Wall clock time and date at job start Tue Mar 31 2020 11:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99959 * 2 1 4 4 H 1.48500 * 109.47176 * 275.27845 * 3 2 1 5 5 H 1.48502 * 109.47330 * 35.28067 * 3 2 1 6 6 H 1.48502 * 109.47296 * 155.27670 * 3 2 1 7 7 C 1.38811 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00021 * 335.15690 * 7 2 1 9 9 N 1.36941 * 120.00319 * 155.15642 * 7 2 1 10 10 C 1.44461 * 118.50992 * 324.67084 * 9 7 2 11 11 C 1.54877 * 109.32357 * 268.92865 * 10 9 7 12 12 C 1.47684 * 109.68150 * 290.10308 * 11 10 9 13 13 O 1.42489 * 113.65706 * 60.81709 * 12 11 10 14 14 C 1.40517 * 113.54792 * 272.22251 * 13 12 11 15 15 H 1.09002 * 109.34033 * 335.22236 * 14 13 12 16 16 C 1.53008 * 109.40595 * 215.42979 * 14 13 12 17 17 N 1.46496 * 109.47233 * 64.59607 * 16 14 13 18 18 C 1.34776 * 120.00329 * 180.02562 * 17 16 14 19 19 O 1.21276 * 119.99668 * 354.69921 * 18 17 16 20 20 C 1.50695 * 120.00242 * 174.70041 * 18 17 16 21 21 C 1.52998 * 115.54976 * 297.13010 * 20 18 17 22 22 C 1.53001 * 109.47383 * 294.64581 * 21 20 18 23 23 F 1.39901 * 109.47053 * 177.80533 * 22 21 20 24 24 C 1.53002 * 117.50050 * 151.46227 * 20 18 17 25 25 C 1.52993 * 117.50262 * 82.80102 * 20 18 17 26 26 C 1.48180 * 118.51489 * 144.68673 * 9 7 2 27 27 H 0.96992 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.49566 * 28.88821 * 10 9 7 29 29 H 1.09003 * 109.48945 * 148.97545 * 10 9 7 30 30 H 1.08993 * 109.43688 * 50.17018 * 11 10 9 31 31 H 1.09001 * 109.43411 * 170.03969 * 11 10 9 32 32 H 1.09000 * 108.64316 * 181.88406 * 12 11 10 33 33 H 1.09000 * 108.64797 * 299.72485 * 12 11 10 34 34 H 1.08996 * 109.46803 * 304.59653 * 16 14 13 35 35 H 1.08994 * 109.46969 * 184.59726 * 16 14 13 36 36 H 0.97008 * 120.00047 * 359.72346 * 17 16 14 37 37 H 1.09005 * 109.47247 * 54.64548 * 21 20 18 38 38 H 1.09001 * 109.47245 * 174.64585 * 21 20 18 39 39 H 1.08994 * 109.46964 * 297.80964 * 22 21 20 40 40 H 1.09001 * 109.46770 * 57.80946 * 22 21 20 41 41 H 1.09001 * 117.49713 * 0.02562 * 24 20 18 42 42 H 1.08998 * 117.49788 * 145.01927 * 24 20 18 43 43 H 1.08998 * 117.50374 * 214.97778 * 25 20 18 44 44 H 1.09000 * 117.50044 * 0.02562 * 25 20 18 45 45 H 1.09005 * 109.23272 * 18.46167 * 26 9 7 46 46 H 1.09004 * 109.19989 * 259.06969 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6179 0.8087 6 1 3.5990 1.4106 0.5856 7 6 2.0103 -1.2021 0.0005 8 1 1.5452 -2.0940 0.3939 9 7 3.2846 -1.2573 -0.4977 10 6 3.6178 -0.4280 -1.6327 11 6 3.3615 -1.2198 -2.9388 12 6 4.3605 -2.2996 -3.0699 13 8 4.3219 -3.2466 -2.0060 14 6 5.1193 -2.8880 -0.9060 15 1 5.9169 -2.2242 -1.2395 16 6 5.7309 -4.1476 -0.2893 17 7 6.6416 -4.7704 -1.2530 18 6 7.2985 -5.9010 -0.9261 19 8 7.2110 -6.3499 0.1971 20 6 8.1417 -6.6072 -1.9562 21 6 7.3855 -7.1422 -3.1738 22 6 6.4235 -8.2468 -2.7319 23 9 5.6961 -8.7015 -3.8370 24 6 9.3373 -7.4194 -1.4542 25 6 9.5645 -6.0906 -2.1793 26 6 4.2593 -2.1651 0.1516 27 1 -0.4850 0.8400 -0.0004 28 1 2.9974 0.4682 -1.6229 29 1 4.6688 -0.1440 -1.5796 30 1 2.3615 -1.6524 -2.9104 31 1 3.4407 -0.5467 -3.7925 32 1 4.1857 -2.8238 -4.0095 33 1 5.3542 -1.8528 -3.1032 34 1 4.9369 -4.8493 -0.0338 35 1 6.2829 -3.8798 0.6116 36 1 6.7686 -4.3716 -2.1281 37 1 6.8209 -6.3322 -3.6357 38 1 8.0964 -7.5465 -3.8944 39 1 6.9912 -9.0738 -2.3053 40 1 5.7372 -7.8525 -1.9825 41 1 9.5136 -7.4433 -0.3788 42 1 9.5852 -8.3347 -1.9917 43 1 9.9619 -6.1323 -3.1934 44 1 9.8908 -5.2402 -1.5807 45 1 3.7213 -2.9053 0.7438 46 1 4.9088 -1.5845 0.8067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150030047.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:34 Heat of formation + Delta-G solvation = -105.071338 kcal Electronic energy + Delta-G solvation = -27374.144410 eV Core-core repulsion = 23406.929370 eV Total energy + Delta-G solvation = -3967.215039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.62366 -41.34516 -40.42336 -37.97337 -37.12568 -35.98419 -33.86555 -33.69463 -32.17378 -30.62811 -27.80187 -27.13212 -25.37789 -24.31149 -23.45627 -22.99374 -22.58599 -21.84944 -20.40256 -18.69741 -18.23943 -17.84394 -17.60481 -17.36144 -17.07949 -16.89547 -16.28703 -16.13696 -15.91922 -15.78095 -15.35940 -15.22854 -15.06409 -14.66706 -14.24301 -14.18175 -13.90016 -13.72564 -13.62108 -13.39955 -13.27792 -12.80856 -12.68146 -12.59001 -12.39819 -12.27944 -11.92147 -11.82367 -11.81606 -11.53640 -11.47982 -11.37039 -11.05787 -10.84376 -10.60494 -10.39237 -10.15684 -8.79833 -8.21053 -5.54445 1.27855 1.40458 1.49434 1.51249 2.05550 2.40238 2.65873 2.83576 3.02273 3.29428 3.41392 3.66350 3.74670 3.78879 3.96306 3.98469 4.01733 4.07871 4.13638 4.15056 4.20593 4.31179 4.48849 4.49955 4.55028 4.58887 4.72141 4.73769 4.76659 4.84334 4.94473 4.97778 4.99161 5.01495 5.07753 5.08740 5.14817 5.23997 5.36063 5.45611 5.93827 6.13211 6.49266 6.51005 7.00921 7.18174 7.65896 7.97545 8.99472 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.003169 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.924928 B = 8834.706493 C = 9177.762141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.024 4.024 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.310 1.310 6 H -0.259 1.259 7 C -0.261 4.261 8 H 0.030 0.970 9 N -0.608 5.608 10 C 0.133 3.867 11 C -0.173 4.173 12 C 0.073 3.927 13 O -0.377 6.377 14 C 0.080 3.920 15 H 0.087 0.913 16 C 0.131 3.869 17 N -0.706 5.706 18 C 0.543 3.457 19 O -0.582 6.582 20 C -0.172 4.172 21 C -0.098 4.098 22 C 0.057 3.943 23 F -0.231 7.231 24 C -0.147 4.147 25 C -0.130 4.130 26 C 0.123 3.877 27 H 0.263 0.737 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.414 0.586 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.032 -10.573 -10.474 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.220 4.220 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.239 1.239 6 H -0.183 1.183 7 C -0.392 4.392 8 H 0.048 0.952 9 N -0.332 5.332 10 C 0.007 3.993 11 C -0.213 4.213 12 C -0.003 4.003 13 O -0.295 6.295 14 C 0.020 3.980 15 H 0.105 0.895 16 C 0.006 3.994 17 N -0.357 5.357 18 C 0.331 3.669 19 O -0.462 6.462 20 C -0.175 4.175 21 C -0.135 4.135 22 C 0.002 3.998 23 F -0.212 7.212 24 C -0.184 4.184 25 C -0.167 4.167 26 C -0.002 4.002 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.251 0.749 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.152 0.848 44 H 0.117 0.883 45 H 0.064 0.936 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.715 -10.984 -9.698 27.877 hybrid contribution -0.920 1.263 0.231 1.580 sum 22.796 -9.721 -9.466 26.528 Atomic orbital electron populations 1.70045 1.07886 1.27474 1.53983 1.26030 0.95626 1.01263 0.99060 0.85803 0.79264 0.79764 0.77378 1.19618 1.23937 1.18317 1.18688 0.89904 0.93137 1.37425 0.95214 1.43904 1.08580 1.48659 1.32064 1.21284 0.98405 0.92896 0.86668 1.22100 1.00407 0.99430 0.99344 1.21516 0.98612 0.90463 0.89689 1.87462 1.69597 1.45422 1.27024 1.22609 0.92510 0.94652 0.88207 0.89516 1.21325 0.92155 0.93559 0.92313 1.45749 1.44373 1.26344 1.19188 1.20079 0.79102 0.79970 0.87795 1.90697 1.64849 1.66949 1.23669 1.21240 0.91004 1.07286 0.97982 1.21592 0.98562 0.98181 0.95203 1.22066 0.93863 0.98806 0.85041 1.92744 1.80339 1.90920 1.57233 1.23140 0.96867 0.96967 1.01407 1.23248 0.91724 0.97785 1.03962 1.22015 0.91562 0.92477 0.94147 0.92843 0.94892 0.91510 0.94627 0.89091 0.88709 0.90831 0.92877 0.89569 0.74941 0.89671 0.86979 0.88956 0.92944 0.89366 0.85545 0.84781 0.88258 0.93649 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.97 21.65 0.30 -59.93 16 2 C -0.02 -1.40 5.22 84.86 0.44 -0.95 16 3 Si 0.95 45.77 25.11 68.60 1.72 47.49 16 4 H -0.27 -12.09 6.65 99.48 0.66 -11.43 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.26 -15.12 9.73 84.03 0.82 -14.30 16 8 H 0.03 1.96 8.05 -2.91 -0.02 1.94 16 9 N -0.61 -28.12 2.21 -696.45 -1.54 -29.66 16 10 C 0.13 5.29 4.48 87.40 0.39 5.68 16 11 C -0.17 -5.90 6.03 29.57 0.18 -5.72 16 12 C 0.07 1.93 6.04 70.32 0.42 2.36 16 13 O -0.38 -11.97 9.76 -144.86 -1.41 -13.38 16 14 C 0.08 2.26 2.35 31.03 0.07 2.34 16 15 H 0.09 1.95 7.20 -2.39 -0.02 1.93 16 16 C 0.13 3.43 5.24 86.38 0.45 3.89 16 17 N -0.71 -14.75 5.49 -463.08 -2.54 -17.29 16 18 C 0.54 12.37 6.45 87.66 0.57 12.94 16 19 O -0.58 -18.41 16.64 -3.02 -0.05 -18.46 16 20 C -0.17 -2.45 1.90 -52.93 -0.10 -2.55 16 21 C -0.10 -1.22 5.54 30.59 0.17 -1.05 16 22 C 0.06 1.00 7.45 71.98 0.54 1.54 16 23 F -0.23 -5.15 17.36 44.97 0.78 -4.37 16 24 C -0.15 -1.74 9.77 30.62 0.30 -1.44 16 25 C -0.13 -1.14 9.92 30.62 0.30 -0.84 16 26 C 0.12 4.65 6.12 86.49 0.53 5.18 16 27 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 28 H 0.03 1.48 3.01 -2.39 -0.01 1.47 16 29 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.43 7.27 -2.39 -0.02 1.41 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.41 6.54 8.46 -92.70 -0.78 5.75 16 37 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.11 0.85 8.09 -2.39 -0.02 0.83 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.15 7.65 -2.39 -0.02 1.13 16 41 H 0.09 1.41 7.95 -2.39 -0.02 1.39 16 42 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.04 1.88 7.75 -2.38 -0.02 1.86 16 46 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -77.15 369.05 2.49 -74.66 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.15 Total: 13.86 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.08 Total: 7.07 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.78 Total: -106.88 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.46 Total: -31.84 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.37 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.72 Total: 47.49 kcal Total: -77.15 2.49 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150030047.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.412 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds