Wall clock time and date at job start Tue Mar 31 2020 11:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99613 * 2 1 4 4 H 1.48500 * 109.46967 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47075 * 120.00178 * 3 2 1 7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99592 * 164.52218 * 7 2 1 9 9 N 1.36933 * 119.99689 * 344.52440 * 7 2 1 10 10 C 1.47003 * 121.37999 * 335.96526 * 9 7 2 11 11 C 1.50322 * 109.16871 * 222.97336 * 10 9 7 12 12 C 1.29459 * 123.64914 * 349.01979 * 11 10 9 13 13 C 1.50701 * 117.68972 * 180.86083 * 12 11 10 14 14 C 1.52999 * 109.47066 * 95.00477 * 13 12 11 15 15 N 1.46497 * 109.47048 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00280 * 179.97438 * 15 14 13 17 17 O 1.21277 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00389 * 179.97438 * 16 15 14 19 19 C 1.50287 * 109.46919 * 300.01779 * 18 16 15 20 20 C 1.32263 * 121.59096 * 303.36555 * 19 18 16 21 21 C 1.45209 * 123.04101 * 0.93918 * 20 19 18 22 22 C 1.32942 * 125.19582 * 319.61307 * 21 20 19 23 23 C 1.45196 * 125.19796 * 359.96920 * 22 21 20 24 24 C 1.32298 * 123.02457 * 40.43896 * 23 22 21 25 25 C 1.49968 * 124.61113 * 1.13942 * 12 11 10 26 26 C 1.47342 * 121.37322 * 155.99115 * 9 7 2 27 27 H 0.96998 * 120.00224 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.52193 * 103.06141 * 10 9 7 29 29 H 1.09002 * 109.52385 * 342.87737 * 10 9 7 30 30 H 1.08002 * 118.17659 * 169.00334 * 11 10 9 31 31 H 1.09004 * 109.46451 * 214.99891 * 13 12 11 32 32 H 1.08994 * 109.47303 * 334.99900 * 13 12 11 33 33 H 1.09004 * 109.47006 * 299.99073 * 14 13 12 34 34 H 1.08994 * 109.47531 * 59.99562 * 14 13 12 35 35 H 0.97005 * 120.00136 * 0.02562 * 15 14 13 36 36 H 1.09005 * 109.46145 * 60.00396 * 18 16 15 37 37 H 1.07990 * 119.20713 * 123.31532 * 19 18 16 38 38 H 1.08000 * 118.47562 * 180.93631 * 20 19 18 39 39 H 1.07995 * 117.40012 * 139.58546 * 21 20 19 40 40 H 1.08004 * 117.39927 * 179.97438 * 22 21 20 41 41 H 1.08004 * 118.48658 * 220.41271 * 23 22 21 42 42 H 1.08002 * 119.20098 * 178.99568 * 24 23 22 43 43 H 1.09001 * 109.31247 * 101.00873 * 25 12 11 44 44 H 1.08998 * 109.31177 * 220.43698 * 25 12 11 45 45 H 1.09004 * 109.78023 * 237.78645 * 26 9 7 46 46 H 1.09001 * 109.77812 * 358.59220 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0610 -1.2189 -0.2502 9 7 1.3629 -2.3666 0.3154 10 6 0.1444 -2.3661 1.1378 11 6 0.2246 -3.4841 2.1395 12 6 1.1204 -4.4180 2.1019 13 6 1.0638 -5.4857 3.1640 14 6 0.2871 -6.6923 2.6332 15 7 0.2326 -7.7305 3.6653 16 6 -0.4060 -8.8918 3.4202 17 8 -0.9351 -9.0775 2.3448 18 6 -0.4616 -9.9599 4.4817 19 6 0.9353 -10.3822 4.8410 20 6 1.7787 -10.8348 3.9283 21 6 1.4393 -10.9418 2.5205 22 6 0.2690 -11.3548 2.0436 23 6 -0.8647 -11.7682 2.8510 24 6 -1.2253 -11.1447 3.9607 25 6 2.2139 -4.5089 1.0797 26 6 1.8591 -3.6720 -0.1545 27 1 -0.4850 0.8400 0.0004 28 1 -0.7264 -2.5114 0.4987 29 1 0.0585 -1.4138 1.6611 30 1 -0.5056 -3.5095 2.9348 31 1 2.0767 -5.7920 3.4254 32 1 0.5634 -5.0921 4.0486 33 1 -0.7258 -6.3860 2.3717 34 1 0.7874 -7.0860 1.7485 35 1 0.6555 -7.5818 4.5256 36 1 -0.9612 -9.5665 5.3670 37 1 1.2585 -10.3137 5.8692 38 1 2.7655 -11.1388 4.2447 39 1 2.1977 -10.6634 1.8038 40 1 0.1525 -11.3852 0.9703 41 1 -1.4405 -12.6240 2.5305 42 1 -2.0897 -11.4954 4.5050 43 1 3.1442 -4.1420 1.5133 44 1 2.3438 -5.5495 0.7823 45 1 1.0848 -4.1737 -0.7350 46 1 2.7476 -3.5292 -0.7695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160258226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:13 Heat of formation + Delta-G solvation = 32.853980 kcal Electronic energy + Delta-G solvation = -25533.816584 eV Core-core repulsion = 22003.351660 eV Total energy + Delta-G solvation = -3530.464924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39589 -39.55796 -38.25976 -36.62410 -35.12926 -33.54786 -33.18410 -32.86589 -31.48730 -30.16567 -27.72082 -26.69647 -24.70065 -24.45776 -23.97821 -22.48970 -22.07862 -19.70923 -19.43527 -18.49783 -18.11733 -17.61431 -17.41066 -17.02905 -16.67441 -16.30257 -15.75343 -15.50086 -15.31302 -15.10885 -15.08666 -14.80334 -14.38286 -14.21493 -13.80910 -13.41439 -13.36887 -13.23648 -13.09688 -12.86564 -12.81628 -12.76550 -12.57754 -12.36162 -12.20764 -11.90252 -11.79241 -11.67858 -11.25533 -11.15427 -10.85551 -10.68273 -10.17444 -10.01707 -9.49248 -9.11989 -8.76192 -7.88525 -5.31121 0.35364 1.10139 1.42979 1.46211 1.49154 1.55924 1.72466 2.26119 2.42917 2.50732 3.27944 3.65534 3.79114 3.89485 3.96517 4.01626 4.10283 4.14297 4.19748 4.23701 4.29416 4.37331 4.54215 4.56600 4.58553 4.69158 4.79842 4.85035 4.90816 4.97946 5.02548 5.06851 5.11098 5.17134 5.22660 5.40570 5.49200 5.51032 5.56265 5.59832 5.68956 5.85330 5.87594 5.88303 5.94098 6.28153 6.32852 6.66079 7.12326 7.37213 7.82266 8.37483 9.19993 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.002359 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.474162 B =11866.719702 C =11973.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.207 3.793 11 C -0.175 4.175 12 C -0.120 4.120 13 C -0.077 4.077 14 C 0.137 3.863 15 N -0.715 5.715 16 C 0.515 3.485 17 O -0.573 6.573 18 C -0.050 4.050 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.155 4.155 22 C -0.093 4.093 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.086 4.086 26 C 0.136 3.864 27 H 0.250 0.750 28 H 0.001 0.999 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.016 0.984 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -24.214 14.977 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.251 4.251 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.082 3.918 11 C -0.194 4.194 12 C -0.121 4.121 13 C -0.115 4.115 14 C 0.013 3.987 15 N -0.367 5.367 16 C 0.302 3.698 17 O -0.452 6.452 18 C -0.071 4.071 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.173 4.173 22 C -0.112 4.112 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.125 4.125 26 C 0.010 3.990 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.155 0.845 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.160 0.840 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.034 0.966 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.981 -24.190 14.178 28.108 hybrid contribution 0.116 1.297 -0.473 1.385 sum 2.097 -22.893 13.705 26.764 Atomic orbital electron populations 1.70198 1.06681 1.25900 1.56094 1.25820 0.96197 1.01571 1.01559 0.85260 0.77441 0.78897 0.78371 1.20043 1.22014 1.20303 1.19516 0.92588 0.85596 1.41273 0.91087 1.44425 1.29457 1.02081 1.57977 1.19339 0.87200 0.95271 0.89952 1.22825 0.99468 0.97193 0.99949 1.20593 0.97100 0.96267 0.98165 1.20790 1.01683 0.92384 0.96594 1.21057 0.99484 0.87248 0.90881 1.45856 1.56639 1.15676 1.18551 1.21046 0.77021 0.82939 0.88790 1.90701 1.47188 1.80017 1.27269 1.19385 0.96750 0.92643 0.98291 1.23156 0.90725 1.00641 1.00906 1.21321 1.00878 0.99778 0.91934 1.21207 0.97578 1.02117 0.96446 1.21137 0.93254 0.97412 0.99354 1.21216 0.97168 1.00320 0.95364 1.23035 0.99002 0.96631 0.96350 1.20736 0.96850 0.99858 0.95041 1.21179 0.96976 0.86091 0.94721 0.94114 0.98162 0.92631 0.86882 0.89033 0.89755 0.93699 0.93060 0.74833 0.84468 0.82498 0.84474 0.87586 0.88349 0.85492 0.84047 0.91215 0.89892 0.96609 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 11.08 21.65 0.24 -57.05 16 2 C -0.06 -3.26 5.01 84.86 0.43 -2.83 16 3 Si 0.97 45.68 29.58 68.60 2.03 47.71 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.26 -14.72 9.71 84.03 0.82 -13.91 16 8 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 9 N -0.62 -32.35 3.01 -703.03 -2.11 -34.46 16 10 C 0.21 10.59 5.23 85.42 0.45 11.04 16 11 C -0.18 -6.85 9.47 27.10 0.26 -6.59 16 12 C -0.12 -3.97 5.11 -15.14 -0.08 -4.05 16 13 C -0.08 -1.75 5.32 29.85 0.16 -1.59 16 14 C 0.14 3.35 5.66 86.38 0.49 3.83 16 15 N -0.71 -13.39 5.45 -463.08 -2.53 -15.92 16 16 C 0.51 11.40 5.49 87.66 0.48 11.88 16 17 O -0.57 -18.03 13.67 -3.02 -0.04 -18.07 16 18 C -0.05 -0.71 2.89 -13.29 -0.04 -0.75 16 19 C -0.14 -1.50 8.89 24.50 0.22 -1.28 16 20 C -0.12 -1.73 9.58 23.01 0.22 -1.51 16 21 C -0.16 -3.08 8.53 22.89 0.20 -2.88 16 22 C -0.09 -2.06 7.35 22.89 0.17 -1.89 16 23 C -0.12 -2.36 9.09 22.99 0.21 -2.15 16 24 C -0.13 -2.14 8.78 24.49 0.21 -1.93 16 25 C -0.09 -2.92 5.95 29.72 0.18 -2.74 16 26 C 0.14 5.84 6.59 86.31 0.57 6.41 16 27 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 3.16 6.41 -2.39 -0.02 3.14 16 30 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 31 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16 32 H 0.08 1.70 7.78 -2.39 -0.02 1.68 16 33 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16 35 H 0.41 4.90 8.36 -92.70 -0.77 4.13 16 36 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.16 0.68 8.06 -2.92 -0.02 0.65 16 38 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.10 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 Total: -1.00 -74.44 370.54 2.70 -71.74 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.18 Total: 17.00 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 4.93 Total: -10.95 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.40 Total: -107.43 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.44 2.70 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160258226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.598 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds