Wall clock time and date at job start Tue Mar 31 2020 11:16:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86804 * 119.99613 * 2 1
4 4 H 1.48500 * 109.46967 * 239.99826 * 3 2 1
5 5 H 1.48500 * 109.47351 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47075 * 120.00178 * 3 2 1
7 7 C 1.38809 * 120.00143 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99592 * 164.52218 * 7 2 1
9 9 N 1.36933 * 119.99689 * 344.52440 * 7 2 1
10 10 C 1.47003 * 121.37999 * 335.96526 * 9 7 2
11 11 C 1.50322 * 109.16871 * 222.97336 * 10 9 7
12 12 C 1.29459 * 123.64914 * 349.01979 * 11 10 9
13 13 C 1.50701 * 117.68972 * 180.86083 * 12 11 10
14 14 C 1.52999 * 109.47066 * 95.00477 * 13 12 11
15 15 N 1.46497 * 109.47048 * 179.97438 * 14 13 12
16 16 C 1.34776 * 120.00280 * 179.97438 * 15 14 13
17 17 O 1.21277 * 119.99856 * 0.02562 * 16 15 14
18 18 C 1.50700 * 120.00389 * 179.97438 * 16 15 14
19 19 C 1.50287 * 109.46919 * 300.01779 * 18 16 15
20 20 C 1.32263 * 121.59096 * 303.36555 * 19 18 16
21 21 C 1.45209 * 123.04101 * 0.93918 * 20 19 18
22 22 C 1.32942 * 125.19582 * 319.61307 * 21 20 19
23 23 C 1.45196 * 125.19796 * 359.96920 * 22 21 20
24 24 C 1.32298 * 123.02457 * 40.43896 * 23 22 21
25 25 C 1.49968 * 124.61113 * 1.13942 * 12 11 10
26 26 C 1.47342 * 121.37322 * 155.99115 * 9 7 2
27 27 H 0.96998 * 120.00224 * 359.97438 * 1 2 3
28 28 H 1.08994 * 109.52193 * 103.06141 * 10 9 7
29 29 H 1.09002 * 109.52385 * 342.87737 * 10 9 7
30 30 H 1.08002 * 118.17659 * 169.00334 * 11 10 9
31 31 H 1.09004 * 109.46451 * 214.99891 * 13 12 11
32 32 H 1.08994 * 109.47303 * 334.99900 * 13 12 11
33 33 H 1.09004 * 109.47006 * 299.99073 * 14 13 12
34 34 H 1.08994 * 109.47531 * 59.99562 * 14 13 12
35 35 H 0.97005 * 120.00136 * 0.02562 * 15 14 13
36 36 H 1.09005 * 109.46145 * 60.00396 * 18 16 15
37 37 H 1.07990 * 119.20713 * 123.31532 * 19 18 16
38 38 H 1.08000 * 118.47562 * 180.93631 * 20 19 18
39 39 H 1.07995 * 117.40012 * 139.58546 * 21 20 19
40 40 H 1.08004 * 117.39927 * 179.97438 * 22 21 20
41 41 H 1.08004 * 118.48658 * 220.41271 * 23 22 21
42 42 H 1.08002 * 119.20098 * 178.99568 * 24 23 22
43 43 H 1.09001 * 109.31247 * 101.00873 * 25 12 11
44 44 H 1.08998 * 109.31177 * 220.43698 * 25 12 11
45 45 H 1.09004 * 109.78023 * 237.78645 * 26 9 7
46 46 H 1.09001 * 109.77812 * 358.59220 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2852 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0104 -1.2021 -0.0005
8 1 3.0610 -1.2189 -0.2502
9 7 1.3629 -2.3666 0.3154
10 6 0.1444 -2.3661 1.1378
11 6 0.2246 -3.4841 2.1395
12 6 1.1204 -4.4180 2.1019
13 6 1.0638 -5.4857 3.1640
14 6 0.2871 -6.6923 2.6332
15 7 0.2326 -7.7305 3.6653
16 6 -0.4060 -8.8918 3.4202
17 8 -0.9351 -9.0775 2.3448
18 6 -0.4616 -9.9599 4.4817
19 6 0.9353 -10.3822 4.8410
20 6 1.7787 -10.8348 3.9283
21 6 1.4393 -10.9418 2.5205
22 6 0.2690 -11.3548 2.0436
23 6 -0.8647 -11.7682 2.8510
24 6 -1.2253 -11.1447 3.9607
25 6 2.2139 -4.5089 1.0797
26 6 1.8591 -3.6720 -0.1545
27 1 -0.4850 0.8400 0.0004
28 1 -0.7264 -2.5114 0.4987
29 1 0.0585 -1.4138 1.6611
30 1 -0.5056 -3.5095 2.9348
31 1 2.0767 -5.7920 3.4254
32 1 0.5634 -5.0921 4.0486
33 1 -0.7258 -6.3860 2.3717
34 1 0.7874 -7.0860 1.7485
35 1 0.6555 -7.5818 4.5256
36 1 -0.9612 -9.5665 5.3670
37 1 1.2585 -10.3137 5.8692
38 1 2.7655 -11.1388 4.2447
39 1 2.1977 -10.6634 1.8038
40 1 0.1525 -11.3852 0.9703
41 1 -1.4405 -12.6240 2.5305
42 1 -2.0897 -11.4954 4.5050
43 1 3.1442 -4.1420 1.5133
44 1 2.3438 -5.5495 0.7823
45 1 1.0848 -4.1737 -0.7350
46 1 2.7476 -3.5292 -0.7695
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001160258226.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:16:13
Heat of formation + Delta-G solvation = 32.853980 kcal
Electronic energy + Delta-G solvation = -25533.816584 eV
Core-core repulsion = 22003.351660 eV
Total energy + Delta-G solvation = -3530.464924 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.39589 -39.55796 -38.25976 -36.62410 -35.12926 -33.54786 -33.18410 -32.86589
-31.48730 -30.16567 -27.72082 -26.69647 -24.70065 -24.45776 -23.97821 -22.48970
-22.07862 -19.70923 -19.43527 -18.49783 -18.11733 -17.61431 -17.41066 -17.02905
-16.67441 -16.30257 -15.75343 -15.50086 -15.31302 -15.10885 -15.08666 -14.80334
-14.38286 -14.21493 -13.80910 -13.41439 -13.36887 -13.23648 -13.09688 -12.86564
-12.81628 -12.76550 -12.57754 -12.36162 -12.20764 -11.90252 -11.79241 -11.67858
-11.25533 -11.15427 -10.85551 -10.68273 -10.17444 -10.01707 -9.49248 -9.11989
-8.76192 -7.88525 -5.31121 0.35364 1.10139 1.42979 1.46211 1.49154
1.55924 1.72466 2.26119 2.42917 2.50732 3.27944 3.65534 3.79114
3.89485 3.96517 4.01626 4.10283 4.14297 4.19748 4.23701 4.29416
4.37331 4.54215 4.56600 4.58553 4.69158 4.79842 4.85035 4.90816
4.97946 5.02548 5.06851 5.11098 5.17134 5.22660 5.40570 5.49200
5.51032 5.56265 5.59832 5.68956 5.85330 5.87594 5.88303 5.94098
6.28153 6.32852 6.66079 7.12326 7.37213 7.82266 8.37483 9.19993
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.032838 B = 0.002359 C = 0.002338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 852.474162 B =11866.719702 C =11973.120646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.942 5.942
2 C -0.057 4.057
3 Si 0.973 3.027
4 H -0.275 1.275
5 H -0.294 1.294
6 H -0.277 1.277
7 C -0.260 4.260
8 H 0.071 0.929
9 N -0.615 5.615
10 C 0.207 3.793
11 C -0.175 4.175
12 C -0.120 4.120
13 C -0.077 4.077
14 C 0.137 3.863
15 N -0.715 5.715
16 C 0.515 3.485
17 O -0.573 6.573
18 C -0.050 4.050
19 C -0.136 4.136
20 C -0.121 4.121
21 C -0.155 4.155
22 C -0.093 4.093
23 C -0.123 4.123
24 C -0.132 4.132
25 C -0.086 4.086
26 C 0.136 3.864
27 H 0.250 0.750
28 H 0.001 0.999
29 H 0.055 0.945
30 H 0.113 0.887
31 H 0.091 0.909
32 H 0.084 0.916
33 H 0.045 0.955
34 H 0.051 0.949
35 H 0.415 0.585
36 H 0.138 0.862
37 H 0.158 0.842
38 H 0.138 0.862
39 H 0.106 0.894
40 H 0.098 0.902
41 H 0.127 0.873
42 H 0.142 0.858
43 H 0.069 0.931
44 H 0.083 0.917
45 H 0.016 0.984
46 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.437 -24.214 14.977 28.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.589 5.589
2 C -0.251 4.251
3 Si 0.800 3.200
4 H -0.200 1.200
5 H -0.220 1.220
6 H -0.203 1.203
7 C -0.390 4.390
8 H 0.089 0.911
9 N -0.339 5.339
10 C 0.082 3.918
11 C -0.194 4.194
12 C -0.121 4.121
13 C -0.115 4.115
14 C 0.013 3.987
15 N -0.367 5.367
16 C 0.302 3.698
17 O -0.452 6.452
18 C -0.071 4.071
19 C -0.154 4.154
20 C -0.139 4.139
21 C -0.173 4.173
22 C -0.112 4.112
23 C -0.141 4.141
24 C -0.150 4.150
25 C -0.125 4.125
26 C 0.010 3.990
27 H 0.059 0.941
28 H 0.018 0.982
29 H 0.074 0.926
30 H 0.131 0.869
31 H 0.110 0.890
32 H 0.102 0.898
33 H 0.063 0.937
34 H 0.069 0.931
35 H 0.252 0.748
36 H 0.155 0.845
37 H 0.175 0.825
38 H 0.155 0.845
39 H 0.124 0.876
40 H 0.117 0.883
41 H 0.145 0.855
42 H 0.160 0.840
43 H 0.088 0.912
44 H 0.101 0.899
45 H 0.034 0.966
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 1.981 -24.190 14.178 28.108
hybrid contribution 0.116 1.297 -0.473 1.385
sum 2.097 -22.893 13.705 26.764
Atomic orbital electron populations
1.70198 1.06681 1.25900 1.56094 1.25820 0.96197 1.01571 1.01559
0.85260 0.77441 0.78897 0.78371 1.20043 1.22014 1.20303 1.19516
0.92588 0.85596 1.41273 0.91087 1.44425 1.29457 1.02081 1.57977
1.19339 0.87200 0.95271 0.89952 1.22825 0.99468 0.97193 0.99949
1.20593 0.97100 0.96267 0.98165 1.20790 1.01683 0.92384 0.96594
1.21057 0.99484 0.87248 0.90881 1.45856 1.56639 1.15676 1.18551
1.21046 0.77021 0.82939 0.88790 1.90701 1.47188 1.80017 1.27269
1.19385 0.96750 0.92643 0.98291 1.23156 0.90725 1.00641 1.00906
1.21321 1.00878 0.99778 0.91934 1.21207 0.97578 1.02117 0.96446
1.21137 0.93254 0.97412 0.99354 1.21216 0.97168 1.00320 0.95364
1.23035 0.99002 0.96631 0.96350 1.20736 0.96850 0.99858 0.95041
1.21179 0.96976 0.86091 0.94721 0.94114 0.98162 0.92631 0.86882
0.89033 0.89755 0.93699 0.93060 0.74833 0.84468 0.82498 0.84474
0.87586 0.88349 0.85492 0.84047 0.91215 0.89892 0.96609 0.92266
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.29 11.08 21.65 0.24 -57.05 16
2 C -0.06 -3.26 5.01 84.86 0.43 -2.83 16
3 Si 0.97 45.68 29.58 68.60 2.03 47.71 16
4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
7 C -0.26 -14.72 9.71 84.03 0.82 -13.91 16
8 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16
9 N -0.62 -32.35 3.01 -703.03 -2.11 -34.46 16
10 C 0.21 10.59 5.23 85.42 0.45 11.04 16
11 C -0.18 -6.85 9.47 27.10 0.26 -6.59 16
12 C -0.12 -3.97 5.11 -15.14 -0.08 -4.05 16
13 C -0.08 -1.75 5.32 29.85 0.16 -1.59 16
14 C 0.14 3.35 5.66 86.38 0.49 3.83 16
15 N -0.71 -13.39 5.45 -463.08 -2.53 -15.92 16
16 C 0.51 11.40 5.49 87.66 0.48 11.88 16
17 O -0.57 -18.03 13.67 -3.02 -0.04 -18.07 16
18 C -0.05 -0.71 2.89 -13.29 -0.04 -0.75 16
19 C -0.14 -1.50 8.89 24.50 0.22 -1.28 16
20 C -0.12 -1.73 9.58 23.01 0.22 -1.51 16
21 C -0.16 -3.08 8.53 22.89 0.20 -2.88 16
22 C -0.09 -2.06 7.35 22.89 0.17 -1.89 16
23 C -0.12 -2.36 9.09 22.99 0.21 -2.15 16
24 C -0.13 -2.14 8.78 24.49 0.21 -1.93 16
25 C -0.09 -2.92 5.95 29.72 0.18 -2.74 16
26 C 0.14 5.84 6.59 86.31 0.57 6.41 16
27 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16
28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16
29 H 0.06 3.16 6.41 -2.39 -0.02 3.14 16
30 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16
31 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16
32 H 0.08 1.70 7.78 -2.39 -0.02 1.68 16
33 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16
34 H 0.05 1.42 8.11 -2.39 -0.02 1.40 16
35 H 0.41 4.90 8.36 -92.70 -0.77 4.13 16
36 H 0.14 1.12 8.14 -2.38 -0.02 1.10 16
37 H 0.16 0.68 8.06 -2.92 -0.02 0.65 16
38 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16
39 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16
40 H 0.10 2.30 8.06 -2.91 -0.02 2.28 16
41 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16
42 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16
43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
44 H 0.08 2.35 8.10 -2.39 -0.02 2.33 16
45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
46 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16
Total: -1.00 -74.44 370.54 2.70 -71.74
By element:
Atomic # 1 Polarization: 16.81 SS G_CDS: 0.18 Total: 17.00 kcal
Atomic # 6 Polarization: -15.88 SS G_CDS: 4.93 Total: -10.95 kcal
Atomic # 7 Polarization: -103.03 SS G_CDS: -4.40 Total: -107.43 kcal
Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal
Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal
Total: -74.44 2.70 -71.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160258226.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.598 kcal
(2) G-P(sol) polarization free energy of solvation -74.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.156 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds