Wall clock time and date at job start Tue Mar 31 2020 10:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48499 * 109.46968 * 269.99971 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99869 * 3 2 1 6 6 H 1.48497 * 109.46954 * 149.99975 * 3 2 1 7 7 C 1.39931 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00434 * 162.60732 * 7 2 1 9 9 C 1.41442 * 120.00590 * 342.60637 * 7 2 1 10 10 C 1.40780 * 120.18407 * 154.90845 * 9 7 2 11 11 C 1.37708 * 120.04364 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.40857 * 359.68159 * 11 10 9 13 13 C 1.39874 * 120.36017 * 0.60035 * 12 11 10 14 14 C 1.47880 * 120.02869 * 179.69548 * 13 12 11 15 15 O 1.21547 * 120.00030 * 179.72110 * 14 13 12 16 16 N 1.34781 * 119.99836 * 359.73251 * 14 13 12 17 17 C 1.46500 * 119.99851 * 180.02562 * 16 14 13 18 18 C 1.53859 * 113.67830 * 105.88930 * 17 16 14 19 19 C 1.53336 * 86.95689 * 139.68401 * 18 17 16 20 20 C 1.53349 * 87.52464 * 334.81040 * 19 18 17 21 21 C 1.52803 * 113.60313 * 89.52477 * 19 18 17 22 22 C 1.53206 * 109.00241 * 184.85894 * 21 19 18 23 23 N 1.46835 * 109.44311 * 303.10789 * 22 21 19 24 24 C 1.46826 * 111.44759 * 63.51883 * 23 22 21 25 25 C 1.52785 * 113.61623 * 220.09825 * 19 18 17 26 26 C 1.39035 * 119.94660 * 359.41830 * 13 12 11 27 27 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97443 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.79562 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.81792 * 180.29964 * 12 11 10 31 31 H 0.96998 * 119.99761 * 359.97438 * 16 14 13 32 32 H 1.08993 * 112.83953 * 334.65580 * 17 16 14 33 33 H 1.09000 * 113.63276 * 254.20133 * 18 17 16 34 34 H 1.08997 * 113.63525 * 25.16606 * 18 17 16 35 35 H 1.09000 * 113.63725 * 270.66869 * 20 19 18 36 36 H 1.09005 * 113.71506 * 139.71779 * 20 19 18 37 37 H 1.09004 * 109.54972 * 304.71073 * 21 19 18 38 38 H 1.08998 * 109.55268 * 65.00166 * 21 19 18 39 39 H 1.09001 * 109.47892 * 183.11731 * 22 21 19 40 40 H 1.08998 * 109.48146 * 63.10090 * 22 21 19 41 41 H 1.00899 * 110.99494 * 187.79808 * 23 22 21 42 42 H 1.09002 * 109.47440 * 176.49746 * 24 23 22 43 43 H 1.08999 * 109.48262 * 56.48266 * 24 23 22 44 44 H 1.08997 * 109.54668 * 295.00441 * 25 19 18 45 45 H 1.09001 * 109.55104 * 55.18995 * 25 19 18 46 46 H 1.08005 * 120.20331 * 180.24796 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0509 -1.2334 -0.2790 9 6 1.3493 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1062 11 6 1.1751 -4.8120 0.2522 12 6 0.0692 -4.7731 1.0830 13 6 -0.4153 -3.5502 1.5585 14 6 -1.6017 -3.5167 2.4406 15 8 -2.0192 -2.4541 2.8576 16 7 -2.2199 -4.6646 2.7824 17 6 -3.3956 -4.6314 3.6558 18 6 -4.7206 -4.8923 2.9185 19 6 -5.1351 -5.7342 4.1312 20 6 -3.6423 -5.9512 4.4070 21 6 -5.8472 -4.9312 5.2189 22 6 -6.1036 -5.8417 6.4240 23 7 -6.8821 -7.0109 5.9964 24 6 -6.1357 -7.8299 5.0332 25 6 -5.8808 -7.0153 3.7609 26 6 0.2230 -2.3664 1.2058 27 1 -0.4850 0.8400 -0.0004 28 1 2.6844 -3.6873 -0.7509 29 1 1.5389 -5.7610 -0.1130 30 1 -0.4254 -5.6918 1.3620 31 1 -1.8868 -5.5125 2.4494 32 1 -3.4200 -3.7519 4.2992 33 1 -5.3272 -3.9973 2.7800 34 1 -4.6045 -5.4723 2.0030 35 1 -3.2274 -6.8246 3.9038 36 1 -3.3810 -5.9077 5.4643 37 1 -5.2207 -4.0924 5.5223 38 1 -6.7968 -4.5587 4.8346 39 1 -6.6605 -5.2921 7.1829 40 1 -5.1514 -6.1714 6.8396 41 1 -7.1731 -7.5615 6.7903 42 1 -6.7159 -8.7188 4.7855 43 1 -5.1830 -8.1280 5.4708 44 1 -6.8322 -6.7613 3.2937 45 1 -5.2781 -7.6003 3.0662 46 1 -0.1451 -1.4201 1.5739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219782944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:15 Heat of formation + Delta-G solvation = -9.142435 kcal Electronic energy + Delta-G solvation = -25631.463546 eV Core-core repulsion = 22099.177521 eV Total energy + Delta-G solvation = -3532.286025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73140 -38.87553 -37.07997 -36.27982 -33.79549 -33.05022 -31.17282 -30.30369 -29.44948 -28.95542 -25.93463 -25.33896 -23.85921 -23.34388 -22.12710 -21.01330 -20.44819 -19.61016 -18.26191 -17.63514 -16.78138 -16.23221 -15.89292 -15.15347 -15.07203 -14.86078 -14.61179 -14.46378 -14.09632 -13.86251 -13.43190 -13.19808 -13.14796 -12.73305 -12.57858 -12.48499 -12.27245 -12.22704 -11.72034 -11.55374 -11.38774 -11.36284 -11.14111 -11.05578 -10.75287 -10.52541 -10.49476 -10.30130 -10.05088 -10.01776 -9.68861 -9.21057 -8.97640 -8.71360 -8.57923 -7.62682 -7.51664 -6.79616 -4.41278 2.21349 2.81396 3.07862 3.10707 3.16327 3.73993 3.84942 3.92241 3.93346 4.33608 4.41471 4.53739 4.63052 4.78922 4.94585 4.97474 5.12569 5.25110 5.28766 5.37260 5.41641 5.56985 5.59899 5.61392 5.64679 5.69661 5.82569 5.89051 5.96326 5.98348 6.06758 6.09657 6.24385 6.27895 6.38899 6.72064 6.74530 6.92890 6.99672 7.03582 7.07789 7.21471 7.38303 7.70359 7.76686 7.92833 8.11609 8.20170 8.50835 8.80511 8.83636 8.97864 10.15207 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002682 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.751191 B =10438.529069 C =11244.884094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.564 3.436 15 O -0.547 6.547 16 N -0.726 5.726 17 C 0.129 3.871 18 C -0.143 4.143 19 C -0.077 4.077 20 C -0.139 4.139 21 C -0.095 4.095 22 C 0.059 3.941 23 N -0.692 5.692 24 C 0.059 3.941 25 C -0.098 4.098 26 C -0.092 4.092 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.340 0.660 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.698 -12.549 9.302 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.355 3.645 15 O -0.425 6.425 16 N -0.379 5.379 17 C 0.023 3.977 18 C -0.182 4.182 19 C -0.078 4.078 20 C -0.177 4.177 21 C -0.132 4.132 22 C -0.070 4.070 23 N -0.323 5.323 24 C -0.070 4.070 25 C -0.136 4.136 26 C -0.112 4.112 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.157 0.843 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.532 -11.254 9.107 18.508 hybrid contribution 1.118 -0.193 0.289 1.170 sum -10.414 -11.446 9.395 18.104 Atomic orbital electron populations 1.69789 1.07569 1.29773 1.33641 1.25964 0.94776 1.01543 0.92331 0.86289 0.80613 0.80529 0.79215 1.19439 1.19948 1.18391 1.19573 0.98031 0.91011 1.40289 0.90104 1.17608 0.91214 0.92470 0.89121 1.21098 1.03471 0.92830 1.05740 1.20434 0.96135 0.96720 0.98377 1.20332 1.01460 0.94626 1.07365 1.19493 0.96599 0.95298 1.01776 1.18884 0.83055 0.83001 0.79565 1.90684 1.66555 1.30110 1.55144 1.45940 1.30747 1.09640 1.51529 1.22356 0.84564 0.98382 0.92373 1.23495 0.97393 1.00046 0.97260 1.21367 0.94013 0.95989 0.96404 1.23411 0.95578 0.97933 1.00751 1.21395 1.00669 0.97026 0.94147 1.21927 0.95873 0.92204 0.96980 1.60160 1.43107 1.10570 1.18447 1.21917 0.96121 0.95453 0.93494 1.21490 1.00571 0.95024 0.96482 1.21638 0.96431 0.96442 0.96733 0.90441 0.88627 0.88934 0.89305 0.76607 0.87247 0.91012 0.89722 0.89770 0.91233 0.91065 0.90761 0.90854 0.95080 0.84259 0.91067 0.95160 0.91076 0.91447 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.90 10.97 55.55 0.61 -20.29 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 9 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 10 C -0.21 -5.04 9.78 -38.82 -0.38 -5.42 16 11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 12 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 13 C -0.13 -3.05 5.87 -105.04 -0.62 -3.67 16 14 C 0.56 12.42 7.77 -12.31 -0.10 12.32 16 15 O -0.55 -13.81 15.95 5.32 0.08 -13.72 16 16 N -0.73 -12.03 5.31 -53.87 -0.29 -12.32 16 17 C 0.13 1.80 3.87 -67.04 -0.26 1.54 16 18 C -0.14 -1.76 7.03 -26.11 -0.18 -1.95 16 19 C -0.08 -0.77 0.77 -154.37 -0.12 -0.89 16 20 C -0.14 -1.46 6.71 -26.10 -0.18 -1.64 16 21 C -0.09 -0.92 5.19 -26.73 -0.14 -1.05 16 22 C 0.06 0.50 6.48 -3.75 -0.02 0.47 16 23 N -0.69 -5.58 6.80 -113.65 -0.77 -6.36 16 24 C 0.06 0.47 6.49 -3.76 -0.02 0.45 16 25 C -0.10 -0.87 5.28 -26.73 -0.14 -1.01 16 26 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 27 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 28 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.54 6.38 -52.49 -0.33 1.20 16 31 H 0.40 5.73 6.73 -40.82 -0.27 5.46 16 32 H 0.11 1.73 6.99 -51.93 -0.36 1.37 16 33 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 36 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 37 H 0.07 0.72 7.34 -51.93 -0.38 0.33 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.03 0.26 7.59 -51.93 -0.39 -0.13 16 41 H 0.34 2.15 8.90 -39.29 -0.35 1.80 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.03 0.24 8.07 -51.93 -0.42 -0.18 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 46 H 0.13 3.87 5.77 -52.48 -0.30 3.57 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -29.83 365.18 -11.13 -40.96 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.97 Total: 12.19 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -4.27 Total: -19.79 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.45 Total: -38.96 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.83 -11.13 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219782944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.816 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds