Wall clock time and date at job start Tue Mar 31 2020 10:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48499 * 109.46968 * 269.99971 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99869 * 3 2 1 6 6 H 1.48497 * 109.46954 * 149.99975 * 3 2 1 7 7 C 1.39931 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00434 * 162.60732 * 7 2 1 9 9 C 1.41442 * 120.00590 * 342.60637 * 7 2 1 10 10 C 1.40780 * 120.18407 * 154.90845 * 9 7 2 11 11 C 1.37708 * 120.04364 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.40857 * 359.68159 * 11 10 9 13 13 C 1.39874 * 120.36017 * 0.60035 * 12 11 10 14 14 C 1.47880 * 120.02869 * 179.69548 * 13 12 11 15 15 O 1.21547 * 120.00030 * 179.72110 * 14 13 12 16 16 N 1.34781 * 119.99836 * 359.73251 * 14 13 12 17 17 C 1.46500 * 119.99851 * 180.02562 * 16 14 13 18 18 C 1.53859 * 113.67830 * 105.88930 * 17 16 14 19 19 C 1.53336 * 86.95689 * 139.68401 * 18 17 16 20 20 C 1.53349 * 87.52464 * 334.81040 * 19 18 17 21 21 C 1.52803 * 113.60313 * 89.52477 * 19 18 17 22 22 C 1.53206 * 109.00241 * 184.85894 * 21 19 18 23 23 N 1.46835 * 109.44311 * 303.10789 * 22 21 19 24 24 C 1.46826 * 111.44759 * 63.51883 * 23 22 21 25 25 C 1.52785 * 113.61623 * 220.09825 * 19 18 17 26 26 C 1.39035 * 119.94660 * 359.41830 * 13 12 11 27 27 H 0.96999 * 120.00129 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.97443 * 0.02562 * 10 9 7 29 29 H 1.07996 * 119.79562 * 180.02562 * 11 10 9 30 30 H 1.07999 * 119.81792 * 180.29964 * 12 11 10 31 31 H 0.96998 * 119.99761 * 359.97438 * 16 14 13 32 32 H 1.08993 * 112.83953 * 334.65580 * 17 16 14 33 33 H 1.09000 * 113.63276 * 254.20133 * 18 17 16 34 34 H 1.08997 * 113.63525 * 25.16606 * 18 17 16 35 35 H 1.09000 * 113.63725 * 270.66869 * 20 19 18 36 36 H 1.09005 * 113.71506 * 139.71779 * 20 19 18 37 37 H 1.09004 * 109.54972 * 304.71073 * 21 19 18 38 38 H 1.08998 * 109.55268 * 65.00166 * 21 19 18 39 39 H 1.09001 * 109.47892 * 183.11731 * 22 21 19 40 40 H 1.08998 * 109.48146 * 63.10090 * 22 21 19 41 41 H 1.00899 * 110.99494 * 187.79808 * 23 22 21 42 42 H 1.09002 * 109.47440 * 176.49746 * 24 23 22 43 43 H 1.08999 * 109.48262 * 56.48266 * 24 23 22 44 44 H 1.08997 * 109.54668 * 295.00441 * 25 19 18 45 45 H 1.09001 * 109.55104 * 55.18995 * 25 19 18 46 46 H 1.08005 * 120.20331 * 180.24796 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2118 0.0005 8 1 3.0509 -1.2334 -0.2790 9 6 1.3493 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1062 11 6 1.1751 -4.8120 0.2522 12 6 0.0692 -4.7731 1.0830 13 6 -0.4153 -3.5502 1.5585 14 6 -1.6017 -3.5167 2.4406 15 8 -2.0192 -2.4541 2.8576 16 7 -2.2199 -4.6646 2.7824 17 6 -3.3956 -4.6314 3.6558 18 6 -4.7206 -4.8923 2.9185 19 6 -5.1351 -5.7342 4.1312 20 6 -3.6423 -5.9512 4.4070 21 6 -5.8472 -4.9312 5.2189 22 6 -6.1036 -5.8417 6.4240 23 7 -6.8821 -7.0109 5.9964 24 6 -6.1357 -7.8299 5.0332 25 6 -5.8808 -7.0153 3.7609 26 6 0.2230 -2.3664 1.2058 27 1 -0.4850 0.8400 -0.0004 28 1 2.6844 -3.6873 -0.7509 29 1 1.5389 -5.7610 -0.1130 30 1 -0.4254 -5.6918 1.3620 31 1 -1.8868 -5.5125 2.4494 32 1 -3.4200 -3.7519 4.2992 33 1 -5.3272 -3.9973 2.7800 34 1 -4.6045 -5.4723 2.0030 35 1 -3.2274 -6.8246 3.9038 36 1 -3.3810 -5.9077 5.4643 37 1 -5.2207 -4.0924 5.5223 38 1 -6.7968 -4.5587 4.8346 39 1 -6.6605 -5.2921 7.1829 40 1 -5.1514 -6.1714 6.8396 41 1 -7.1731 -7.5615 6.7903 42 1 -6.7159 -8.7188 4.7855 43 1 -5.1830 -8.1280 5.4708 44 1 -6.8322 -6.7613 3.2937 45 1 -5.2781 -7.6003 3.0662 46 1 -0.1451 -1.4201 1.5739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219782944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:14 Heat of formation + Delta-G solvation = -28.120211 kcal Electronic energy + Delta-G solvation = -25632.286484 eV Core-core repulsion = 22099.177521 eV Total energy + Delta-G solvation = -3533.108963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76599 -40.44915 -38.77938 -37.28864 -35.64419 -34.49750 -32.01295 -31.83318 -31.28331 -30.00900 -27.22995 -26.87755 -25.15221 -24.17315 -23.32013 -22.78686 -21.53695 -21.27450 -19.60753 -18.93091 -17.91308 -17.59007 -17.22013 -16.80144 -16.43631 -16.09857 -15.78581 -15.62971 -15.45780 -15.06782 -14.96605 -14.54300 -14.28384 -14.25557 -13.97494 -13.54409 -13.44366 -13.25815 -13.00004 -12.93925 -12.78943 -12.61907 -12.47663 -12.32534 -12.18964 -12.08675 -11.90700 -11.51965 -11.32509 -11.18271 -11.07442 -10.97022 -10.66706 -10.03202 -9.46722 -9.38846 -9.31973 -8.67220 -6.39087 0.37414 1.00163 1.35210 1.45434 1.51621 2.08746 2.18569 2.29654 2.78030 3.31340 3.45462 3.53272 3.68286 3.70013 3.85263 4.02635 4.08643 4.28175 4.36158 4.41867 4.50898 4.53642 4.58573 4.63217 4.68846 4.74183 4.80827 4.85910 4.94299 4.96318 4.98452 5.08041 5.12441 5.17725 5.19286 5.23640 5.30621 5.40586 5.44802 5.50876 5.63022 5.86391 5.92124 6.04610 6.12899 6.28165 6.51884 6.56522 6.70381 6.87132 6.94056 7.33112 8.29654 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002682 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.751191 B =10438.529069 C =11244.884094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.066 3.934 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.196 4.196 13 C -0.140 4.140 14 C 0.559 3.441 15 O -0.592 6.592 16 N -0.701 5.701 17 C 0.112 3.888 18 C -0.143 4.143 19 C -0.065 4.065 20 C -0.120 4.120 21 C -0.098 4.098 22 C 0.063 3.937 23 N -0.699 5.699 24 C 0.060 3.940 25 C -0.096 4.096 26 C -0.132 4.132 27 H 0.286 0.714 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.413 0.587 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.352 0.648 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.775 -15.953 9.673 21.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.215 4.215 13 C -0.143 4.143 14 C 0.349 3.651 15 O -0.474 6.474 16 N -0.353 5.353 17 C 0.007 3.993 18 C -0.182 4.182 19 C -0.065 4.065 20 C -0.158 4.158 21 C -0.136 4.136 22 C -0.066 4.066 23 N -0.332 5.332 24 C -0.069 4.069 25 C -0.134 4.134 26 C -0.153 4.153 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.251 0.749 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.622 -14.736 9.485 21.028 hybrid contribution 1.060 0.657 0.198 1.263 sum -10.562 -14.078 9.683 20.088 Atomic orbital electron populations 1.69896 1.09271 1.30567 1.35486 1.26870 0.95416 1.05017 0.91354 0.85200 0.79074 0.75736 0.79724 1.18081 1.19795 1.17802 1.19855 0.98420 0.92164 1.42270 0.89757 1.17963 0.91815 0.94002 0.89858 1.21418 1.03888 0.92836 1.05466 1.20938 0.95405 0.97716 0.97337 1.20856 1.00599 0.95105 1.04988 1.19812 0.97018 0.95562 1.01909 1.18805 0.83007 0.83817 0.79434 1.90660 1.67722 1.32117 1.56877 1.45755 1.30522 1.08455 1.50555 1.22622 0.84153 0.99787 0.92740 1.23506 0.96046 1.00092 0.98540 1.21279 0.94094 0.96194 0.94967 1.23361 0.95500 0.96074 1.00819 1.21405 1.00076 0.97192 0.94905 1.21866 0.96262 0.92225 0.96246 1.60134 1.43109 1.10771 1.19173 1.21934 0.96609 0.95553 0.92795 1.21491 1.00168 0.94350 0.97364 1.21442 0.98338 0.96417 0.99087 0.90366 0.87306 0.84235 0.84474 0.74892 0.89741 0.92653 0.88993 0.87722 0.90495 0.92108 0.91510 0.90094 0.94827 0.82946 0.89718 0.94721 0.91764 0.90259 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.97 10.97 21.82 0.24 -46.73 16 2 C 0.03 1.49 5.14 85.25 0.44 1.93 16 3 Si 0.98 40.20 29.59 68.60 2.03 42.23 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.45 9.05 23.47 0.21 -27.24 16 8 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 9 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 10 C -0.22 -10.16 9.78 22.77 0.22 -9.93 16 11 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.20 -7.66 9.55 22.70 0.22 -7.44 16 13 C -0.14 -6.69 5.87 -20.14 -0.12 -6.81 16 14 C 0.56 25.03 7.77 86.80 0.67 25.71 16 15 O -0.59 -31.60 15.95 -3.86 -0.06 -31.66 16 16 N -0.70 -22.28 5.31 -442.63 -2.35 -24.63 16 17 C 0.11 3.04 3.87 45.57 0.18 3.22 16 18 C -0.14 -3.40 7.03 31.00 0.22 -3.19 16 19 C -0.06 -1.17 0.77 -52.09 -0.04 -1.21 16 20 C -0.12 -2.20 6.71 31.00 0.21 -1.99 16 21 C -0.10 -1.81 5.19 30.60 0.16 -1.65 16 22 C 0.06 0.93 6.48 86.38 0.56 1.49 16 23 N -0.70 -9.47 6.80 -513.47 -3.49 -12.96 16 24 C 0.06 0.75 6.49 86.39 0.56 1.31 16 25 C -0.10 -1.42 5.28 30.59 0.16 -1.26 16 26 C -0.13 -7.47 8.23 23.01 0.19 -7.28 16 27 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 28 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 31 H 0.41 10.42 6.73 -92.71 -0.62 9.80 16 32 H 0.08 2.77 6.99 -2.39 -0.02 2.76 16 33 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 34 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.10 1.56 8.00 -2.39 -0.02 1.54 16 36 H 0.08 1.36 7.56 -2.38 -0.02 1.34 16 37 H 0.06 1.24 7.34 -2.39 -0.02 1.22 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.03 0.49 7.59 -2.39 -0.02 0.47 16 41 H 0.35 3.47 8.90 -89.69 -0.80 2.67 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.03 0.42 8.07 -2.39 -0.02 0.40 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.01 8.05 -2.39 -0.02 0.99 16 46 H 0.10 6.11 5.77 -2.91 -0.02 6.09 16 Total: -1.00 -70.31 365.18 -0.11 -70.42 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -0.42 Total: 37.73 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.94 Total: -34.40 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -5.60 Total: -84.32 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.06 Total: -31.66 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -70.31 -0.11 -70.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219782944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.303 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds