Wall clock time and date at job start Tue Mar 31 2020 11:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99959 * 2 1 4 4 H 1.48500 * 109.47176 * 275.27845 * 3 2 1 5 5 H 1.48502 * 109.47330 * 35.28067 * 3 2 1 6 6 H 1.48502 * 109.47296 * 155.27670 * 3 2 1 7 7 C 1.38811 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 335.15690 * 7 2 1 9 9 N 1.36941 * 120.00319 * 155.15642 * 7 2 1 10 10 C 1.44461 * 118.50992 * 324.67084 * 9 7 2 11 11 C 1.54877 * 109.32357 * 268.92865 * 10 9 7 12 12 C 1.47684 * 109.68150 * 290.10308 * 11 10 9 13 13 O 1.42489 * 113.65706 * 60.81709 * 12 11 10 14 14 C 1.40517 * 113.54792 * 272.22251 * 13 12 11 15 15 H 1.09002 * 109.34033 * 335.22236 * 14 13 12 16 16 C 1.53008 * 109.40595 * 215.42979 * 14 13 12 17 17 N 1.46496 * 109.47233 * 64.59607 * 16 14 13 18 18 C 1.34776 * 120.00329 * 180.02562 * 17 16 14 19 19 O 1.21276 * 119.99668 * 354.69921 * 18 17 16 20 20 C 1.50695 * 120.00242 * 174.70041 * 18 17 16 21 21 C 1.52998 * 115.54976 * 297.13010 * 20 18 17 22 22 C 1.53001 * 109.47383 * 294.64581 * 21 20 18 23 23 F 1.39901 * 109.47053 * 177.80533 * 22 21 20 24 24 C 1.53002 * 117.50050 * 151.46227 * 20 18 17 25 25 C 1.52993 * 117.50262 * 82.80102 * 20 18 17 26 26 C 1.48180 * 118.51489 * 144.68673 * 9 7 2 27 27 H 0.96992 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.49566 * 28.88821 * 10 9 7 29 29 H 1.09003 * 109.48945 * 148.97545 * 10 9 7 30 30 H 1.08993 * 109.43688 * 50.17018 * 11 10 9 31 31 H 1.09001 * 109.43411 * 170.03969 * 11 10 9 32 32 H 1.09000 * 108.64316 * 181.88406 * 12 11 10 33 33 H 1.09000 * 108.64797 * 299.72485 * 12 11 10 34 34 H 1.08996 * 109.46803 * 304.59653 * 16 14 13 35 35 H 1.08994 * 109.46969 * 184.59726 * 16 14 13 36 36 H 0.97008 * 120.00047 * 359.72346 * 17 16 14 37 37 H 1.09005 * 109.47247 * 54.64548 * 21 20 18 38 38 H 1.09001 * 109.47245 * 174.64585 * 21 20 18 39 39 H 1.08994 * 109.46964 * 297.80964 * 22 21 20 40 40 H 1.09001 * 109.46770 * 57.80946 * 22 21 20 41 41 H 1.09001 * 117.49713 * 0.02562 * 24 20 18 42 42 H 1.08998 * 117.49788 * 145.01927 * 24 20 18 43 43 H 1.08998 * 117.50374 * 214.97778 * 25 20 18 44 44 H 1.09000 * 117.50044 * 0.02562 * 25 20 18 45 45 H 1.09005 * 109.23272 * 18.46167 * 26 9 7 46 46 H 1.09004 * 109.19989 * 259.06969 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6179 0.8087 6 1 3.5990 1.4106 0.5856 7 6 2.0103 -1.2021 0.0005 8 1 1.5452 -2.0940 0.3939 9 7 3.2846 -1.2573 -0.4977 10 6 3.6178 -0.4280 -1.6327 11 6 3.3615 -1.2198 -2.9388 12 6 4.3605 -2.2996 -3.0699 13 8 4.3219 -3.2466 -2.0060 14 6 5.1193 -2.8880 -0.9060 15 1 5.9169 -2.2242 -1.2395 16 6 5.7309 -4.1476 -0.2893 17 7 6.6416 -4.7704 -1.2530 18 6 7.2985 -5.9010 -0.9261 19 8 7.2110 -6.3499 0.1971 20 6 8.1417 -6.6072 -1.9562 21 6 7.3855 -7.1422 -3.1738 22 6 6.4235 -8.2468 -2.7319 23 9 5.6961 -8.7015 -3.8370 24 6 9.3373 -7.4194 -1.4542 25 6 9.5645 -6.0906 -2.1793 26 6 4.2593 -2.1651 0.1516 27 1 -0.4850 0.8400 -0.0004 28 1 2.9974 0.4682 -1.6229 29 1 4.6688 -0.1440 -1.5796 30 1 2.3615 -1.6524 -2.9104 31 1 3.4407 -0.5467 -3.7925 32 1 4.1857 -2.8238 -4.0095 33 1 5.3542 -1.8528 -3.1032 34 1 4.9369 -4.8493 -0.0338 35 1 6.2829 -3.8798 0.6116 36 1 6.7686 -4.3716 -2.1281 37 1 6.8209 -6.3322 -3.6357 38 1 8.0964 -7.5465 -3.8944 39 1 6.9912 -9.0738 -2.3053 40 1 5.7372 -7.8525 -1.9825 41 1 9.5136 -7.4433 -0.3788 42 1 9.5852 -8.3347 -1.9917 43 1 9.9619 -6.1323 -3.1934 44 1 9.8908 -5.2402 -1.5807 45 1 3.7213 -2.9053 0.7438 46 1 4.9088 -1.5845 0.8067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150030047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:35 Heat of formation + Delta-G solvation = -81.932742 kcal Electronic energy + Delta-G solvation = -27373.141045 eV Core-core repulsion = 23406.929370 eV Total energy + Delta-G solvation = -3966.211675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.79089 -40.43253 -39.13632 -37.19637 -35.50183 -34.79869 -32.49423 -31.71182 -31.52540 -29.19054 -26.41679 -25.54415 -24.35151 -23.24032 -22.74231 -22.00484 -21.26951 -20.31515 -19.42544 -17.45317 -16.68345 -16.60319 -16.47044 -16.22293 -16.16516 -15.72056 -15.30949 -14.99822 -14.83508 -14.58839 -14.39292 -13.84660 -13.53907 -13.27329 -13.07822 -12.84721 -12.65366 -12.56639 -12.36943 -12.06901 -11.94989 -11.86514 -11.76485 -11.15069 -11.10029 -11.00394 -10.87226 -10.53467 -10.43370 -10.38806 -10.16228 -9.97252 -9.82300 -9.60135 -9.14039 -9.02969 -8.51873 -6.88935 -6.00936 -3.37864 2.38199 2.94034 3.26533 3.26837 3.44169 3.48046 4.01590 4.02948 4.31107 4.37917 4.46693 4.49306 4.64553 4.74602 4.77931 4.89729 5.06411 5.17844 5.20733 5.21711 5.28963 5.39447 5.42365 5.46010 5.49008 5.54535 5.68507 5.70216 5.72394 5.73729 5.81883 5.96094 6.05507 6.19591 6.32919 6.35330 6.48876 6.59227 6.67467 6.98266 7.37939 7.71548 8.05301 8.07996 8.35050 8.99778 9.70674 10.03909 11.14809 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.003169 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.924928 B = 8834.706493 C = 9177.762141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.035 3.965 3 Si 0.875 3.125 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.269 4.269 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.144 3.856 11 C -0.180 4.180 12 C 0.079 3.921 13 O -0.356 6.356 14 C 0.065 3.935 15 H 0.055 0.945 16 C 0.122 3.878 17 N -0.715 5.715 18 C 0.547 3.453 19 O -0.537 6.537 20 C -0.162 4.162 21 C -0.107 4.107 22 C 0.062 3.938 23 F -0.217 7.217 24 C -0.144 4.144 25 C -0.153 4.153 26 C 0.132 3.868 27 H 0.263 0.737 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.858 -11.224 -8.057 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.166 4.166 3 Si 0.705 3.295 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.398 4.398 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.018 3.982 11 C -0.220 4.220 12 C 0.003 3.997 13 O -0.274 6.274 14 C 0.005 3.995 15 H 0.073 0.927 16 C -0.002 4.002 17 N -0.366 5.366 18 C 0.332 3.668 19 O -0.413 6.413 20 C -0.166 4.166 21 C -0.145 4.145 22 C 0.008 3.992 23 F -0.199 7.199 24 C -0.181 4.181 25 C -0.191 4.191 26 C 0.006 3.994 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.236 0.764 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 19.488 -11.634 -7.234 23.822 hybrid contribution 0.422 1.579 -0.551 1.725 sum 19.910 -10.055 -7.785 23.625 Atomic orbital electron populations 1.69902 1.05954 1.26662 1.51256 1.25379 0.95032 0.97538 0.98606 0.87007 0.80700 0.85034 0.76718 1.21509 1.22932 1.19684 1.18842 0.87877 0.94709 1.38328 0.90357 1.43808 1.09622 1.47585 1.30922 1.21107 0.97000 0.93792 0.86328 1.22167 1.01912 0.98250 0.99692 1.21356 0.97756 0.91181 0.89450 1.87449 1.68984 1.44630 1.26297 1.22788 0.92948 0.94063 0.89706 0.92698 1.21610 0.92364 0.94597 0.91621 1.45881 1.45197 1.26395 1.19109 1.19416 0.79430 0.80346 0.87644 1.90718 1.63281 1.65902 1.21437 1.21355 0.90601 1.06107 0.98494 1.21632 0.98632 0.98958 0.95277 1.21933 0.93943 0.97479 0.85894 1.92774 1.79806 1.90671 1.56598 1.23048 0.97798 0.95290 1.01944 1.23108 0.94568 0.98665 1.02716 1.21837 0.91808 0.93088 0.92718 0.92722 0.92409 0.95122 0.89976 0.92131 0.90999 0.94743 0.90240 0.90060 0.76442 0.89667 0.89674 0.90469 0.90602 0.87477 0.87768 0.87614 0.88089 0.91355 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.97 55.49 0.78 -26.44 16 2 C 0.03 0.99 5.22 -17.43 -0.09 0.90 16 3 Si 0.87 21.88 25.11 -169.99 -4.27 17.61 16 4 H -0.29 -6.91 6.65 56.52 0.38 -6.54 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.27 -7.46 9.73 -15.06 -0.15 -7.61 16 8 H 0.08 2.37 8.05 -52.49 -0.42 1.95 16 9 N -0.60 -13.85 2.21 -171.48 -0.38 -14.23 16 10 C 0.14 3.04 4.48 -4.14 -0.02 3.03 16 11 C -0.18 -3.28 6.03 -28.31 -0.17 -3.45 16 12 C 0.08 1.19 6.04 34.59 0.21 1.40 16 13 O -0.36 -5.98 9.76 -34.08 -0.33 -6.31 16 14 C 0.07 0.99 2.35 -26.05 -0.06 0.93 16 15 H 0.06 0.75 7.20 -51.93 -0.37 0.38 16 16 C 0.12 1.64 5.24 -4.04 -0.02 1.62 16 17 N -0.72 -8.16 5.49 -60.30 -0.33 -8.49 16 18 C 0.55 6.54 6.45 -10.99 -0.07 6.47 16 19 O -0.54 -8.43 16.64 5.56 0.09 -8.34 16 20 C -0.16 -1.37 1.90 -155.67 -0.30 -1.66 16 21 C -0.11 -0.82 5.54 -26.73 -0.15 -0.97 16 22 C 0.06 0.59 7.45 37.16 0.28 0.86 16 23 F -0.22 -2.54 17.36 2.25 0.04 -2.50 16 24 C -0.14 -1.04 9.77 -26.69 -0.26 -1.30 16 25 C -0.15 -0.98 9.92 -26.70 -0.26 -1.24 16 26 C 0.13 2.51 6.12 -2.44 -0.01 2.50 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.06 1.36 3.01 -51.93 -0.16 1.20 16 29 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.44 7.27 -51.93 -0.38 0.06 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.40 3.85 8.46 -40.82 -0.35 3.50 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.82 7.65 -51.93 -0.40 0.42 16 41 H 0.11 0.92 7.95 -51.93 -0.41 0.50 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.35 7.75 -51.93 -0.40 0.94 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -33.02 369.05 -7.46 -40.48 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.54 Total: 1.17 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.08 Total: 1.48 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.06 Total: -49.16 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.24 Total: -14.65 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.27 Total: 17.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.02 -7.46 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150030047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.448 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds