Wall clock time and date at job start Tue Mar 31 2020 10:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48502 * 109.47069 * 270.00189 * 3 2 1 5 5 H 1.48504 * 109.47179 * 30.00538 * 3 2 1 6 6 H 1.48505 * 109.46854 * 150.00284 * 3 2 1 7 7 C 1.39931 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00260 * 162.60183 * 7 2 1 9 9 C 1.41442 * 119.99885 * 342.59970 * 7 2 1 10 10 C 1.40783 * 120.17353 * 154.95537 * 9 7 2 11 11 C 1.37721 * 120.03930 * 179.72497 * 10 9 7 12 12 C 1.38366 * 120.40882 * 0.51498 * 11 10 9 13 13 C 1.39887 * 120.35770 * 359.48353 * 12 11 10 14 14 C 1.47887 * 120.02276 * 180.23582 * 13 12 11 15 15 O 1.21541 * 119.99793 * 180.02562 * 14 13 12 16 16 N 1.34775 * 120.00155 * 0.02562 * 14 13 12 17 17 C 1.46497 * 119.99972 * 180.02562 * 16 14 13 18 18 C 1.54612 * 112.64854 * 61.45247 * 17 16 14 19 19 C 1.53941 * 106.23648 * 147.80637 * 18 17 16 20 20 C 1.54618 * 106.22694 * 0.02562 * 19 18 17 21 21 N 1.46897 * 112.64927 * 212.18489 * 20 19 18 22 22 C 1.55156 * 103.64433 * 334.26925 * 20 19 18 23 23 C 1.53878 * 107.41767 * 86.95679 * 20 19 18 24 24 C 1.52991 * 109.02271 * 314.62393 * 23 20 19 25 25 C 1.53868 * 112.54225 * 299.82262 * 17 16 14 26 26 C 1.39030 * 119.95023 * 0.25443 * 13 12 11 27 27 H 0.97003 * 119.99562 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98100 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.79572 * 180.27542 * 11 10 9 30 30 H 1.08000 * 119.81924 * 179.76480 * 12 11 10 31 31 H 0.97004 * 120.00094 * 359.97438 * 16 14 13 32 32 H 1.08998 * 110.10231 * 267.00020 * 18 17 16 33 33 H 1.08998 * 110.10266 * 28.61433 * 18 17 16 34 34 H 1.08996 * 110.10321 * 119.19491 * 19 18 17 35 35 H 1.08996 * 110.09964 * 240.75233 * 19 18 17 36 36 H 1.00900 * 110.99668 * 298.54963 * 21 20 19 37 37 H 1.00898 * 110.99741 * 62.49516 * 21 20 19 38 38 H 1.09003 * 111.01109 * 283.16767 * 22 20 19 39 39 H 1.09005 * 111.01593 * 159.29728 * 22 20 19 40 40 H 1.09000 * 109.54629 * 74.49194 * 23 20 19 41 41 H 1.09002 * 109.54517 * 194.76144 * 23 20 19 42 42 H 1.09002 * 109.31884 * 64.36715 * 24 23 20 43 43 H 1.09000 * 109.32311 * 183.82178 * 24 23 20 44 44 H 1.09003 * 109.54681 * 290.55282 * 25 17 16 45 45 H 1.09002 * 109.54985 * 50.82906 * 25 17 16 46 46 H 1.07998 * 120.19930 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4398 2.6527 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2332 -0.2802 9 6 1.3492 -2.4089 0.3652 10 6 1.8193 -3.6485 -0.1086 11 6 1.1792 -4.8128 0.2539 12 6 0.0663 -4.7737 1.0752 13 6 -0.4151 -3.5513 1.5557 14 6 -1.6021 -3.5186 2.4373 15 8 -2.0203 -2.4563 2.8541 16 7 -2.2200 -4.6667 2.7784 17 6 -3.3961 -4.6342 3.6512 18 6 -4.5719 -3.8403 3.0366 19 6 -5.8590 -4.5161 3.5431 20 6 -5.4058 -5.6892 4.4427 21 7 -6.3326 -6.8279 4.3969 22 6 -3.9960 -6.0431 3.9000 23 6 -5.2052 -5.1302 5.8622 24 6 -4.4275 -3.8155 5.7752 25 6 -3.0925 -4.0164 5.0274 26 6 0.2228 -2.3673 1.2035 27 1 -0.4850 0.8401 0.0004 28 1 2.6848 -3.6867 -0.7534 29 1 1.5459 -5.7619 -0.1083 30 1 -0.4305 -5.6922 1.3504 31 1 -1.8864 -5.5146 2.4454 32 1 -4.5378 -2.8028 3.3691 33 1 -4.5274 -3.8872 1.9486 34 1 -6.4513 -3.8076 4.1221 35 1 -6.4413 -4.8910 2.7015 36 1 -7.2478 -6.5628 4.7288 37 1 -6.3837 -7.2153 3.4666 38 1 -4.0655 -6.6076 2.9702 39 1 -3.4163 -6.5891 4.6444 40 1 -6.1760 -4.9498 6.3238 41 1 -4.6432 -5.8474 6.4605 42 1 -5.0255 -3.0775 5.2405 43 1 -4.2235 -3.4498 6.7815 44 1 -2.4491 -4.6887 5.5950 45 1 -2.5926 -3.0570 4.8942 46 1 -0.1453 -1.4214 1.5725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220783994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:23 Heat of formation + Delta-G solvation = -50.451181 kcal Electronic energy + Delta-G solvation = -26589.821463 eV Core-core repulsion = 23055.744157 eV Total energy + Delta-G solvation = -3534.077307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10091 -40.33204 -38.70959 -35.77806 -35.50610 -34.01387 -32.58982 -31.71620 -31.26935 -29.77700 -29.02580 -27.20614 -25.06352 -24.17261 -23.21173 -22.78848 -21.56118 -20.16214 -19.82642 -19.36476 -18.16454 -17.41427 -16.95142 -16.92277 -16.46172 -16.09503 -15.85114 -15.52516 -15.38153 -15.08290 -14.77163 -14.35216 -14.25274 -14.06334 -13.70497 -13.56144 -13.43688 -13.19936 -13.05509 -12.88765 -12.78440 -12.56546 -12.29820 -12.24537 -12.16749 -11.92775 -11.67245 -11.59733 -11.52205 -11.44227 -11.22719 -11.07585 -10.54581 -10.04675 -9.58011 -9.47120 -9.38848 -8.67552 -6.39391 0.39031 1.00116 1.34856 1.44998 1.51134 2.11537 2.18368 2.20569 2.78415 3.23817 3.50797 3.63430 3.70263 3.75451 4.03324 4.13844 4.18204 4.21328 4.26082 4.30501 4.38345 4.42649 4.56857 4.60599 4.63312 4.85692 4.89253 4.93933 4.98676 5.01439 5.07585 5.11498 5.14716 5.18548 5.20201 5.26507 5.29626 5.33844 5.48613 5.51143 5.65002 5.86283 5.92480 6.04393 6.27029 6.28498 6.52408 6.64538 6.72587 6.87025 6.93835 7.37469 8.29105 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.003359 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.712203 B = 8334.379611 C = 9128.294765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.498 4.498 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.199 4.199 13 C -0.140 4.140 14 C 0.563 3.437 15 O -0.576 6.576 16 N -0.703 5.703 17 C 0.165 3.835 18 C -0.119 4.119 19 C -0.141 4.141 20 C 0.126 3.874 21 N -0.826 5.826 22 C -0.102 4.102 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.126 4.126 26 C -0.130 4.130 27 H 0.286 0.714 28 H 0.108 0.892 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.411 0.589 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.353 0.647 37 H 0.351 0.649 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.044 0.956 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -12.383 8.487 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.238 4.238 11 C -0.114 4.114 12 C -0.218 4.218 13 C -0.143 4.143 14 C 0.353 3.647 15 O -0.456 6.456 16 N -0.355 5.355 17 C 0.079 3.921 18 C -0.158 4.158 19 C -0.182 4.182 20 C 0.032 3.968 21 N -0.356 5.356 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.150 4.150 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.249 0.751 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.678 -11.870 9.299 19.072 hybrid contribution 0.162 1.673 -1.246 2.092 sum -11.516 -10.197 8.053 17.362 Atomic orbital electron populations 1.69899 1.09231 1.30519 1.35473 1.26850 0.95410 1.04939 0.91328 0.85209 0.79087 0.75782 0.79700 1.18126 1.19754 1.17850 1.19853 0.98400 0.92181 1.42335 0.89844 1.17949 0.91824 0.93910 0.89843 1.21419 1.03994 0.92854 1.05518 1.20924 0.95359 0.97678 0.97423 1.20862 1.00530 0.95203 1.05233 1.19847 0.97145 0.95469 1.01843 1.18653 0.82936 0.83685 0.79426 1.90648 1.67055 1.31784 1.56149 1.45632 1.30462 1.08657 1.50731 1.21355 0.84281 0.97019 0.89438 1.22417 0.95021 0.99293 0.99107 1.23035 0.96183 0.99028 0.99907 1.21617 0.91798 0.88525 0.94884 1.58606 1.14403 1.31143 1.31440 1.22817 0.95769 0.93247 1.02183 1.21648 1.00748 0.95798 0.95198 1.21766 0.94857 0.98299 1.00171 1.22280 0.98665 1.00683 0.94794 1.21413 0.98257 0.96349 0.98992 0.90394 0.87391 0.84382 0.84696 0.75110 0.93327 0.93954 0.90737 0.91115 0.83313 0.83542 0.90045 0.89462 0.90286 0.90800 0.92173 0.90871 0.91391 0.93745 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.65 10.97 21.82 0.24 -46.41 16 2 C 0.03 1.56 5.14 85.25 0.44 2.00 16 3 Si 0.98 40.13 29.59 68.60 2.03 42.16 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.49 9.05 23.47 0.21 -27.28 16 8 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 9 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 10 C -0.22 -10.31 9.78 22.77 0.22 -10.09 16 11 C -0.10 -3.84 10.01 22.18 0.22 -3.61 16 12 C -0.20 -7.88 9.55 22.70 0.22 -7.66 16 13 C -0.14 -6.68 5.87 -20.13 -0.12 -6.80 16 14 C 0.56 24.84 7.34 86.80 0.64 25.48 16 15 O -0.58 -29.54 13.73 -3.84 -0.05 -29.59 16 16 N -0.70 -22.71 5.25 -418.64 -2.20 -24.91 16 17 C 0.17 4.54 1.05 5.18 0.01 4.55 16 18 C -0.12 -3.45 4.57 31.46 0.14 -3.30 16 19 C -0.14 -2.77 5.54 31.46 0.17 -2.60 16 20 C 0.13 2.09 1.38 5.11 0.01 2.09 16 21 N -0.83 -10.31 9.29 -145.37 -1.35 -11.66 16 22 C -0.10 -1.98 5.39 32.07 0.17 -1.81 16 23 C -0.10 -1.60 5.24 30.89 0.16 -1.44 16 24 C -0.11 -2.45 5.51 31.04 0.17 -2.28 16 25 C -0.13 -3.56 5.03 31.34 0.16 -3.41 16 26 C -0.13 -7.28 8.23 23.01 0.19 -7.09 16 27 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 28 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.14 4.06 6.38 -2.91 -0.02 4.04 16 31 H 0.41 10.90 6.64 -92.71 -0.62 10.29 16 32 H 0.05 1.68 6.70 -2.39 -0.02 1.66 16 33 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 34 H 0.07 1.38 6.98 -2.39 -0.02 1.36 16 35 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 36 H 0.35 3.35 9.08 -89.69 -0.81 2.54 16 37 H 0.35 3.74 9.05 -89.70 -0.81 2.93 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.60 7.85 -2.38 -0.02 1.58 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.21 8.02 -2.39 -0.02 1.19 16 42 H 0.06 1.42 5.28 -2.39 -0.01 1.41 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.77 8.06 -2.39 -0.02 1.75 16 45 H 0.04 1.65 6.30 -2.39 -0.02 1.63 16 46 H 0.10 6.12 5.77 -2.91 -0.02 6.10 16 Total: -1.00 -68.84 353.50 0.35 -68.49 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -1.21 Total: 41.61 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 2.90 Total: -39.68 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.31 Total: -82.99 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -68.84 0.35 -68.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220783994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.038 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds