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.167 0.833 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -23.937 3.660 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.210 1.210 5 H -0.196 1.196 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.097 0.903 9 N -0.344 5.344 10 C 0.067 3.933 11 C -0.172 4.172 12 C 0.046 3.954 13 H 0.079 0.921 14 C 0.046 3.954 15 H 0.060 0.940 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.023 4.023 19 N -0.319 5.319 20 C 0.303 3.697 21 O -0.455 6.455 22 C -0.068 4.068 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.172 4.172 26 C -0.113 4.113 27 C -0.139 4.139 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.157 0.843 41 H 0.184 0.816 42 H 0.157 0.843 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.147 0.853 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.200 -23.511 3.049 24.077 hybrid contribution 0.233 2.048 -0.640 2.158 sum 4.433 -21.462 2.409 22.048 Atomic orbital electron populations 1.70184 1.06289 1.25195 1.58418 1.25610 0.96551 1.00864 1.02719 0.85103 0.77559 0.79261 0.77565 1.20973 1.19620 1.22222 1.19389 0.90824 0.83594 1.42765 0.90261 1.44970 1.01981 1.00648 1.86775 1.20838 0.84045 0.90739 0.97673 1.22907 0.96995 0.96076 1.01234 1.21096 0.95024 0.80873 0.98380 0.92112 1.21520 0.93997 0.84388 0.95485 0.94000 1.21894 1.00775 0.96845 0.96330 1.21848 0.98009 0.93108 1.02906 1.22311 0.98348 1.01354 0.80252 1.47519 1.70162 1.04513 1.09666 1.21287 0.75068 0.88951 0.84395 1.90672 1.50215 1.82903 1.21759 1.19414 0.99540 0.89176 0.98648 1.23141 0.90263 1.01189 1.00570 1.21259 0.99960 0.98752 0.93921 1.21164 1.01187 1.00140 0.94751 1.21101 0.95015 0.96403 0.98805 1.21174 0.96434 0.97084 0.99173 1.23031 0.99367 1.00463 0.91835 0.94455 0.97047 0.97420 0.91826 0.89821 0.93693 0.93091 0.91620 0.87905 0.85419 0.90437 0.84264 0.81580 0.84283 0.88515 0.88887 0.85333 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.69 10.33 21.65 0.22 -58.47 16 2 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.24 -13.57 10.29 84.03 0.86 -12.71 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -32.51 2.91 -667.05 -1.94 -34.45 16 10 C 0.19 9.93 5.19 86.80 0.45 10.38 16 11 C -0.13 -5.26 6.08 31.62 0.19 -5.07 16 12 C 0.15 5.87 3.10 46.13 0.14 6.02 16 13 H 0.06 2.81 6.96 -2.38 -0.02 2.79 16 14 C 0.15 6.40 3.59 45.07 0.16 6.57 16 15 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 16 C -0.12 -4.00 5.10 30.51 0.16 -3.84 16 17 C -0.12 -2.61 6.11 30.66 0.19 -2.43 16 18 C 0.10 1.91 5.61 86.49 0.48 2.39 16 19 N -0.59 -16.78 2.73 -794.61 -2.17 -18.95 16 20 C 0.51 14.79 5.39 87.66 0.47 15.27 16 21 O -0.58 -21.96 12.99 -3.05 -0.04 -22.00 16 22 C -0.05 -0.86 2.11 -13.29 -0.03 -0.88 16 23 C -0.13 -1.90 6.61 24.48 0.16 -1.74 16 24 C -0.12 -2.20 9.58 22.99 0.22 -1.98 16 25 C -0.15 -3.86 8.53 22.89 0.20 -3.67 16 26 C -0.10 -2.54 7.35 22.89 0.17 -2.37 16 27 C -0.12 -2.72 9.09 22.99 0.21 -2.51 16 28 C -0.13 -2.47 8.77 24.48 0.21 -2.25 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.01 0.64 7.61 -2.38 -0.02 0.62 16 31 H 0.01 0.45 7.28 -2.39 -0.02 0.43 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.89 6.81 -2.39 -0.02 2.87 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.84 7.12 -2.39 -0.02 1.82 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.13 1.50 4.13 -2.39 -0.01 1.49 16 39 H 0.08 1.41 7.53 -2.39 -0.02 1.40 16 40 H 0.14 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.17 0.99 7.65 -2.91 -0.02 0.97 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.10 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.09 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 46 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.12 347.99 3.78 -72.35 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.96 Total: 14.75 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 4.72 Total: -2.13 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -3.89 Total: -111.87 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.04 Total: -22.00 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.12 3.78 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049500531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.683 kcal (2) G-P(sol) polarization free energy of solvation -76.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds