Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53779 * 113.61477 * 2 1 4 4 C 1.53787 * 87.07963 * 89.11553 * 3 2 1 5 5 C 1.50702 * 113.61150 * 139.98062 * 4 3 2 6 6 O 1.21281 * 120.00409 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99757 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99817 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46850 * 179.97438 * 8 7 5 10 10 C 1.38252 * 120.01833 * 90.00269 * 9 8 7 11 11 C 1.38150 * 119.96072 * 180.02562 * 10 9 8 12 12 C 1.38443 * 120.10154 * 359.97438 * 11 10 9 13 13 C 1.38062 * 119.93918 * 0.02562 * 12 11 10 14 14 C 1.38145 * 120.01892 * 269.72772 * 9 8 7 15 15 C 1.50772 * 108.86614 * 180.02562 * 13 12 11 16 16 N 1.46637 * 107.70188 * 0.02562 * 15 13 12 17 17 C 1.36938 * 126.56769 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99906 * 359.97438 * 17 16 15 19 19 C 1.38810 * 119.99925 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00504 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99785 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47232 * 89.99531 * 21 19 17 23 23 H 1.48497 * 109.47137 * 209.99548 * 21 19 17 24 24 H 1.48503 * 109.46784 * 329.99521 * 21 19 17 25 25 C 1.46640 * 106.87200 * 359.97438 * 16 15 13 26 26 C 1.53779 * 113.61419 * 97.50083 * 2 1 3 27 27 H 1.08999 * 109.46973 * 59.99724 * 1 2 3 28 28 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46800 * 300.00068 * 1 2 3 30 30 H 1.08999 * 112.85002 * 228.80846 * 2 1 3 31 31 H 1.08997 * 113.61646 * 334.57185 * 3 2 1 32 32 H 1.09000 * 113.61527 * 203.66456 * 3 2 1 33 33 H 1.08994 * 113.61447 * 270.88515 * 4 3 2 34 34 H 0.97001 * 119.99544 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.47515 * 299.99778 * 8 7 5 36 36 H 1.09003 * 109.47376 * 60.00133 * 8 7 5 37 37 H 1.07994 * 120.01717 * 359.97438 * 10 9 8 38 38 H 1.07996 * 119.94767 * 179.97438 * 11 10 9 39 39 H 1.08006 * 119.95244 * 359.97438 * 14 9 8 40 40 H 1.09006 * 109.81495 * 119.54350 * 15 13 12 41 41 H 1.08995 * 109.81588 * 240.44764 * 15 13 12 42 42 H 0.96994 * 120.00496 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.81112 * 240.46032 * 25 16 15 44 44 H 1.08992 * 109.81216 * 119.55057 * 25 16 15 45 45 H 1.09002 * 113.61557 * 156.33538 * 26 2 1 46 46 H 1.09004 * 113.61501 * 25.42959 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0930 1.3467 1.5357 5 6 3.3079 1.9346 2.2060 6 8 4.2064 2.3972 1.5354 7 7 3.3961 1.9464 3.5509 8 6 4.5774 2.5174 4.2025 9 6 4.4280 2.4083 5.6982 10 6 4.8914 1.2862 6.3595 11 6 4.7534 1.1872 7.7306 12 6 4.1520 2.2103 8.4435 13 6 3.6891 3.3309 7.7831 14 6 3.8329 3.4320 6.4097 15 6 3.0866 4.2767 8.7909 16 7 3.2130 3.6579 10.1142 17 6 2.7913 4.1857 11.3053 18 1 2.3112 5.1529 11.3276 19 6 2.9808 3.4776 12.4841 20 7 3.5654 2.2987 12.4571 21 14 2.4061 4.1980 14.1091 22 1 1.0071 3.7747 14.3710 23 1 3.2836 3.7119 15.2040 24 1 2.4708 5.6802 14.0438 25 6 3.8766 2.3650 9.9179 26 6 2.1461 -0.1839 1.3970 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9533 -0.6615 -0.7559 31 1 1.4946 2.1704 -0.4288 32 1 3.1591 1.4427 -0.4009 33 1 1.1569 1.7149 1.9555 34 1 2.6773 1.5768 4.0872 35 1 5.4665 1.9725 3.8852 36 1 4.6751 3.5664 3.9231 37 1 5.3604 0.4872 5.8046 38 1 5.1151 0.3104 8.2469 39 1 3.4753 4.3107 5.8935 40 1 3.6232 5.2253 8.7743 41 1 2.0345 4.4424 8.5591 42 1 3.6975 1.8038 13.2807 43 1 3.2254 1.5601 10.2586 44 1 4.8143 2.3429 10.4730 45 1 3.1591 -0.5858 1.3780 46 1 1.4945 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054261076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = 11.399276 kcal Electronic energy + Delta-G solvation = -24955.501152 eV Core-core repulsion = 21424.105882 eV Total energy + Delta-G solvation = -3531.395270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48060 -41.00184 -38.99289 -37.80121 -35.71444 -34.09845 -32.55138 -31.49813 -30.53246 -28.97605 -27.73885 -26.60914 -26.45662 -24.90723 -23.57936 -22.11503 -21.62535 -21.41131 -19.50186 -19.00854 -18.56444 -17.25502 -17.11834 -16.59437 -16.28696 -16.11503 -16.07774 -15.87551 -15.37709 -15.15882 -14.89080 -14.51755 -14.37645 -13.90622 -13.60547 -13.50124 -13.48220 -13.36068 -13.24240 -13.10634 -13.05894 -13.02748 -12.70362 -12.16305 -12.10990 -11.98881 -11.88283 -11.83664 -11.64986 -11.23429 -11.15974 -10.96613 -10.70027 -10.09607 -9.73298 -9.58512 -8.86085 -7.94404 -5.31477 0.26365 0.43907 1.45529 1.48228 1.57077 1.63538 2.26429 2.44045 2.86403 3.28031 3.45235 3.52848 3.54401 3.65026 3.75192 3.80702 3.84292 3.96045 4.11566 4.21964 4.34010 4.49703 4.57018 4.63542 4.66963 4.73197 4.76978 4.79058 4.82821 4.85684 4.96286 4.97212 5.07882 5.15598 5.16650 5.26692 5.28520 5.30989 5.39209 5.40912 5.44810 5.51053 5.55886 5.59422 5.85273 6.03420 6.08804 6.57530 6.99432 7.25856 7.64267 8.32094 9.18791 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.002236 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.802339 B =12517.070823 C =12803.207482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 C -0.119 4.119 4 C -0.136 4.136 5 C 0.520 3.480 6 O -0.586 6.586 7 N -0.715 5.715 8 C 0.174 3.826 9 C -0.108 4.108 10 C -0.088 4.088 11 C -0.110 4.110 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.076 4.076 15 C 0.171 3.829 16 N -0.625 5.625 17 C -0.245 4.245 18 H 0.091 0.909 19 C -0.065 4.065 20 N -0.953 5.953 21 Si 0.988 3.012 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.266 1.266 25 C 0.221 3.779 26 C -0.115 4.115 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.025 0.975 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 -5.731 -24.167 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.157 4.157 4 C -0.157 4.157 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.366 5.366 8 C 0.051 3.949 9 C -0.108 4.108 10 C -0.106 4.106 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.095 4.095 15 C 0.046 3.954 16 N -0.352 5.352 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.258 4.258 20 N -0.601 5.601 21 Si 0.815 3.185 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.191 1.191 25 C 0.096 3.904 26 C -0.153 4.153 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.322 -5.415 -24.404 25.217 hybrid contribution -0.270 0.215 1.820 1.852 sum -3.592 -5.200 -22.584 23.452 Atomic orbital electron populations 1.21629 0.92587 1.02562 1.02475 1.22303 0.96683 0.96538 0.97253 1.22889 1.01540 0.98141 0.93118 1.22900 0.96591 0.98613 0.97545 1.21074 0.88622 0.77619 0.81903 1.90671 1.42447 1.48562 1.64920 1.46117 1.22417 1.61642 1.06409 1.20012 0.88872 0.99585 0.86469 1.19636 1.01458 0.94918 0.94794 1.21144 0.98770 0.97905 0.92818 1.20684 0.99648 0.98014 0.94498 1.21198 0.97747 0.95822 0.96543 1.20568 1.00213 0.96330 0.94586 1.20493 0.98689 0.99551 0.90786 1.19806 0.97806 0.94284 0.83464 1.44273 1.69889 1.18514 1.02489 1.19403 1.32548 1.02015 0.83316 0.89163 1.25776 1.01170 0.97339 1.01533 1.70150 1.48624 1.14309 1.26985 0.84942 0.77278 0.78082 0.78179 1.20907 1.21895 1.19104 1.19279 0.95215 0.88027 0.87860 1.22906 1.01852 0.92319 0.98236 0.91892 0.91617 0.91995 0.89993 0.90487 0.90780 0.84986 0.75097 0.90335 0.90959 0.82842 0.85092 0.84280 0.94205 0.93885 0.93995 0.95663 0.95888 0.90533 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.59 71.98 0.69 -0.41 16 2 C -0.11 -1.17 4.55 -10.27 -0.05 -1.22 16 3 C -0.12 -1.73 7.00 31.12 0.22 -1.51 16 4 C -0.14 -1.88 3.80 -11.01 -0.04 -1.92 16 5 C 0.52 10.58 7.36 87.66 0.64 11.22 16 6 O -0.59 -16.81 15.90 -3.03 -0.05 -16.86 16 7 N -0.71 -12.64 5.55 -466.78 -2.59 -15.23 16 8 C 0.17 3.48 5.80 85.63 0.50 3.98 16 9 C -0.11 -2.51 5.25 -19.88 -0.10 -2.61 16 10 C -0.09 -2.11 9.70 22.25 0.22 -1.89 16 11 C -0.11 -3.44 10.05 22.30 0.22 -3.22 16 12 C -0.11 -4.50 6.22 -19.83 -0.12 -4.62 16 13 C -0.12 -4.29 6.22 -19.83 -0.12 -4.42 16 14 C -0.08 -2.12 9.70 22.30 0.22 -1.90 16 15 C 0.17 7.36 7.25 85.63 0.62 7.98 16 16 N -0.63 -33.49 3.41 -709.71 -2.42 -35.91 16 17 C -0.24 -13.89 10.32 84.03 0.87 -13.02 16 18 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 19 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 20 N -0.95 -57.40 10.44 21.65 0.23 -57.18 16 21 Si 0.99 45.40 29.55 68.60 2.03 47.43 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.22 11.43 5.39 85.63 0.46 11.89 16 26 C -0.12 -1.32 7.19 31.12 0.22 -1.10 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.47 7.34 -2.39 -0.02 0.45 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 32 H 0.07 1.40 7.43 -2.39 -0.02 1.38 16 33 H 0.13 1.33 7.65 -2.39 -0.02 1.31 16 34 H 0.41 5.90 8.46 -92.71 -0.78 5.11 16 35 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 36 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.03 1.45 7.49 -2.39 -0.02 1.44 16 44 H 0.02 1.34 7.49 -2.39 -0.02 1.32 16 45 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 46 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -71.42 374.39 2.29 -69.13 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.19 Total: 14.63 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 4.91 Total: -6.02 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.78 Total: -108.31 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.05 Total: -16.86 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.42 2.29 -69.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054261076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.529 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds