Wall clock time and date at job start Tue Mar 31 2020 11:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99751 * 2 1 4 4 H 1.48495 * 109.46807 * 239.99475 * 3 2 1 5 5 H 1.48496 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46993 * 119.99636 * 3 2 1 7 7 C 1.38810 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00493 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99667 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99736 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46736 * 179.97438 * 10 9 7 12 12 C 1.53040 * 109.46561 * 295.06830 * 11 10 9 13 13 C 1.53188 * 109.31746 * 178.61411 * 12 11 10 14 14 N 1.46930 * 108.77082 * 54.63599 * 13 12 11 15 15 C 1.34775 * 120.62627 * 126.41907 * 14 13 12 16 16 O 1.21284 * 120.00166 * 354.92710 * 15 14 13 17 17 C 1.50704 * 120.00020 * 174.94134 * 15 14 13 18 18 F 1.39895 * 109.54390 * 55.57391 * 17 15 14 19 19 C 1.53178 * 109.53613 * 295.31344 * 17 15 14 20 20 C 1.53099 * 109.16040 * 183.15261 * 19 17 15 21 21 O 1.42905 * 109.41540 * 57.61056 * 20 19 17 22 22 C 1.42904 * 114.09568 * 298.84315 * 21 20 19 23 23 C 1.53088 * 109.41825 * 61.15680 * 22 21 20 24 24 C 1.46915 * 118.74023 * 306.38929 * 14 13 12 25 25 C 1.53045 * 109.45688 * 175.00004 * 11 10 9 26 26 H 0.96997 * 120.00199 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00258 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46950 * 60.00082 * 10 9 7 29 29 H 1.08993 * 109.47116 * 300.00097 * 10 9 7 30 30 H 1.09001 * 109.45272 * 55.03885 * 11 10 9 31 31 H 1.09002 * 109.49471 * 298.57121 * 12 11 10 32 32 H 1.09000 * 109.49607 * 58.66370 * 12 11 10 33 33 H 1.08999 * 109.58544 * 294.85100 * 13 12 11 34 34 H 1.08997 * 109.58907 * 174.42061 * 13 12 11 35 35 H 1.09002 * 109.52665 * 303.05321 * 19 17 15 36 36 H 1.09002 * 109.52897 * 63.24765 * 19 17 15 37 37 H 1.08996 * 109.47951 * 297.62574 * 20 19 17 38 38 H 1.09002 * 109.49008 * 177.59572 * 20 19 17 39 39 H 1.09003 * 109.47611 * 301.17676 * 22 21 20 40 40 H 1.09000 * 109.48983 * 181.15156 * 22 21 20 41 41 H 1.08997 * 109.52312 * 182.48876 * 23 22 21 42 42 H 1.08993 * 109.52232 * 62.29533 * 23 22 21 43 43 H 1.08996 * 109.59176 * 293.82462 * 24 14 13 44 44 H 1.09008 * 109.70302 * 173.46793 * 24 14 13 45 45 H 1.08991 * 109.49777 * 301.33619 * 25 11 10 46 46 H 1.08997 * 109.49694 * 61.43722 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 0.2683 -4.8097 1.3085 13 6 -0.7497 -5.9542 1.2909 14 7 -0.0408 -7.2135 1.0255 15 6 -0.1825 -8.2685 1.8521 16 8 -0.8259 -8.1562 2.8740 17 6 0.4589 -9.5878 1.5068 18 9 1.8312 -9.4030 1.3069 19 6 -0.1759 -10.1473 0.2299 20 6 0.4258 -11.5230 -0.0692 21 8 0.2114 -12.3883 1.0477 22 6 0.8226 -11.9397 2.2590 23 6 0.2369 -10.5809 2.6517 24 6 0.8247 -7.3010 -0.1584 25 6 1.8252 -6.1413 -0.1246 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6848 -3.7144 0.8905 29 1 2.6848 -3.7144 -0.8894 30 1 0.3801 -4.7130 -0.8409 31 1 0.9491 -4.9411 2.1496 32 1 -0.2550 -3.8588 1.4086 33 1 -1.4855 -5.7767 0.5065 34 1 -1.2500 -6.0132 2.2575 35 1 -1.2525 -10.2435 0.3703 36 1 0.0251 -9.4731 -0.6026 37 1 1.4959 -11.4203 -0.2494 38 1 -0.0528 -11.9449 -0.9530 39 1 1.8979 -11.8425 2.1093 40 1 0.6299 -12.6617 3.0526 41 1 0.7332 -10.2166 3.5512 42 1 -0.8313 -10.6857 2.8409 43 1 0.2174 -7.2334 -1.0610 44 1 1.3634 -8.2487 -0.1506 45 1 2.4099 -6.1383 -1.0444 46 1 2.4912 -6.2603 0.7300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205432789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:18 Heat of formation + Delta-G solvation = -120.984690 kcal Electronic energy + Delta-G solvation = -27618.582961 eV Core-core repulsion = 23650.677867 eV Total energy + Delta-G solvation = -3967.905094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.50667 -40.41841 -39.12684 -37.81826 -35.06681 -33.66349 -32.82949 -31.73214 -31.03397 -30.40450 -27.26403 -25.90709 -24.35791 -23.81310 -23.14889 -22.04078 -20.98148 -20.23894 -19.34989 -17.79616 -17.17249 -16.98630 -16.60365 -16.41034 -15.78135 -15.62267 -15.26241 -14.84029 -14.60465 -14.53198 -14.23011 -13.82392 -13.72647 -13.25031 -13.15975 -13.09831 -12.93364 -12.87794 -12.59494 -12.42874 -12.16240 -11.90293 -11.77077 -11.24197 -11.12609 -11.06560 -10.94862 -10.82518 -10.47371 -10.39111 -10.26584 -10.22743 -10.00482 -9.75470 -9.59407 -8.87344 -8.75850 -6.92258 -5.77145 -3.05467 2.18563 2.65453 3.39376 3.43755 3.48077 3.49121 3.75356 3.84565 4.00581 4.26326 4.38116 4.57688 4.72518 4.75412 4.84549 4.91386 5.00274 5.04338 5.07315 5.18394 5.20605 5.21174 5.30920 5.39843 5.49055 5.52912 5.56550 5.59141 5.71157 5.74648 5.88819 5.94457 6.06990 6.15234 6.26194 6.31113 6.46977 6.64438 6.69241 6.77917 6.90036 7.15978 7.69166 7.80650 8.42167 9.53170 10.11170 10.45832 11.45802 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.036791 B = 0.002626 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.877412 B =10661.019378 C =10910.864441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.095 4.095 12 C -0.124 4.124 13 C 0.108 3.892 14 N -0.594 5.594 15 C 0.502 3.498 16 O -0.527 6.527 17 C 0.108 3.892 18 F -0.187 7.187 19 C -0.180 4.180 20 C 0.062 3.938 21 O -0.379 6.379 22 C 0.060 3.940 23 C -0.159 4.159 24 C 0.089 3.911 25 C -0.124 4.124 26 H 0.256 0.744 27 H 0.383 0.617 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -25.843 -0.039 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.162 4.162 13 C -0.013 4.013 14 N -0.327 5.327 15 C 0.287 3.713 16 O -0.403 6.403 17 C 0.086 3.914 18 F -0.167 7.167 19 C -0.218 4.218 20 C -0.015 4.015 21 O -0.298 6.298 22 C -0.017 4.017 23 C -0.198 4.198 24 C -0.033 4.033 25 C -0.163 4.163 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.079 -25.795 0.487 25.799 hybrid contribution 0.481 1.493 -0.071 1.570 sum 0.402 -24.301 0.415 24.308 Atomic orbital electron populations 1.69637 1.05097 1.25773 1.57823 1.24729 0.95528 0.97671 1.03063 0.86264 0.78522 0.83550 0.77838 1.21296 1.21683 1.21290 1.19186 0.91000 0.84233 1.42658 0.91315 1.42367 1.05815 0.99966 1.89483 1.20658 0.93128 0.85378 0.97734 1.21323 0.97877 0.94369 0.97777 1.21916 0.97998 0.98212 0.98046 1.21818 0.94725 0.82035 1.02742 1.48153 1.45925 1.12730 1.25850 1.20620 0.81773 0.85272 0.83658 1.90721 1.41758 1.83412 1.24412 1.21178 0.77077 0.94497 0.98605 1.92841 1.31885 1.96135 1.95871 1.22964 1.02867 0.99373 0.96630 1.22579 1.00471 0.88655 0.89756 1.87962 1.75997 1.47716 1.18100 1.22645 0.96863 0.94852 0.87344 1.22582 1.05148 0.94622 0.97404 1.22221 0.92718 1.01142 0.87207 1.21882 0.97585 0.93915 1.02926 0.93466 0.78264 0.96447 0.96359 0.90948 0.91805 0.89236 0.91049 0.89080 0.88481 0.88466 0.92115 0.87735 0.92279 0.87762 0.88847 0.88201 0.91108 0.88549 0.90421 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.33 5.32 -59.91 -0.32 -18.65 16 10 C 0.16 3.14 5.65 -4.04 -0.02 3.11 16 11 C -0.09 -1.45 2.19 -90.58 -0.20 -1.65 16 12 C -0.12 -1.93 5.25 -26.61 -0.14 -2.06 16 13 C 0.11 1.47 6.44 -3.71 -0.02 1.44 16 14 N -0.59 -7.37 2.97 -172.77 -0.51 -7.88 16 15 C 0.50 6.52 6.79 -10.98 -0.07 6.44 16 16 O -0.53 -8.43 15.36 5.55 0.09 -8.34 16 17 C 0.11 1.08 0.73 -91.58 -0.07 1.01 16 18 F -0.19 -1.96 13.78 2.25 0.03 -1.93 16 19 C -0.18 -1.38 4.87 -26.59 -0.13 -1.51 16 20 C 0.06 0.43 6.72 37.21 0.25 0.68 16 21 O -0.38 -3.33 10.77 -35.23 -0.38 -3.70 16 22 C 0.06 0.45 6.72 37.20 0.25 0.70 16 23 C -0.16 -1.46 4.55 -26.59 -0.12 -1.58 16 24 C 0.09 0.92 4.77 -3.71 -0.02 0.91 16 25 C -0.12 -1.51 5.36 -26.61 -0.14 -1.66 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.38 9.98 6.84 -40.82 -0.28 9.70 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.59 7.15 -51.93 -0.37 1.22 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.64 5.78 -51.93 -0.30 0.34 16 37 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.96 7.97 -51.93 -0.41 0.55 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.88 3.95 -51.92 -0.21 0.67 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -32.67 356.04 -8.09 -40.76 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.38 Total: 5.91 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.68 Total: -1.53 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.11 Total: -53.98 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.29 Total: -12.04 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.93 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.67 -8.09 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205432789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.224 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds