Wall clock time and date at job start Tue Mar 31 2020 10:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47069 * 270.00189 * 3 2 1 5 5 H 1.48504 * 109.47179 * 30.00538 * 3 2 1 6 6 H 1.48505 * 109.46854 * 150.00284 * 3 2 1 7 7 C 1.39931 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00260 * 162.60183 * 7 2 1 9 9 C 1.41442 * 119.99885 * 342.59970 * 7 2 1 10 10 C 1.40783 * 120.17353 * 154.95537 * 9 7 2 11 11 C 1.37721 * 120.03930 * 179.72497 * 10 9 7 12 12 C 1.38366 * 120.40882 * 0.51498 * 11 10 9 13 13 C 1.39887 * 120.35770 * 359.48353 * 12 11 10 14 14 C 1.47887 * 120.02276 * 180.23582 * 13 12 11 15 15 O 1.21541 * 119.99793 * 180.02562 * 14 13 12 16 16 N 1.34775 * 120.00155 * 0.02562 * 14 13 12 17 17 C 1.46497 * 119.99972 * 180.02562 * 16 14 13 18 18 C 1.54612 * 112.64854 * 61.45247 * 17 16 14 19 19 C 1.53941 * 106.23648 * 147.80637 * 18 17 16 20 20 C 1.54618 * 106.22694 * 0.02562 * 19 18 17 21 21 N 1.46897 * 112.64927 * 212.18489 * 20 19 18 22 22 C 1.55156 * 103.64433 * 334.26925 * 20 19 18 23 23 C 1.53878 * 107.41767 * 86.95679 * 20 19 18 24 24 C 1.52991 * 109.02271 * 314.62393 * 23 20 19 25 25 C 1.53868 * 112.54225 * 299.82262 * 17 16 14 26 26 C 1.39030 * 119.95023 * 0.25443 * 13 12 11 27 27 H 0.97003 * 119.99562 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98100 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.79572 * 180.27542 * 11 10 9 30 30 H 1.08000 * 119.81924 * 179.76480 * 12 11 10 31 31 H 0.97004 * 120.00094 * 359.97438 * 16 14 13 32 32 H 1.08998 * 110.10231 * 267.00020 * 18 17 16 33 33 H 1.08998 * 110.10266 * 28.61433 * 18 17 16 34 34 H 1.08996 * 110.10321 * 119.19491 * 19 18 17 35 35 H 1.08996 * 110.09964 * 240.75233 * 19 18 17 36 36 H 1.00900 * 110.99668 * 298.54963 * 21 20 19 37 37 H 1.00898 * 110.99741 * 62.49516 * 21 20 19 38 38 H 1.09003 * 111.01109 * 283.16767 * 22 20 19 39 39 H 1.09005 * 111.01593 * 159.29728 * 22 20 19 40 40 H 1.09000 * 109.54629 * 74.49194 * 23 20 19 41 41 H 1.09002 * 109.54517 * 194.76144 * 23 20 19 42 42 H 1.09002 * 109.31884 * 64.36715 * 24 23 20 43 43 H 1.09000 * 109.32311 * 183.82178 * 24 23 20 44 44 H 1.09003 * 109.54681 * 290.55282 * 25 17 16 45 45 H 1.09002 * 109.54985 * 50.82906 * 25 17 16 46 46 H 1.07998 * 120.19930 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6527 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2802 9 6 1.3492 -2.4089 0.3652 10 6 1.8193 -3.6485 -0.1086 11 6 1.1792 -4.8128 0.2539 12 6 0.0663 -4.7737 1.0752 13 6 -0.4151 -3.5513 1.5557 14 6 -1.6021 -3.5186 2.4373 15 8 -2.0203 -2.4563 2.8541 16 7 -2.2200 -4.6667 2.7784 17 6 -3.3961 -4.6342 3.6512 18 6 -4.5719 -3.8403 3.0366 19 6 -5.8590 -4.5161 3.5431 20 6 -5.4058 -5.6892 4.4427 21 7 -6.3326 -6.8279 4.3969 22 6 -3.9960 -6.0431 3.9000 23 6 -5.2052 -5.1302 5.8622 24 6 -4.4275 -3.8155 5.7752 25 6 -3.0925 -4.0164 5.0274 26 6 0.2228 -2.3673 1.2035 27 1 -0.4850 0.8401 0.0004 28 1 2.6848 -3.6867 -0.7534 29 1 1.5459 -5.7619 -0.1083 30 1 -0.4305 -5.6922 1.3504 31 1 -1.8864 -5.5146 2.4454 32 1 -4.5378 -2.8028 3.3691 33 1 -4.5274 -3.8872 1.9486 34 1 -6.4513 -3.8076 4.1221 35 1 -6.4413 -4.8910 2.7015 36 1 -7.2478 -6.5628 4.7288 37 1 -6.3837 -7.2153 3.4666 38 1 -4.0655 -6.6076 2.9702 39 1 -3.4163 -6.5891 4.6444 40 1 -6.1760 -4.9498 6.3238 41 1 -4.6432 -5.8474 6.4605 42 1 -5.0255 -3.0775 5.2405 43 1 -4.2235 -3.4498 6.7815 44 1 -2.4491 -4.6887 5.5950 45 1 -2.5926 -3.0570 4.8942 46 1 -0.1453 -1.4214 1.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220783994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:24 Heat of formation + Delta-G solvation = -31.904319 kcal Electronic energy + Delta-G solvation = -26589.017211 eV Core-core repulsion = 23055.744157 eV Total energy + Delta-G solvation = -3533.273055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98760 -38.74439 -36.94309 -34.41955 -33.75583 -32.93778 -31.38166 -30.14409 -29.44170 -28.62861 -28.11844 -25.31661 -23.85885 -22.71925 -22.17475 -20.96431 -20.06376 -18.84191 -18.75933 -17.69223 -16.75694 -16.13110 -15.84949 -15.25812 -15.09299 -14.72373 -14.50724 -14.16625 -13.95177 -13.54247 -13.26187 -13.05952 -12.73438 -12.66007 -12.52092 -12.46809 -12.20801 -11.98063 -11.66222 -11.34344 -11.20264 -11.14629 -11.06167 -10.80769 -10.70518 -10.55864 -10.47363 -10.39224 -10.30639 -9.97572 -9.69238 -9.21468 -8.94943 -8.83763 -8.57309 -7.62765 -7.51698 -6.80208 -4.41725 2.21750 2.81156 3.07371 3.10155 3.15952 3.58679 3.86417 3.92020 4.10211 4.43209 4.55668 4.65341 4.68743 5.09730 5.11276 5.18960 5.20685 5.26203 5.38665 5.51643 5.57579 5.60994 5.73663 5.77392 5.85802 5.90314 5.98249 6.02221 6.08115 6.12994 6.23487 6.26292 6.29015 6.46744 6.50447 6.71680 6.92292 6.96661 7.00208 7.05583 7.19724 7.21270 7.38212 7.70296 7.77093 7.92632 8.12309 8.20492 8.50635 8.80254 8.83359 8.99494 10.14488 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.003359 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.712203 B = 8334.379611 C = 9128.294765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.567 3.433 15 O -0.540 6.540 16 N -0.723 5.723 17 C 0.175 3.825 18 C -0.120 4.120 19 C -0.150 4.150 20 C 0.115 3.885 21 N -0.830 5.830 22 C -0.110 4.110 23 C -0.101 4.101 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.092 4.092 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.341 0.659 37 H 0.343 0.657 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 -9.192 7.817 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.117 4.117 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.358 3.642 15 O -0.418 6.418 16 N -0.376 5.376 17 C 0.088 3.912 18 C -0.159 4.159 19 C -0.190 4.190 20 C 0.022 3.978 21 N -0.359 5.359 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.156 4.156 25 C -0.165 4.165 26 C -0.112 4.112 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.703 -8.612 8.630 16.224 hybrid contribution -0.090 0.865 -1.058 1.370 sum -10.794 -7.747 7.572 15.293 Atomic orbital electron populations 1.69794 1.07555 1.29712 1.33751 1.25956 0.94770 1.01511 0.92314 0.86297 0.80633 0.80548 0.79207 1.19459 1.19960 1.18385 1.19574 0.98028 0.91007 1.40328 0.90130 1.17601 0.91221 0.92441 0.89128 1.21110 1.03554 0.92816 1.05680 1.20437 0.96052 0.96710 0.98459 1.20351 1.01279 0.94697 1.07470 1.19503 0.96655 0.95280 1.01738 1.18795 0.83050 0.82857 0.79530 1.90658 1.66170 1.30066 1.54879 1.45808 1.30491 1.09780 1.51494 1.21071 0.85414 0.94574 0.90134 1.22475 0.92585 1.00321 1.00493 1.23065 0.98115 0.98671 0.99166 1.21761 0.92215 0.88532 0.95341 1.58640 1.13960 1.32468 1.30787 1.22836 0.95162 0.95610 1.01222 1.21682 1.00108 0.97051 0.95036 1.21808 0.96371 0.97133 1.00302 1.22327 0.97156 1.02829 0.94148 1.21618 0.96431 0.96391 0.96724 0.90491 0.88652 0.88942 0.89279 0.76549 0.90331 0.91830 0.91467 0.92348 0.84608 0.84403 0.91174 0.90391 0.92140 0.91370 0.91269 0.91822 0.92173 0.89472 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.71 10.97 55.55 0.61 -20.10 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.09 9.05 -37.73 -0.34 -12.43 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.60 5.57 -106.87 -0.59 2.01 16 10 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 11 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 12 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.62 16 14 C 0.57 12.10 7.34 -12.31 -0.09 12.01 16 15 O -0.54 -12.91 13.73 5.33 0.07 -12.83 16 16 N -0.72 -11.92 5.25 -46.29 -0.24 -12.16 16 17 C 0.18 2.47 1.05 -129.39 -0.14 2.33 16 18 C -0.12 -1.71 4.57 -25.39 -0.12 -1.83 16 19 C -0.15 -1.62 5.54 -25.39 -0.14 -1.76 16 20 C 0.11 1.14 1.38 -129.15 -0.18 0.96 16 21 N -0.83 -6.90 9.29 2.70 0.03 -6.88 16 22 C -0.11 -1.24 5.39 -24.46 -0.13 -1.37 16 23 C -0.10 -1.00 5.24 -26.28 -0.14 -1.13 16 24 C -0.12 -1.34 5.51 -26.04 -0.14 -1.48 16 25 C -0.13 -1.78 5.03 -25.58 -0.13 -1.91 16 26 C -0.09 -2.43 8.23 -38.44 -0.32 -2.74 16 27 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 31 H 0.40 5.81 6.64 -40.82 -0.27 5.54 16 32 H 0.08 1.27 6.70 -51.93 -0.35 0.92 16 33 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.07 0.69 6.98 -51.93 -0.36 0.32 16 35 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 36 H 0.34 2.35 9.08 -39.29 -0.36 1.99 16 37 H 0.34 2.55 9.05 -39.29 -0.36 2.19 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 42 H 0.07 0.82 5.28 -51.93 -0.27 0.54 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 45 H 0.09 1.52 6.30 -51.93 -0.33 1.19 16 46 H 0.13 3.82 5.77 -52.49 -0.30 3.51 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -28.78 353.50 -10.23 -39.01 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.68 Total: 15.94 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -4.31 Total: -22.03 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.39 Total: -39.14 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.78 -10.23 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220783994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.104 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds