Wall clock time and date at job start Tue Mar 31 2020 11:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48500 * 109.46967 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47075 * 120.00178 * 3 2 1 7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99592 * 164.52218 * 7 2 1 9 9 N 1.36933 * 119.99689 * 344.52440 * 7 2 1 10 10 C 1.47003 * 121.37999 * 335.96526 * 9 7 2 11 11 C 1.50322 * 109.16871 * 222.97336 * 10 9 7 12 12 C 1.29459 * 123.64914 * 349.01979 * 11 10 9 13 13 C 1.50701 * 117.68972 * 180.86083 * 12 11 10 14 14 C 1.52999 * 109.47066 * 95.00477 * 13 12 11 15 15 N 1.46497 * 109.47048 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00280 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00389 * 179.97438 * 16 15 14 19 19 C 1.50287 * 109.46919 * 300.01779 * 18 16 15 20 20 C 1.32263 * 121.59096 * 303.36555 * 19 18 16 21 21 C 1.45209 * 123.04101 * 0.93918 * 20 19 18 22 22 C 1.32942 * 125.19582 * 319.61307 * 21 20 19 23 23 C 1.45196 * 125.19796 * 359.96920 * 22 21 20 24 24 C 1.32298 * 123.02457 * 40.43896 * 23 22 21 25 25 C 1.49968 * 124.61113 * 1.13942 * 12 11 10 26 26 C 1.47342 * 121.37322 * 155.99115 * 9 7 2 27 27 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.52193 * 103.06141 * 10 9 7 29 29 H 1.09002 * 109.52385 * 342.87737 * 10 9 7 30 30 H 1.08002 * 118.17659 * 169.00334 * 11 10 9 31 31 H 1.09004 * 109.46451 * 214.99891 * 13 12 11 32 32 H 1.08994 * 109.47303 * 334.99900 * 13 12 11 33 33 H 1.09004 * 109.47006 * 299.99073 * 14 13 12 34 34 H 1.08994 * 109.47531 * 59.99562 * 14 13 12 35 35 H 0.97005 * 120.00136 * 0.02562 * 15 14 13 36 36 H 1.09005 * 109.46145 * 60.00396 * 18 16 15 37 37 H 1.07990 * 119.20713 * 123.31532 * 19 18 16 38 38 H 1.08000 * 118.47562 * 180.93631 * 20 19 18 39 39 H 1.07995 * 117.40012 * 139.58546 * 21 20 19 40 40 H 1.08004 * 117.39927 * 179.97438 * 22 21 20 41 41 H 1.08004 * 118.48658 * 220.41271 * 23 22 21 42 42 H 1.08002 * 119.20098 * 178.99568 * 24 23 22 43 43 H 1.09001 * 109.31247 * 101.00873 * 25 12 11 44 44 H 1.08998 * 109.31177 * 220.43698 * 25 12 11 45 45 H 1.09004 * 109.78023 * 237.78645 * 26 9 7 46 46 H 1.09001 * 109.77812 * 358.59220 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0610 -1.2189 -0.2502 9 7 1.3629 -2.3666 0.3154 10 6 0.1444 -2.3661 1.1378 11 6 0.2246 -3.4841 2.1395 12 6 1.1204 -4.4180 2.1019 13 6 1.0638 -5.4857 3.1640 14 6 0.2871 -6.6923 2.6332 15 7 0.2326 -7.7305 3.6653 16 6 -0.4060 -8.8918 3.4202 17 8 -0.9351 -9.0775 2.3448 18 6 -0.4616 -9.9599 4.4817 19 6 0.9353 -10.3822 4.8410 20 6 1.7787 -10.8348 3.9283 21 6 1.4393 -10.9418 2.5205 22 6 0.2690 -11.3548 2.0436 23 6 -0.8647 -11.7682 2.8510 24 6 -1.2253 -11.1447 3.9607 25 6 2.2139 -4.5089 1.0797 26 6 1.8591 -3.6720 -0.1545 27 1 -0.4850 0.8400 0.0004 28 1 -0.7264 -2.5114 0.4987 29 1 0.0585 -1.4138 1.6611 30 1 -0.5056 -3.5095 2.9348 31 1 2.0767 -5.7920 3.4254 32 1 0.5634 -5.0921 4.0486 33 1 -0.7258 -6.3860 2.3717 34 1 0.7874 -7.0860 1.7485 35 1 0.6555 -7.5818 4.5256 36 1 -0.9612 -9.5665 5.3670 37 1 1.2585 -10.3137 5.8692 38 1 2.7655 -11.1388 4.2447 39 1 2.1977 -10.6634 1.8038 40 1 0.1525 -11.3852 0.9703 41 1 -1.4405 -12.6240 2.5305 42 1 -2.0897 -11.4954 4.5050 43 1 3.1442 -4.1420 1.5133 44 1 2.3438 -5.5495 0.7823 45 1 1.0848 -4.1737 -0.7350 46 1 2.7476 -3.5292 -0.7695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160258226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:14 Heat of formation + Delta-G solvation = 51.730928 kcal Electronic energy + Delta-G solvation = -25532.998018 eV Core-core repulsion = 22003.351660 eV Total energy + Delta-G solvation = -3529.646358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54967 -38.07814 -37.31754 -35.32465 -33.64567 -32.58190 -32.49437 -31.26356 -29.81078 -28.71836 -26.70994 -25.13513 -23.80425 -23.06522 -22.48524 -21.16692 -20.87191 -18.88690 -17.78153 -17.58559 -17.42729 -16.63817 -16.11983 -15.51091 -15.35625 -14.94755 -14.55956 -14.38074 -14.07921 -13.88605 -13.57384 -13.52079 -13.17561 -12.74398 -12.64365 -12.37687 -12.21761 -12.14192 -11.95336 -11.54112 -11.39083 -11.14641 -10.97607 -10.87616 -10.70802 -10.44716 -10.32159 -10.23693 -9.99485 -9.79114 -9.53917 -9.46083 -9.04634 -8.62908 -8.40341 -7.88986 -6.70097 -5.76290 -3.15092 1.03281 1.77158 2.59467 2.87869 3.01755 3.32599 3.40235 3.45574 3.46828 4.46934 4.51670 4.54172 4.68108 4.85077 4.86594 4.96284 5.15585 5.18692 5.26767 5.32329 5.40178 5.42217 5.59802 5.68343 5.68819 5.73873 5.84021 6.05611 6.09540 6.19288 6.20391 6.24574 6.29374 6.42136 6.45740 6.52028 6.56841 6.58434 6.64976 6.81730 6.93377 7.26517 7.35409 7.43261 7.49601 7.77067 7.91365 8.23344 8.41775 9.23124 9.86036 10.44921 11.34054 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.002359 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.474162 B =11866.719702 C =11973.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.197 3.803 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.091 4.091 14 C 0.127 3.873 15 N -0.727 5.727 16 C 0.520 3.480 17 O -0.528 6.528 18 C -0.048 4.048 19 C -0.151 4.151 20 C -0.103 4.103 21 C -0.151 4.151 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.091 4.091 26 C 0.143 3.857 27 H 0.254 0.746 28 H 0.038 0.962 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -22.845 12.034 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.072 3.928 11 C -0.167 4.167 12 C -0.143 4.143 13 C -0.129 4.129 14 C 0.004 3.996 15 N -0.379 5.379 16 C 0.306 3.694 17 O -0.404 6.404 18 C -0.070 4.070 19 C -0.169 4.169 20 C -0.121 4.121 21 C -0.169 4.169 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.147 4.147 25 C -0.130 4.130 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.345 -22.791 11.203 25.398 hybrid contribution 0.595 0.944 0.531 1.236 sum 0.940 -21.847 11.734 24.817 Atomic orbital electron populations 1.70013 1.05157 1.25551 1.54788 1.24992 0.95391 0.98256 1.01345 0.86324 0.78801 0.83327 0.78052 1.20941 1.21642 1.21135 1.19145 0.92177 0.84417 1.41762 0.91462 1.44129 1.29277 1.01151 1.57333 1.19695 0.88603 0.94739 0.89758 1.23117 0.96725 0.97410 0.99438 1.20235 0.99265 0.96559 0.98217 1.20901 0.99961 0.94197 0.97808 1.21384 1.00967 0.86673 0.90576 1.46035 1.56884 1.16558 1.18382 1.20376 0.78020 0.82391 0.88659 1.90708 1.45341 1.79176 1.25188 1.19231 0.95347 0.93886 0.98508 1.22891 0.92077 1.02395 0.99561 1.21139 0.99440 0.98630 0.92914 1.21026 0.98084 1.02733 0.95012 1.21068 0.92156 0.96115 0.99685 1.21032 0.96976 0.99382 0.94694 1.22690 0.98569 0.96926 0.96516 1.20787 0.96551 0.98958 0.96672 1.20988 0.97283 0.87230 0.92835 0.93593 0.94470 0.89185 0.89106 0.91560 0.91627 0.91492 0.91518 0.76896 0.87634 0.85993 0.86404 0.87003 0.86880 0.86512 0.86275 0.91949 0.92967 0.95829 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.62 11.08 55.49 0.61 -26.00 16 2 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.90 29.58 -169.99 -5.03 16.88 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.84 9.71 -15.06 -0.15 -6.99 16 8 H 0.07 1.83 7.88 -52.48 -0.41 1.41 16 9 N -0.60 -15.29 3.01 -173.56 -0.52 -15.81 16 10 C 0.20 4.81 5.23 -5.10 -0.03 4.79 16 11 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 12 C -0.14 -2.48 5.11 -100.99 -0.52 -3.00 16 13 C -0.09 -1.20 5.32 -27.88 -0.15 -1.35 16 14 C 0.13 1.69 5.66 -4.04 -0.02 1.66 16 15 N -0.73 -7.92 5.45 -60.30 -0.33 -8.25 16 16 C 0.52 6.31 5.49 -10.99 -0.06 6.25 16 17 O -0.53 -8.41 13.67 5.56 0.08 -8.34 16 18 C -0.05 -0.43 2.89 -94.48 -0.27 -0.70 16 19 C -0.15 -1.14 8.89 -36.44 -0.32 -1.46 16 20 C -0.10 -0.88 9.58 -38.74 -0.37 -1.25 16 21 C -0.15 -1.54 8.53 -38.65 -0.33 -1.87 16 22 C -0.07 -0.79 7.35 -38.65 -0.28 -1.07 16 23 C -0.10 -1.02 9.09 -38.75 -0.35 -1.38 16 24 C -0.13 -1.19 8.78 -36.44 -0.32 -1.51 16 25 C -0.09 -1.63 5.95 -28.09 -0.17 -1.79 16 26 C 0.14 3.08 6.59 -3.43 -0.02 3.05 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 30 H 0.09 1.58 7.73 -52.49 -0.41 1.18 16 31 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.40 3.25 8.36 -40.82 -0.34 2.91 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.52 370.54 -10.75 -43.28 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.36 Total: 2.66 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.79 Total: -9.99 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.24 Total: -50.07 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.52 -10.75 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160258226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.007 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds