Wall clock time and date at job start Tue Mar 31 2020 10:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39720 * 120.19001 * 246.50519 * 3 2 1 5 5 C 1.37816 * 119.89778 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.29817 * 359.97438 * 5 4 3 7 7 C 1.38106 * 120.39445 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.08725 * 0.02562 * 7 6 5 9 9 O 1.35716 * 120.14777 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99837 * 359.95108 * 9 8 7 11 11 C 1.52995 * 109.47138 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.47149 * 64.99771 * 11 10 9 13 13 C 1.46903 * 110.99789 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47222 * 275.00066 * 13 12 11 15 15 C 1.53000 * 109.47415 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.46852 * 59.99987 * 15 14 13 17 17 C 1.50705 * 109.47019 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99886 * 120.00418 * 17 16 15 19 19 C 1.37872 * 119.99961 * 299.99988 * 17 16 15 20 20 N 1.31521 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47163 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47137 * 119.99909 * 21 19 17 24 24 H 1.48502 * 109.47261 * 240.00000 * 21 19 17 25 25 C 1.53005 * 109.47429 * 299.99962 * 16 15 14 26 26 C 1.52995 * 109.46854 * 155.00170 * 13 12 11 27 27 H 1.07996 * 120.05118 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.85446 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.80515 * 179.74693 * 6 5 4 30 30 H 1.07996 * 119.95728 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.47109 * 300.00170 * 10 9 8 32 32 H 1.09000 * 109.46972 * 60.00231 * 10 9 8 33 33 H 1.08996 * 109.47205 * 184.99977 * 11 10 9 34 34 H 1.09007 * 109.47103 * 305.00227 * 11 10 9 35 35 H 1.00897 * 110.99699 * 56.04832 * 12 11 10 36 36 H 1.09004 * 109.47087 * 35.00359 * 13 12 11 37 37 H 1.09004 * 109.47329 * 300.00145 * 14 13 12 38 38 H 1.09008 * 109.47316 * 59.99921 * 14 13 12 39 39 H 1.09004 * 109.46896 * 300.00294 * 15 14 13 40 40 H 1.08995 * 109.47231 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.47422 * 59.99988 * 16 15 14 42 42 H 0.96992 * 119.99537 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.46828 * 300.00160 * 25 16 15 44 44 H 1.08997 * 109.47277 * 180.02562 * 25 16 15 45 45 H 1.09005 * 109.47532 * 300.00035 * 26 13 12 46 46 H 1.09004 * 109.47422 * 59.99753 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.4824 1.1076 5 6 4.6486 0.4807 1.1009 6 6 5.3415 0.0028 0.0008 7 6 4.6596 -0.4762 -1.1004 8 6 3.2732 -0.4810 -1.1115 9 8 2.6018 -0.9520 -2.1928 10 6 3.3874 -1.4276 -3.2876 11 6 2.4629 -1.9139 -4.4055 12 7 1.7001 -0.7775 -4.9392 13 6 0.7991 -1.2079 -6.0167 14 6 1.5637 -1.2324 -7.3416 15 6 0.6251 -1.6800 -8.4640 16 6 -0.5466 -0.7019 -8.5694 17 6 -1.4714 -1.1431 -9.6744 18 1 -2.5013 -1.3818 -9.4537 19 6 -1.0027 -1.2420 -10.9673 20 7 0.2513 -0.9508 -11.2363 21 14 -2.1488 -1.7896 -12.3369 22 1 -3.4983 -2.0551 -11.7767 23 1 -2.2410 -0.7197 -13.3627 24 1 -1.6186 -3.0287 -12.9604 25 6 -1.3113 -0.6774 -7.2444 26 6 -0.3730 -0.2302 -6.1223 27 1 2.7342 0.8556 1.9675 28 1 5.1908 0.8529 1.9576 29 1 6.4215 0.0090 0.0025 30 1 5.2069 -0.8468 -1.9545 31 1 4.0157 -0.6194 -3.6621 32 1 4.0170 -2.2516 -2.9521 33 1 3.0590 -2.3578 -5.2027 34 1 1.7739 -2.6596 -4.0086 35 1 2.3171 -0.0441 -5.2546 36 1 0.4208 -2.2063 -5.7969 37 1 1.9420 -0.2340 -7.5614 38 1 2.3988 -1.9289 -7.2664 39 1 0.2465 -2.6783 -8.2444 40 1 1.1700 -1.6979 -9.4078 41 1 -0.1679 0.2964 -8.7888 42 1 0.5808 -1.0200 -12.1459 43 1 -1.6900 -1.6756 -7.0249 44 1 -2.1464 0.0191 -7.3196 45 1 -0.9178 -0.2127 -5.1783 46 1 0.0052 0.7682 -6.3419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328692.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:29 Heat of formation + Delta-G solvation = -20.338597 kcal Electronic energy + Delta-G solvation = -25015.070783 eV Core-core repulsion = 21482.299256 eV Total energy + Delta-G solvation = -3532.771527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24792 -39.82799 -38.62438 -37.35467 -36.40875 -34.34384 -32.42394 -31.68904 -31.32411 -30.60111 -28.67306 -26.09860 -24.85618 -24.03803 -23.22697 -22.39875 -22.18538 -20.51731 -20.15703 -18.63914 -18.41274 -17.22812 -17.06024 -16.69355 -16.29759 -15.99912 -15.62387 -15.36424 -15.09747 -14.96902 -14.75990 -14.57446 -14.33757 -14.06904 -14.04565 -13.96719 -13.68619 -13.40221 -13.13063 -12.96321 -12.91845 -12.72176 -12.52557 -12.41383 -12.19413 -12.12356 -11.82782 -11.81492 -11.75837 -11.68791 -11.20599 -10.81323 -10.59576 -10.38865 -9.96046 -9.23802 -9.17471 -8.08852 -6.22667 -0.10922 0.48161 1.37387 1.39491 1.50853 1.71760 2.03349 2.17180 2.41977 2.94677 3.00053 3.15030 3.18525 3.82265 3.91055 3.98687 4.09332 4.12765 4.22012 4.29151 4.36831 4.48118 4.49926 4.51625 4.57212 4.62603 4.69975 4.75709 4.80133 4.88033 4.93927 4.97697 5.08622 5.19898 5.27498 5.30707 5.36551 5.39923 5.43957 5.55679 5.59111 5.67321 5.82093 6.02504 6.09844 6.19571 6.36460 6.41338 6.52635 6.59593 6.89463 7.45030 8.94843 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.029741 B = 0.002235 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.246872 B =12526.425276 C =13211.460286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.280 3.720 3 C -0.097 4.097 4 C -0.031 4.031 5 C -0.158 4.158 6 C -0.039 4.039 7 C -0.216 4.216 8 C 0.165 3.835 9 O -0.321 6.321 10 C 0.063 3.937 11 C 0.055 3.945 12 N -0.687 5.687 13 C 0.104 3.896 14 C -0.129 4.129 15 C -0.098 4.098 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 0.951 3.049 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.278 1.278 25 C -0.102 4.102 26 C -0.093 4.093 27 H 0.152 0.848 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.344 0.656 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.058 0.942 41 H -0.008 1.008 42 H 0.260 0.740 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.163 0.379 24.391 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.033 4.033 3 C -0.102 4.102 4 C -0.051 4.051 5 C -0.176 4.176 6 C -0.057 4.057 7 C -0.234 4.234 8 C 0.116 3.884 9 O -0.234 6.234 10 C -0.011 4.011 11 C -0.074 4.074 12 N -0.317 5.317 13 C -0.006 4.006 14 C -0.168 4.168 15 C -0.137 4.137 16 C 0.027 3.973 17 C -0.573 4.573 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.204 1.204 25 C -0.140 4.140 26 C -0.131 4.131 27 H 0.170 0.830 28 H 0.182 0.818 29 H 0.182 0.818 30 H 0.174 0.826 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.010 0.990 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.826 0.320 24.698 29.335 hybrid contribution 0.105 -0.421 -2.156 2.199 sum 15.931 -0.101 22.542 27.603 Atomic orbital electron populations 1.81228 1.13818 1.11231 1.09399 1.25970 0.93076 0.92135 0.92157 1.15653 0.83162 1.13838 0.97541 1.21299 0.95236 0.93644 0.94956 1.21378 0.92737 1.02797 1.00651 1.21652 1.02025 0.91136 0.90927 1.21508 0.90973 1.08039 1.02917 1.19282 0.91684 0.91605 0.85843 1.86205 1.37143 1.75398 1.24623 1.23122 0.93337 1.00170 0.84497 1.22104 0.96428 0.93562 0.95337 1.60584 1.23882 1.11366 1.35879 1.21361 0.92919 0.97988 0.88307 1.22134 0.98196 1.00500 0.95961 1.21335 0.97298 0.97329 0.97722 1.18627 0.93186 0.93956 0.91489 1.21661 0.96794 1.45100 0.93771 0.93455 1.25722 0.96532 0.95530 1.00853 1.70016 1.15437 1.49949 1.20119 0.85612 0.79383 0.77969 0.79331 1.19492 1.20605 1.20417 1.21497 0.97637 0.99487 0.95393 1.21364 0.95949 0.98485 0.97291 0.83031 0.81808 0.81784 0.82607 0.89896 0.88397 0.91219 0.91189 0.83783 0.91527 0.93203 0.92089 0.95628 0.92305 0.98964 0.93089 0.93689 0.93964 0.92444 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.68 18.54 19.01 0.35 -15.33 16 2 C 0.28 7.43 14.87 88.33 1.31 8.74 16 3 C -0.10 -1.81 5.75 -21.21 -0.12 -1.93 16 4 C -0.03 -0.34 9.76 22.53 0.22 -0.12 16 5 C -0.16 -0.93 10.02 22.24 0.22 -0.71 16 6 C -0.04 -0.22 10.03 22.30 0.22 0.00 16 7 C -0.22 -2.16 9.03 22.34 0.20 -1.95 16 8 C 0.17 2.89 6.69 22.83 0.15 3.04 16 9 O -0.32 -7.06 9.52 -90.38 -0.86 -7.92 16 10 C 0.06 0.96 5.02 71.98 0.36 1.32 16 11 C 0.05 1.13 5.87 86.30 0.51 1.64 16 12 N -0.69 -18.49 6.20 -491.57 -3.05 -21.54 16 13 C 0.10 3.44 2.47 44.91 0.11 3.55 16 14 C -0.13 -4.67 5.17 30.59 0.16 -4.52 16 15 C -0.10 -4.63 4.98 30.59 0.15 -4.48 16 16 C 0.05 2.36 2.10 -11.54 -0.02 2.33 16 17 C -0.54 -30.48 8.56 25.60 0.22 -30.26 16 18 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 19 C 0.01 0.68 5.30 84.65 0.45 1.13 16 20 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 21 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 C -0.10 -4.47 5.14 30.58 0.16 -4.31 16 26 C -0.09 -3.45 5.53 30.58 0.17 -3.28 16 27 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 28 H 0.16 -0.01 8.06 -2.91 -0.02 -0.04 16 29 H 0.16 -0.11 8.06 -2.91 -0.02 -0.14 16 30 H 0.16 0.89 6.30 -2.91 -0.02 0.88 16 31 H 0.08 0.98 7.66 -2.39 -0.02 0.96 16 32 H 0.10 0.92 7.66 -2.39 -0.02 0.90 16 33 H 0.07 1.26 7.44 -2.39 -0.02 1.24 16 34 H 0.07 1.63 8.05 -2.38 -0.02 1.61 16 35 H 0.34 8.50 8.47 -89.70 -0.76 7.74 16 36 H 0.07 2.28 7.80 -2.38 -0.02 2.26 16 37 H 0.05 1.85 8.13 -2.38 -0.02 1.83 16 38 H 0.06 1.93 7.45 -2.38 -0.02 1.91 16 39 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 41 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 16 42 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -72.32 376.84 3.41 -68.91 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.22 Total: 12.21 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 4.47 Total: -29.81 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -2.45 Total: -89.99 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.86 Total: -7.92 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.32 3.41 -68.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328692.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.575 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds