Wall clock time and date at job start Tue Mar 31 2020 11:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99514 * 2 1 4 4 H 1.48493 * 109.47400 * 269.99908 * 3 2 1 5 5 H 1.48505 * 109.46912 * 30.00578 * 3 2 1 6 6 H 1.48503 * 109.46661 * 150.00028 * 3 2 1 7 7 C 1.38812 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99655 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99828 * 359.97438 * 7 2 1 10 10 C 1.48911 * 125.82979 * 180.02562 * 9 7 2 11 11 C 1.53170 * 105.29946 * 188.16052 * 10 9 7 12 12 H 1.08994 * 112.07045 * 84.86836 * 11 10 9 13 13 C 1.56629 * 98.09792 * 326.27789 * 11 10 9 14 14 H 1.09003 * 101.82438 * 300.94040 * 13 11 10 15 15 C 1.48707 * 102.06233 * 48.44000 * 13 11 10 16 16 C 1.48980 * 108.10852 * 190.80944 * 13 11 10 17 17 H 1.09002 * 114.02415 * 210.66661 * 16 13 11 18 18 C 1.56637 * 103.25687 * 85.97386 * 16 13 11 19 19 C 1.55697 * 104.80346 * 325.13448 * 18 16 13 20 20 C 1.53144 * 117.84279 * 217.73863 * 11 10 9 21 21 H 1.09001 * 112.66297 * 313.34543 * 20 11 10 22 22 C 1.56888 * 103.43460 * 190.23766 * 20 11 10 23 23 N 1.48926 * 104.28607 * 320.72954 * 22 20 11 24 24 C 1.34777 * 122.79368 * 145.95266 * 23 22 20 25 25 O 1.21619 * 120.00047 * 179.97438 * 24 23 22 26 26 C 1.43205 * 120.00080 * 359.70378 * 24 23 22 27 27 C 9.06964 * 68.06050 * 201.85268 * 2 1 3 28 28 C 9.57793 * 93.27602 * 205.55169 * 7 1 2 29 29 C 1.52993 * 117.50020 * 84.07083 * 28 27 26 30 30 C 1.53000 * 117.49992 * 15.40557 * 28 27 26 31 31 H 0.96996 * 120.00803 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.28082 * 69.20154 * 10 9 7 33 33 H 1.09003 * 110.35395 * 307.15909 * 10 9 7 34 34 H 1.09000 * 110.97396 * 73.93026 * 15 13 11 35 35 H 1.09003 * 110.97385 * 197.70500 * 15 13 11 36 36 H 1.08997 * 110.21763 * 83.82885 * 18 16 13 37 37 H 1.09000 * 110.21598 * 205.81191 * 18 16 13 38 38 H 1.09002 * 109.27954 * 203.48761 * 19 18 16 39 39 H 1.09001 * 109.65782 * 83.47758 * 19 18 16 40 40 H 1.09004 * 111.41763 * 201.68859 * 22 20 11 41 41 H 1.08994 * 109.82488 * 78.98570 * 22 20 11 42 42 H 1.08998 * 115.54605 * 229.74138 * 28 27 26 43 43 H 1.09001 * 117.49911 * 359.97438 * 29 28 27 44 44 H 1.09000 * 117.49874 * 145.01632 * 29 28 27 45 45 H 1.08994 * 117.49821 * 214.97721 * 30 28 27 46 46 H 1.08996 * 117.49799 * 359.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9354 -3.7466 -0.0005 11 6 0.7667 -4.7141 -0.2103 12 1 0.5273 -4.8445 -1.2655 13 6 -0.3299 -3.9065 0.5634 14 1 0.1050 -3.8381 1.5606 15 6 -0.1654 -2.5404 -0.0004 16 6 -1.5227 -4.7841 0.7262 17 1 -2.4702 -4.2455 0.7482 18 6 -1.2038 -5.5848 2.0341 19 6 0.3379 -5.8002 2.0028 20 6 0.7918 -6.0420 0.5524 21 1 1.7588 -6.5415 0.4942 22 6 -0.3782 -6.8589 -0.0997 23 7 -1.4520 -5.8509 -0.3201 24 6 -2.2938 -5.8991 -1.3716 25 8 -3.1536 -5.0488 -1.5018 26 6 -2.1722 -6.9483 -2.3386 27 6 -2.0725 -7.8083 -3.1314 28 6 -1.9475 -8.8854 -4.1284 29 6 -2.1321 -8.5107 -5.6002 30 6 -3.2153 -9.3105 -4.8720 31 1 -0.4851 0.8399 0.0004 32 1 2.4214 -3.9426 0.9553 33 1 2.6539 -3.8397 -0.8150 34 1 -0.5632 -2.4860 -1.0138 35 1 -0.6338 -1.7943 0.6416 36 1 -1.4869 -5.0023 2.9108 37 1 -1.7292 -6.5398 2.0287 38 1 0.5927 -6.6668 2.6128 39 1 0.8396 -4.9170 2.3982 40 1 -0.7301 -7.6489 0.5638 41 1 -0.0508 -7.2784 -1.0509 42 1 -1.2177 -9.6604 -3.8941 43 1 -2.3465 -7.4671 -5.8308 44 1 -1.5240 -9.0394 -6.3343 45 1 -3.3193 -10.3650 -5.1273 46 1 -4.1419 -8.7934 -4.6231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089806096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:52 Heat of formation + Delta-G solvation = 105.410826 kcal Electronic energy + Delta-G solvation = -26738.314796 eV Core-core repulsion = 23210.996173 eV Total energy + Delta-G solvation = -3527.318623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.82244 -40.00032 -38.48577 -37.58280 -34.72149 -33.97079 -33.15937 -32.57173 -30.71983 -28.51089 -27.44938 -26.38980 -25.12235 -23.61765 -23.31320 -22.48286 -22.34725 -21.55296 -19.34849 -18.87739 -18.48746 -17.91208 -17.45294 -17.02877 -16.78405 -16.11732 -15.86275 -15.61622 -15.17441 -15.09041 -14.50454 -14.28827 -14.24857 -13.78658 -13.52010 -13.25521 -13.19112 -13.03729 -12.95793 -12.77756 -12.60531 -12.49232 -12.44873 -12.28834 -12.16751 -12.04047 -11.87970 -11.77610 -11.61242 -11.42378 -11.04210 -10.86866 -10.78706 -10.75808 -10.53969 -9.72442 -8.95769 -7.80735 -5.24730 0.40484 1.15462 1.42330 1.45587 1.54339 1.78747 2.26653 2.45969 2.89339 3.08215 3.29655 3.33866 3.39632 3.50053 3.66734 3.82086 3.93608 4.01340 4.02459 4.14214 4.20543 4.31852 4.32626 4.39736 4.46368 4.58396 4.65194 4.71285 4.75460 4.84000 4.86794 4.93931 4.95886 5.00176 5.05402 5.09039 5.19704 5.20171 5.23943 5.33293 5.37175 5.41984 5.52425 5.64724 5.76846 6.13030 6.16821 6.31195 6.92775 7.00770 7.69184 8.38148 9.23874 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.003598 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.425215 B = 7779.809912 C = 8498.693141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.073 4.073 3 Si 0.983 3.017 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.633 5.633 10 C 0.140 3.860 11 C -0.088 4.088 12 H 0.051 0.949 13 C -0.152 4.152 14 H 0.087 0.913 15 C 0.193 3.807 16 C 0.165 3.835 17 H 0.087 0.913 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.074 4.074 21 H 0.129 0.871 22 C 0.114 3.886 23 N -0.597 5.597 24 C 0.624 3.376 25 O -0.585 6.585 26 C -0.259 4.259 27 C -0.030 4.030 28 C -0.079 4.079 29 C -0.159 4.159 30 C -0.150 4.150 31 H 0.245 0.755 32 H 0.044 0.956 33 H 0.025 0.975 34 H -0.041 1.041 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.168 0.832 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -26.154 -1.435 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.265 4.265 3 Si 0.811 3.189 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.360 5.360 10 C 0.016 3.984 11 C -0.108 4.108 12 H 0.070 0.930 13 C -0.172 4.172 14 H 0.104 0.896 15 C 0.069 3.931 16 C 0.063 3.937 17 H 0.105 0.895 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.093 4.093 21 H 0.147 0.853 22 C -0.006 4.006 23 N -0.329 5.329 24 C 0.414 3.586 25 O -0.468 6.468 26 C -0.262 4.262 27 C -0.032 4.032 28 C -0.096 4.096 29 C -0.196 4.196 30 C -0.186 4.186 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.043 0.957 34 H -0.023 1.023 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.186 0.814 43 H 0.099 0.901 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.105 -25.497 -1.448 25.562 hybrid contribution 0.027 2.129 -0.487 2.184 sum -1.078 -23.367 -1.934 23.472 Atomic orbital electron populations 1.70148 1.06504 1.24993 1.58639 1.25717 0.96585 1.01261 1.02945 0.85008 0.77737 0.78845 0.77311 1.21719 1.21987 1.18803 1.19511 0.91029 0.83759 1.42399 0.89735 1.45970 1.01657 1.01104 1.87268 1.21435 0.94391 0.84261 0.98331 1.22441 0.95146 0.95355 0.97851 0.93028 1.21946 0.96989 0.95396 1.02866 0.89558 1.20174 0.84181 0.93737 0.95044 1.21592 0.97269 0.87517 0.87301 0.89532 1.23307 0.97009 1.00561 0.94483 1.22344 0.94325 1.02947 0.95698 1.22437 0.99201 0.93175 0.94497 0.85291 1.23222 0.85389 0.89912 1.02087 1.49619 1.32026 1.28332 1.22949 1.15036 0.81214 0.82114 0.80223 1.90819 1.37834 1.41461 1.76660 1.20500 1.06335 0.98517 1.00821 1.22186 0.94444 0.93093 0.93518 1.19381 1.05155 0.95896 0.89194 1.23238 1.02803 1.01607 0.91974 1.23241 0.91806 1.02992 1.00585 0.94540 0.93814 0.95701 1.02251 0.91748 0.89518 0.88524 0.87630 0.92246 0.86977 0.89778 0.81431 0.90061 0.84529 0.84258 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.04 10.16 21.65 0.22 -60.82 16 2 C -0.07 -4.37 5.49 84.86 0.47 -3.90 16 3 Si 0.98 47.82 29.55 68.60 2.03 49.84 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.24 -14.00 10.31 84.03 0.87 -13.13 16 8 H 0.08 4.69 7.83 -2.91 -0.02 4.67 16 9 N -0.63 -34.62 3.47 -694.25 -2.41 -37.03 16 10 C 0.14 5.85 6.71 85.97 0.58 6.43 16 11 C -0.09 -3.12 2.65 -9.42 -0.02 -3.14 16 12 H 0.05 2.08 7.60 -2.39 -0.02 2.06 16 13 C -0.15 -6.14 2.53 -12.16 -0.03 -6.17 16 14 H 0.09 3.37 4.27 -2.39 -0.01 3.36 16 15 C 0.19 10.62 5.68 84.36 0.48 11.09 16 16 C 0.17 5.60 4.28 44.38 0.19 5.79 16 17 H 0.09 3.37 7.70 -2.39 -0.02 3.35 16 18 C -0.12 -2.59 5.70 32.80 0.19 -2.40 16 19 C -0.12 -2.33 5.35 31.82 0.17 -2.16 16 20 C -0.07 -1.64 3.93 -9.08 -0.04 -1.67 16 21 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 22 C 0.11 2.38 5.43 87.27 0.47 2.85 16 23 N -0.60 -18.68 2.12 -785.27 -1.67 -20.35 16 24 C 0.62 23.54 7.63 85.49 0.65 24.19 16 25 O -0.59 -27.85 16.99 -4.09 -0.07 -27.92 16 26 C -0.26 -8.07 12.04 30.02 0.36 -7.70 16 27 C -0.03 -0.72 13.48 31.16 0.42 -0.30 16 28 C -0.08 -1.09 6.22 -12.57 -0.08 -1.17 16 29 C -0.16 -1.93 10.21 30.62 0.31 -1.62 16 30 C -0.15 -1.62 10.21 30.62 0.31 -1.31 16 31 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.04 1.68 7.91 -2.39 -0.02 1.66 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H -0.04 -2.58 8.14 -2.39 -0.02 -2.60 16 35 H 0.06 3.98 6.11 -2.39 -0.01 3.96 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.72 7.26 -2.39 -0.02 1.70 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.49 6.22 -2.39 -0.01 1.47 16 40 H 0.11 1.59 7.30 -2.38 -0.02 1.57 16 41 H 0.08 1.65 7.18 -2.39 -0.02 1.64 16 42 H 0.17 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -84.21 360.58 4.38 -79.83 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.99 Total: 10.78 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.30 Total: 5.68 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -3.86 Total: -118.21 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.07 Total: -27.92 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.84 kcal Total: -84.21 4.38 -79.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089806096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.237 kcal (2) G-P(sol) polarization free energy of solvation -84.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds