Wall clock time and date at job start Tue Mar 31 2020 10:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 120.00109 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99950 * 3 2 1 5 5 H 1.48501 * 109.46836 * 29.99618 * 3 2 1 6 6 H 1.48493 * 109.47010 * 150.00081 * 3 2 1 7 7 C 1.37873 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46967 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47078 * 180.02562 * 10 9 7 12 12 C 1.46880 * 124.37090 * 89.99985 * 11 10 9 13 13 C 1.54705 * 105.51901 * 163.18110 * 12 11 10 14 14 C 1.53620 * 101.50954 * 24.51460 * 13 12 11 15 15 C 1.53255 * 111.05138 * 97.33607 * 14 13 12 16 16 C 1.54653 * 104.77197 * 120.91779 * 15 14 13 17 17 N 1.48842 * 104.54342 * 336.44911 * 16 15 14 18 18 C 1.39672 * 111.01499 * 158.43250 * 17 16 15 19 19 C 1.38906 * 120.07415 * 297.76637 * 18 17 16 20 20 C 1.38108 * 119.92155 * 179.76872 * 19 18 17 21 21 C 1.38290 * 120.07617 * 0.51557 * 20 19 18 22 22 C 1.38283 * 120.14695 * 359.73440 * 21 20 19 23 23 C 1.38106 * 120.07529 * 0.02562 * 22 21 20 24 24 C 1.48797 * 104.45004 * 38.73043 * 17 16 15 25 25 C 1.34763 * 124.37138 * 270.00306 * 11 10 9 26 26 O 1.21279 * 125.13544 * 1.01495 * 25 11 10 27 27 H 0.97002 * 119.99861 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46819 * 60.00164 * 9 7 2 29 29 H 1.09003 * 109.47007 * 300.00090 * 9 7 2 30 30 H 1.09003 * 109.47046 * 60.00512 * 10 9 7 31 31 H 1.09003 * 109.47501 * 299.99996 * 10 9 7 32 32 H 1.08995 * 110.23535 * 44.16597 * 12 11 10 33 33 H 1.09003 * 110.30953 * 282.22759 * 12 11 10 34 34 H 1.09001 * 111.01196 * 266.46073 * 13 12 11 35 35 H 1.08995 * 111.05379 * 142.59103 * 13 12 11 36 36 H 1.08995 * 110.39890 * 239.76933 * 15 14 13 37 37 H 1.08990 * 110.40152 * 2.06350 * 15 14 13 38 38 H 1.09000 * 110.39867 * 95.15748 * 16 15 14 39 39 H 1.09001 * 110.39960 * 217.58099 * 16 15 14 40 40 H 1.08002 * 120.04270 * 0.02562 * 19 18 17 41 41 H 1.08004 * 119.96204 * 180.24997 * 20 19 18 42 42 H 1.07995 * 119.92529 * 179.72701 * 21 20 19 43 43 H 1.08002 * 119.96446 * 180.02562 * 22 21 20 44 44 H 1.08004 * 120.03691 * 179.97438 * 23 22 21 45 45 H 1.09006 * 110.45605 * 202.78426 * 24 17 16 46 46 H 1.09005 * 110.45843 * 80.23163 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 1.0985 -5.6486 -1.2128 13 6 0.7662 -7.0867 -0.7494 14 6 0.4271 -6.8609 0.7318 15 6 -1.0875 -6.7546 0.9397 16 6 -1.4312 -7.8954 1.9256 17 7 -0.3277 -8.8800 1.7573 18 6 -0.2179 -9.7058 2.8784 19 6 0.0901 -9.1595 4.1178 20 6 0.1933 -9.9783 5.2252 21 6 0.0007 -11.3419 5.0991 22 6 -0.3009 -11.8896 3.8657 23 6 -0.4104 -11.0759 2.7552 24 6 0.8923 -8.0450 1.5884 25 6 1.1319 -5.5900 1.1119 26 8 1.3285 -5.2139 2.2480 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8906 31 1 2.8719 -3.6043 -0.8894 32 1 1.9122 -5.6646 -1.9378 33 1 0.2160 -5.1792 -1.6475 34 1 1.6309 -7.7417 -0.8571 35 1 -0.0922 -7.4840 -1.2909 36 1 -1.3446 -5.7880 1.3729 37 1 -1.6117 -6.8981 -0.0050 38 1 -1.4523 -7.5200 2.9487 39 1 -2.3888 -8.3467 1.6656 40 1 0.2447 -8.0951 4.2163 41 1 0.4287 -9.5537 6.1899 42 1 0.0863 -11.9805 5.9658 43 1 -0.4511 -12.9549 3.7707 44 1 -0.6456 -11.5044 1.7921 45 1 1.6700 -8.6071 1.0713 46 1 1.2526 -7.6967 2.5564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274769576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:31 Heat of formation + Delta-G solvation = 2.300711 kcal Electronic energy + Delta-G solvation = -26050.278004 eV Core-core repulsion = 22518.488191 eV Total energy + Delta-G solvation = -3531.789813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17170 -39.61037 -37.42787 -36.00878 -34.08041 -32.71908 -31.14366 -30.97791 -29.19590 -28.65624 -27.83656 -25.13837 -23.89779 -22.88610 -22.51864 -21.81208 -20.92033 -20.19728 -18.66333 -17.55794 -16.64890 -16.24701 -15.79520 -15.63729 -15.31747 -14.96373 -14.67684 -14.50229 -14.34551 -13.94404 -13.71403 -13.49991 -13.30257 -12.90774 -12.68384 -12.57059 -12.40209 -12.28430 -11.95187 -11.78240 -11.61853 -11.40404 -11.33635 -11.29616 -10.96334 -10.94007 -10.70313 -10.64138 -10.00866 -9.86921 -9.38468 -9.13936 -9.11502 -8.87508 -8.72819 -8.38909 -8.03444 -6.03931 -4.07489 1.07799 1.21754 2.94615 3.30103 3.35991 3.39062 3.45342 3.54780 3.78247 4.30846 4.41395 4.44256 4.56984 4.76373 4.78408 4.87779 4.94088 5.04429 5.16626 5.24407 5.30553 5.32294 5.33678 5.43123 5.48131 5.63810 5.64263 5.74065 5.75980 5.84508 5.85918 5.89206 5.96169 6.04952 6.10239 6.19262 6.32650 6.33614 6.44097 6.47993 6.63194 6.78919 6.98767 7.21938 7.48550 7.64688 7.82839 7.95623 8.31762 8.63659 8.99196 9.56681 11.07508 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026057 B = 0.002699 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.314147 B =10370.305158 C =10793.008220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.128 3.872 11 N -0.609 5.609 12 C 0.099 3.901 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.101 4.101 16 C 0.040 3.960 17 N -0.476 5.476 18 C 0.081 3.919 19 C -0.148 4.148 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.095 4.095 24 C 0.058 3.942 25 C 0.525 3.475 26 O -0.530 6.530 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.056 -24.156 2.267 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.026 4.026 10 C 0.008 3.992 11 N -0.342 5.342 12 C -0.024 4.024 13 C -0.152 4.152 14 C -0.104 4.104 15 C -0.139 4.139 16 C -0.086 4.086 17 N -0.197 5.197 18 C -0.014 4.014 19 C -0.168 4.168 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.069 4.069 25 C 0.310 3.690 26 O -0.407 6.407 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.107 0.893 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.135 -24.084 2.381 24.296 hybrid contribution 0.539 1.613 0.636 1.815 sum -1.596 -22.472 3.017 22.729 Atomic orbital electron populations 1.69975 1.06109 1.26710 1.50374 1.25004 0.94861 0.99326 0.95095 0.86548 0.79868 0.83246 0.78083 1.20605 1.21164 1.19785 1.21087 0.93040 0.90693 1.51301 0.92480 1.19405 0.94429 0.91060 0.97698 1.21820 0.95025 0.80996 1.01383 1.48626 1.55898 1.23469 1.06163 1.22130 1.00760 0.91371 0.88167 1.22669 1.02867 0.96297 0.93343 1.21384 0.97167 0.94642 0.97248 1.22182 0.92215 0.99022 1.00489 1.23324 0.94918 0.91465 0.98921 1.63219 1.04199 1.17754 1.34509 1.19071 0.99731 0.93415 0.89153 1.21802 1.00862 1.00677 0.93422 1.21063 0.99701 0.93726 0.98455 1.21175 1.00442 0.95151 0.97647 1.21100 1.00182 0.99717 0.92653 1.20996 0.99566 0.91870 0.98975 1.23079 0.92485 0.91536 0.99804 1.20159 0.78673 0.85234 0.84915 1.90691 1.57223 1.71897 1.20881 0.92922 0.96448 0.96141 0.91189 0.91567 0.90542 0.90996 0.90053 0.88988 0.90226 0.89632 0.92863 0.89455 0.85718 0.86078 0.86166 0.85873 0.85378 0.89330 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 10 C 0.13 2.71 5.88 -4.04 -0.02 2.69 16 11 N -0.61 -11.01 2.95 -172.53 -0.51 -11.52 16 12 C 0.10 1.32 7.37 -2.94 -0.02 1.30 16 13 C -0.11 -1.23 6.24 -25.51 -0.16 -1.39 16 14 C -0.10 -1.35 0.83 -155.25 -0.13 -1.48 16 15 C -0.10 -1.26 6.32 -25.73 -0.16 -1.42 16 16 C 0.04 0.46 6.42 -1.88 -0.01 0.45 16 17 N -0.48 -5.53 5.38 -166.72 -0.90 -6.42 16 18 C 0.08 0.92 4.90 -83.79 -0.41 0.51 16 19 C -0.15 -1.72 8.05 -39.38 -0.32 -2.04 16 20 C -0.11 -1.11 10.04 -39.61 -0.40 -1.50 16 21 C -0.13 -1.10 10.04 -39.55 -0.40 -1.50 16 22 C -0.12 -1.01 10.04 -39.61 -0.40 -1.41 16 23 C -0.10 -0.94 9.97 -39.38 -0.39 -1.33 16 24 C 0.06 0.73 5.49 -2.58 -0.01 0.72 16 25 C 0.52 9.68 6.65 -11.23 -0.07 9.61 16 26 O -0.53 -11.95 17.09 5.56 0.09 -11.85 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.57 7.95 -51.93 -0.41 1.16 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.77 7.51 -51.93 -0.39 0.38 16 35 H 0.09 0.82 7.43 -51.93 -0.39 0.43 16 36 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 37 H 0.09 0.90 7.32 -51.93 -0.38 0.52 16 38 H 0.05 0.66 6.93 -51.93 -0.36 0.30 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.12 1.58 6.77 -52.49 -0.36 1.22 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.09 1.03 7.46 -51.93 -0.39 0.64 16 46 H 0.06 0.95 5.75 -51.93 -0.30 0.65 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -33.40 369.67 -10.63 -44.04 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.14 Total: -0.02 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.47 Total: -10.19 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.67 Total: -44.28 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.40 -10.63 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274769576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.339 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds