Wall clock time and date at job start Tue Mar 31 2020 11:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.52996 * 113.74430 * 139.93933 * 4 3 2 6 6 N 1.46901 * 109.47058 * 87.40318 * 5 4 3 7 7 C 1.46900 * 110.99899 * 66.04600 * 6 5 4 8 8 C 1.46900 * 111.00070 * 189.99873 * 6 5 4 9 9 C 1.53003 * 109.46650 * 170.00060 * 8 6 5 10 10 C 1.53004 * 109.46694 * 180.02562 * 9 8 6 11 11 N 1.46497 * 109.47132 * 180.02562 * 10 9 8 12 12 C 1.34778 * 120.00398 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99428 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00284 * 180.02562 * 12 11 10 15 15 S 1.81005 * 109.46779 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99652 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00078 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00084 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47030 * 60.00376 * 20 18 16 22 22 H 1.48506 * 109.47342 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47648 * 300.00090 * 20 18 16 24 24 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 25 25 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 26 26 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 27 27 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 28 28 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 29 29 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 30 30 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 31 31 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 32 32 H 1.09001 * 109.47389 * 207.40324 * 5 4 3 33 33 H 1.08999 * 109.47108 * 327.40791 * 5 4 3 34 34 H 1.09003 * 109.46853 * 59.99753 * 7 6 5 35 35 H 1.08996 * 109.47529 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47049 * 300.00125 * 7 6 5 37 37 H 1.08999 * 109.47143 * 290.00103 * 8 6 5 38 38 H 1.08999 * 109.47098 * 50.00680 * 8 6 5 39 39 H 1.08999 * 109.47382 * 299.99896 * 9 8 6 40 40 H 1.08998 * 109.47389 * 60.00485 * 9 8 6 41 41 H 1.09002 * 109.47364 * 300.00338 * 10 9 8 42 42 H 1.08998 * 109.46933 * 60.00050 * 10 9 8 43 43 H 0.97001 * 120.00217 * 0.02562 * 11 10 9 44 44 H 1.08999 * 109.47090 * 299.99975 * 14 12 11 45 45 H 1.08998 * 109.47358 * 60.00365 * 14 12 11 46 46 H 0.96998 * 120.00516 * 180.02562 * 19 18 16 47 47 H 1.09006 * 113.61506 * 254.52982 * 24 2 1 48 48 H 1.08994 * 113.61678 * 25.34974 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5476 1.8422 -2.1109 6 7 4.6341 2.7248 -1.6651 7 6 5.8752 1.9674 -1.4557 8 6 4.8427 3.8247 -2.6163 9 6 5.7978 4.8524 -2.0060 10 6 6.0145 5.9983 -2.9964 11 7 6.9295 6.9821 -2.4123 12 6 7.2685 8.0845 -3.1097 13 8 6.8156 8.2622 -4.2208 14 6 8.2101 9.0962 -2.5091 15 16 8.4664 10.4518 -3.6808 16 6 9.5735 11.4568 -2.7485 17 1 9.8816 11.1477 -1.7606 18 6 10.0496 12.6456 -3.2837 19 7 9.6737 13.0226 -4.4875 20 14 11.2227 13.7113 -2.2950 21 1 12.4528 12.9387 -1.9866 22 1 11.5801 14.9176 -3.0840 23 1 10.5676 14.1252 -1.0283 24 6 2.1460 -0.1865 -1.3966 25 1 -0.3633 -0.9603 -0.3660 26 1 -0.3633 0.7971 -0.6487 27 1 -0.3634 0.1632 1.0147 28 1 1.9533 -0.6616 0.7559 29 1 1.4945 2.1704 -0.4289 30 1 2.5650 1.7024 0.9626 31 1 4.0711 0.4399 -0.5035 32 1 3.8700 1.2849 -2.9904 33 1 2.6723 2.4416 -2.3611 34 1 6.1725 1.4916 -2.3903 35 1 6.6629 2.6447 -1.1258 36 1 5.7110 1.2038 -0.6954 37 1 5.2724 3.4316 -3.5377 38 1 3.8874 4.3017 -2.8354 39 1 5.3681 5.2455 -1.0846 40 1 6.7531 4.3755 -1.7869 41 1 6.4440 5.6056 -3.9181 42 1 5.0591 6.4751 -3.2151 43 1 7.2919 6.8398 -1.5239 44 1 7.7812 9.4893 -1.5873 45 1 9.1653 8.6188 -2.2908 46 1 10.0068 13.8532 -4.8618 47 1 2.5651 -1.1795 -1.5599 48 1 1.4941 0.1364 -2.2081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234154936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:57 Heat of formation + Delta-G solvation = -54.770920 kcal Electronic energy + Delta-G solvation = -22718.612998 eV Core-core repulsion = 19319.792325 eV Total energy + Delta-G solvation = -3398.820673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64576 -40.34776 -38.32810 -36.16047 -34.57859 -33.09246 -31.28604 -30.30775 -28.20590 -27.71176 -26.96413 -26.47389 -24.13814 -22.19746 -21.55483 -21.23638 -20.22990 -19.80207 -17.76735 -17.44143 -17.06253 -16.87231 -16.70573 -16.37461 -16.09069 -15.69186 -15.49386 -15.42548 -14.70082 -14.45579 -14.41693 -14.10120 -13.97667 -13.79872 -13.27553 -13.24072 -13.16481 -13.05016 -12.86015 -12.80117 -12.65466 -12.57933 -12.38822 -12.16498 -11.77292 -11.73102 -11.61408 -11.34448 -11.12240 -11.00675 -10.94281 -10.83759 -10.27727 -10.11670 -9.25573 -8.66569 -8.33807 -6.12386 1.27505 1.44774 1.47544 1.57411 1.61319 2.25647 2.29614 2.93706 3.00245 3.33138 3.70374 3.79018 3.84469 3.93376 3.96476 3.99450 4.13984 4.18699 4.30549 4.36639 4.46616 4.49430 4.51684 4.58358 4.61154 4.65112 4.70052 4.79502 4.81576 4.85171 4.92071 4.95081 5.00264 5.05296 5.11959 5.18136 5.22338 5.24920 5.32740 5.42140 5.45771 5.53722 5.71206 6.11136 6.13982 6.20253 6.51828 7.07233 7.25044 8.75221 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.040176 B = 0.001569 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.772813 B =17842.357525 C =17938.912945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.104 4.104 5 C 0.066 3.934 6 N -0.545 5.545 7 C 0.017 3.983 8 C 0.059 3.941 9 C -0.110 4.110 10 C 0.123 3.877 11 N -0.712 5.712 12 C 0.532 3.468 13 O -0.568 6.568 14 C -0.129 4.129 15 S -0.153 6.153 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.130 4.130 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.417 0.583 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.068 0.932 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -29.493 11.998 34.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.160 4.160 4 C -0.123 4.123 5 C -0.061 4.061 6 N -0.269 5.269 7 C -0.131 4.131 8 C -0.069 4.069 9 C -0.148 4.148 10 C -0.002 4.002 11 N -0.366 5.366 12 C 0.318 3.682 13 O -0.447 6.447 14 C -0.281 4.281 15 S 0.074 5.926 16 C -0.696 4.696 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.168 4.168 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.480 -28.902 10.475 33.981 hybrid contribution 1.514 0.262 0.892 1.777 sum -12.966 -28.640 11.366 33.429 Atomic orbital electron populations 1.21717 0.94649 1.01791 1.01767 1.22479 0.95803 0.97622 0.97644 1.23000 0.97452 0.96252 0.99285 1.22537 0.97332 0.95974 0.96439 1.22145 0.94120 0.93963 0.95908 1.61965 1.06929 1.11385 1.46602 1.22528 0.91687 0.98387 1.00453 1.21965 0.99779 0.92016 0.93172 1.21635 1.00725 0.94028 0.98440 1.21307 0.92917 0.88981 0.96963 1.45739 1.48881 1.21136 1.20873 1.20099 0.80835 0.82266 0.85048 1.90690 1.55432 1.77111 1.21459 1.23375 1.02240 0.98657 1.03788 1.85584 1.61555 1.20296 1.25202 1.23186 1.32159 1.09215 1.05032 0.89844 1.26131 0.98318 0.98314 0.96323 1.70179 1.44114 1.23488 1.17013 0.84997 0.78010 0.76966 0.77976 1.18629 1.20397 1.18656 1.23017 0.97692 0.98851 0.97220 0.92307 0.92802 0.92601 0.89308 0.90547 0.92147 0.89126 0.94978 0.90845 0.95835 0.90711 0.90615 0.94725 0.90466 0.89807 0.90144 0.92680 0.92459 0.74591 0.87132 0.87119 0.91991 0.91307 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.70 71.98 0.70 -0.58 16 2 C -0.12 -1.13 4.35 -10.27 -0.04 -1.18 16 3 C -0.12 -1.40 7.20 31.18 0.22 -1.17 16 4 C -0.10 -1.13 3.70 -10.21 -0.04 -1.17 16 5 C 0.07 0.82 4.80 86.30 0.41 1.24 16 6 N -0.55 -7.47 4.76 -922.46 -4.39 -11.86 16 7 C 0.02 0.21 9.17 127.69 1.17 1.38 16 8 C 0.06 0.86 4.96 86.30 0.43 1.29 16 9 C -0.11 -1.61 5.26 30.60 0.16 -1.45 16 10 C 0.12 2.68 5.67 86.38 0.49 3.17 16 11 N -0.71 -17.88 5.56 -463.05 -2.57 -20.45 16 12 C 0.53 19.82 7.85 87.66 0.69 20.51 16 13 O -0.57 -26.81 15.86 -3.05 -0.05 -26.86 16 14 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 15 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 16 C -0.55 -31.44 9.50 67.95 0.65 -30.80 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.79 5.49 84.86 0.47 1.26 16 19 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 20 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.13 -1.23 7.20 31.12 0.22 -1.00 16 25 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.05 0.50 7.98 -2.39 -0.02 0.48 16 27 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.93 7.75 -2.39 -0.02 0.92 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.00 6.26 -2.39 -0.01 0.98 16 32 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 33 H 0.07 0.94 7.65 -2.39 -0.02 0.92 16 34 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.07 0.83 6.30 -2.39 -0.02 0.82 16 36 H 0.08 0.79 6.29 -2.39 -0.02 0.78 16 37 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 38 H 0.08 1.13 7.93 -2.39 -0.02 1.12 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.04 6.47 -2.39 -0.02 1.03 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.42 7.46 8.47 -92.71 -0.79 6.67 16 44 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 45 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 46 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.08 0.77 8.06 -2.39 -0.02 0.75 16 Total: -1.00 -74.61 396.95 0.24 -74.37 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.13 Total: 18.13 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.97 Total: -13.21 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -6.68 Total: -88.31 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -74.61 0.24 -74.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234154936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.604 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds